YHCQ - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YHCQ - Spore coat protein F-like protein YhcQ

UniProt:	P54601	Sequences: MDQFNQQQQSQMNKGIPGKPHKNHGGHEMFDMHEVLSGTLTVLDQFMMLRQFCKDQELLNILDRQHQFITSQYNITAECFKTGSEPSQKTATYMMKEDNQTVYGMQPSQPKKPVQSMNDIDDSIISRQMLCAIKAQASMLTMASLEMTNPAVRRVLSAQIQEYVEMAFEIFLYQNKHGYYQVPQLDAQDMEQLRNSFAPAQGQMPPTQGGMGQQGLH	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	217 (183)
Sequences:	168 (127)
Seq/√Len:	9.4

BACSU - YHCQ

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
57_E	176_K	5.825	1.00
50_R	63_D	4.074	0.99
61_I	170_I	3.356	0.95
44_D	124_I	3.303	0.95
72_Q	140_L	3.193	0.94
137_A	145_L	3.143	0.93
138_S	142_M	3.051	0.92
114_V	124_I	2.927	0.90
101_T	171_F	2.866	0.89
154_R	165_E	2.476	0.81
137_A	141_T	2.423	0.79
35_V	156_L	2.154	0.70
71_S	88_Q	2.100	0.68
37_S	127_R	2.086	0.68
133_I	170_I	2.013	0.65
69_I	163_Y	1.966	0.63
26_G	30_F	1.961	0.63
26_G	105_M	1.950	0.62
61_I	65_Q	1.928	0.61
157_S	165_E	1.918	0.61
136_Q	163_Y	1.895	0.60
157_S	164_V	1.888	0.60
48_M	120_I	1.886	0.60
69_I	136_Q	1.803	0.56
75_I	88_Q	1.785	0.55
41_T	128_Q	1.775	0.55
85_E	89_K	1.770	0.54
107_P	189_D	1.758	0.54
42_V	69_I	1.731	0.53
39_T	72_Q	1.630	0.48
62_L	130_L	1.626	0.48
124_I	128_Q	1.625	0.48
65_Q	116_S	1.604	0.47
159_Q	200_A	1.580	0.46
60_N	96_K	1.510	0.43
27_H	31_D	1.506	0.43
49_L	128_Q	1.488	0.42
175_N	182_V	1.455	0.41
28_E	178_G	1.442	0.40
26_G	189_D	1.441	0.40
158_A	161_Q	1.437	0.40
32_M	41_T	1.418	0.39
70_T	125_I	1.409	0.39
139_M	200_A	1.389	0.38
54_K	59_L	1.388	0.38
140_L	163_Y	1.371	0.37
163_Y	166_M	1.354	0.36
46_F	129_M	1.343	0.36
104_G	175_N	1.339	0.36
36_L	183_P	1.335	0.36
179_Y	197_F	1.328	0.35
178_G	192_Q	1.301	0.34
46_F	69_I	1.297	0.34
77_A	193_L	1.291	0.34
56_Q	117_M	1.279	0.33
42_V	56_Q	1.262	0.33
125_I	163_Y	1.246	0.32
127_R	131_C	1.245	0.32
49_L	76_T	1.239	0.32
52_F	125_I	1.220	0.31
125_I	170_I	1.202	0.30
54_K	122_D	1.197	0.30
44_D	72_Q	1.172	0.29
132_A	135_A	1.172	0.29
72_Q	163_Y	1.171	0.29
141_T	145_L	1.153	0.29
65_Q	87_S	1.136	0.28
32_M	152_V	1.116	0.27
41_T	170_I	1.112	0.27
178_G	186_D	1.106	0.27
178_G	204_M	1.097	0.27
74_N	200_A	1.096	0.27
71_S	87_S	1.089	0.26
175_N	181_Q	1.075	0.26
131_C	135_A	1.067	0.26
55_D	177_H	1.065	0.26
66_H	127_R	1.063	0.25
95_M	158_A	1.047	0.25
73_Y	113_P	1.043	0.25
44_D	48_M	1.035	0.25
41_T	127_R	1.017	0.24
165_E	169_E	1.012	0.24
53_C	59_L	1.007	0.24
148_T	184_Q	1.007	0.24
71_S	75_I	0.998	0.23
35_V	141_T	0.992	0.23
62_L	119_D	0.990	0.23
124_I	127_R	0.989	0.23
44_D	114_V	0.987	0.23
105_M	192_Q	0.986	0.23
44_D	171_F	0.975	0.23
28_E	73_Y	0.964	0.22
56_Q	60_N	0.962	0.22
146_E	180_Y	0.961	0.22
108_S	178_G	0.951	0.22
59_L	201_Q	0.948	0.22
22_K	125_I	0.934	0.21
104_G	108_S	0.927	0.21
42_V	128_Q	0.922	0.21
90_T	185_L	0.914	0.21
67_Q	160_I	0.911	0.21
118_N	122_D	0.911	0.21
26_G	197_F	0.907	0.21
122_D	125_I	0.906	0.21
43_L	136_Q	0.905	0.20
79_C	189_D	0.903	0.20
172_L	178_G	0.901	0.20
50_R	59_L	0.893	0.20
89_K	159_Q	0.885	0.20
59_L	71_S	0.878	0.20
87_S	203_Q	0.866	0.19
146_E	167_A	0.866	0.19
40_L	129_M	0.860	0.19
71_S	89_K	0.858	0.19
105_M	175_N	0.851	0.19
83_G	95_M	0.849	0.19
105_M	190_M	0.848	0.19
41_T	49_L	0.847	0.19
55_D	58_L	0.846	0.19
80_F	189_D	0.846	0.19
44_D	121_D	0.840	0.19
147_M	156_L	0.838	0.19
59_L	63_D	0.835	0.19
68_F	162_E	0.834	0.19
46_F	197_F	0.833	0.18
137_A	162_E	0.833	0.18
105_M	181_Q	0.826	0.18
125_I	167_A	0.823	0.18
51_Q	77_A	0.818	0.18
59_L	77_A	0.818	0.18
114_V	193_L	0.815	0.18
144_S	159_Q	0.812	0.18
44_D	140_L	0.807	0.18
32_M	36_L	0.803	0.18
31_D	179_Y	0.802	0.18
189_D	192_Q	0.795	0.17
65_Q	163_Y	0.793	0.17
42_V	132_A	0.791	0.17
91_A	201_Q	0.784	0.17
197_F	201_Q	0.783	0.17
60_N	190_M	0.783	0.17
86_P	189_D	0.776	0.17
177_H	198_A	0.775	0.17
73_Y	180_Y	0.772	0.17
184_Q	189_D	0.771	0.17
134_K	153_R	0.769	0.17
118_N	131_C	0.769	0.17
132_A	136_Q	0.762	0.17
25_G	169_E	0.754	0.16
120_I	202_G	0.753	0.16
22_K	47_M	0.748	0.16
173_Y	183_P	0.743	0.16
48_M	125_I	0.740	0.16
43_L	121_D	0.739	0.16
107_P	187_A	0.739	0.16
27_H	198_A	0.736	0.16
162_E	173_Y	0.733	0.16
89_K	92_T	0.725	0.16
38_G	139_M	0.724	0.16
72_Q	133_I	0.724	0.16
54_K	92_T	0.722	0.16
23_N	80_F	0.721	0.16
164_V	168_F	0.721	0.16
100_Q	178_G	0.719	0.16
50_R	116_S	0.716	0.16
23_N	65_Q	0.713	0.15
75_I	204_M	0.711	0.15
141_T	197_F	0.711	0.15
25_G	182_V	0.699	0.15
63_D	116_S	0.697	0.15
152_V	167_A	0.697	0.15
41_T	133_I	0.696	0.15
39_T	67_Q	0.695	0.15
73_Y	167_A	0.691	0.15
58_L	126_S	0.688	0.15
82_T	172_L	0.685	0.15
47_M	114_V	0.684	0.15
23_N	154_R	0.683	0.15
85_E	164_V	0.682	0.15
50_R	131_C	0.681	0.15
35_V	145_L	0.681	0.15
133_I	163_Y	0.676	0.15
163_Y	171_F	0.676	0.15
61_I	96_K	0.675	0.15
47_M	117_M	0.674	0.15
201_Q	204_M	0.672	0.15
37_S	155_V	0.670	0.15
42_V	136_Q	0.670	0.15
149_N	168_F	0.669	0.15
104_G	183_P	0.668	0.14
149_N	175_N	0.666	0.14
53_C	125_I	0.662	0.14
48_M	119_D	0.657	0.14
48_M	99_N	0.652	0.14
92_T	158_A	0.647	0.14
121_D	124_I	0.646	0.14
154_R	157_S	0.638	0.14
85_E	92_T	0.637	0.14
121_D	204_M	0.633	0.14
139_M	142_M	0.633	0.14
27_H	33_H	0.632	0.14
132_A	167_A	0.631	0.14
44_D	128_Q	0.624	0.14
36_L	116_S	0.622	0.13
175_N	183_P	0.622	0.13
55_D	173_Y	0.617	0.13
41_T	132_A	0.616	0.13
29_M	81_K	0.614	0.13
27_H	113_P	0.613	0.13
41_T	124_I	0.613	0.13
187_A	196_S	0.613	0.13
32_M	156_L	0.612	0.13
39_T	69_I	0.612	0.13
161_Q	165_E	0.611	0.13
39_T	140_L	0.610	0.13
75_I	86_P	0.606	0.13
35_V	76_T	0.605	0.13
197_F	204_M	0.601	0.13
50_R	65_Q	0.600	0.13
120_I	128_Q	0.599	0.13
54_K	194_R	0.599	0.13
79_C	155_V	0.597	0.13
53_C	188_Q	0.593	0.13
56_Q	155_V	0.592	0.13
135_A	157_S	0.589	0.13
154_R	169_E	0.588	0.13
73_Y	146_E	0.587	0.13
86_P	152_V	0.584	0.13
49_L	98_D	0.583	0.13
41_T	117_M	0.580	0.13
32_M	143_A	0.577	0.13
25_G	175_N	0.573	0.13
36_L	152_V	0.573	0.13
152_V	169_E	0.573	0.13
38_G	138_S	0.572	0.12
41_T	152_V	0.572	0.12
95_M	109_Q	0.571	0.12
103_Y	175_N	0.569	0.12
100_Q	171_F	0.563	0.12
52_F	127_R	0.562	0.12
72_Q	171_F	0.559	0.12
126_S	174_Q	0.558	0.12
53_C	167_A	0.557	0.12
28_E	113_P	0.554	0.12
93_Y	165_E	0.553	0.12
157_S	161_Q	0.551	0.12
47_M	127_R	0.551	0.12
47_M	186_D	0.549	0.12
101_T	104_G	0.547	0.12
105_M	108_S	0.545	0.12
102_V	116_S	0.543	0.12
101_T	172_L	0.540	0.12
126_S	172_L	0.539	0.12
40_L	53_C	0.539	0.12
39_T	202_G	0.539	0.12
76_T	164_V	0.536	0.12
120_I	160_I	0.533	0.12
49_L	124_I	0.528	0.12
32_M	163_Y	0.527	0.12
36_L	80_F	0.526	0.12
100_Q	201_Q	0.525	0.12
125_I	133_I	0.522	0.12
78_E	87_S	0.521	0.12
59_L	102_V	0.513	0.11
43_L	66_H	0.509	0.11
30_F	136_Q	0.509	0.11
108_S	189_D	0.508	0.11
64_R	97_E	0.508	0.11
108_S	167_A	0.507	0.11
41_T	139_M	0.507	0.11
47_M	131_C	0.503	0.11
38_G	136_Q	0.502	0.11
28_E	180_Y	0.501	0.11
60_N	108_S	0.500	0.11

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2rbdA	4	0.7281	100	0.66	Contact Map
4etrA	1	0.553	94.6	0.929	Contact Map
1vjxA	1	0.6498	72.7	0.949	Contact Map
2oh3A	2	0.6406	63.5	0.953	Contact Map
4am5A	6	0.6774	53.8	0.955	Contact Map
4tofA	6	0.6682	43.9	0.958	Contact Map
1jgcA	6	0.682	38	0.959	Contact Map
2fzfA	2	0.6912	31.4	0.961	Contact Map
1n1qA	6	0.6452	30.3	0.961	Contact Map
3uoiA	7	0.6682	29.9	0.961	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0075 seconds.