YQJZ - BACSU - GREMLIN Contacts

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YQJZ - Uncharacterized protein YqjZ

UniProt:	P54563	Sequences: MMDFLSKTPEPPYYAVIFSSVKSENDTGYGETAERMVSLAADQPGFLGVESVREADGRGITVSYWDSMDAINHWRHHTEHQAAKEKGRSVWYESYAVRVAKVDRQRLFQENTND	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	114 (97)
Sequences:	914 (620)
Seq/√Len:	63.0

BACSU - YQJZ

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
67_S	70_A	3.841	1.00
44_P	66_D	3.812	1.00
32_T	83_A	3.059	1.00
81_Q	84_K	2.737	1.00
53_R	57_G	2.503	1.00
86_K	90_V	2.502	1.00
85_E	89_S	2.494	1.00
50_E	98_R	2.322	1.00
14_Y	71_I	2.318	1.00
35_R	79_E	2.293	1.00
46_F	49_V	2.286	1.00
68_M	99_V	2.264	1.00
40_A	65_W	1.947	1.00
30_G	59_G	1.743	0.99
97_V	106_R	1.733	0.99
96_A	107_L	1.708	0.99
69_D	72_N	1.682	0.99
96_A	105_Q	1.588	0.99
98_R	105_Q	1.510	0.98
14_Y	101_K	1.503	0.98
39_L	42_D	1.490	0.98
35_R	38_S	1.480	0.98
15_A	62_V	1.480	0.98
22_K	26_D	1.477	0.98
27_T	31_E	1.458	0.98
43_Q	65_W	1.430	0.98
36_M	40_A	1.425	0.98
37_V	41_A	1.392	0.97
37_V	46_F	1.310	0.96
20_S	92_Y	1.307	0.96
44_P	73_H	1.291	0.96
19_S	58_R	1.287	0.96
94_S	109_Q	1.232	0.95
22_K	25_N	1.212	0.94
28_G	32_T	1.202	0.94
94_S	108_F	1.193	0.94
86_K	89_S	1.179	0.93
21_V	93_E	1.128	0.92
21_V	94_S	1.126	0.92
51_S	61_T	1.123	0.91
71_I	103_D	1.096	0.90
28_G	91_W	1.082	0.90
32_T	84_K	1.081	0.90
81_Q	88_R	1.029	0.87
17_I	62_V	1.029	0.87
99_V	104_R	1.028	0.87
39_L	77_H	0.998	0.86
52_V	58_R	0.977	0.85
75_R	81_Q	0.956	0.83
28_G	86_K	0.955	0.83
53_R	61_T	0.945	0.83
68_M	100_A	0.943	0.82
39_L	79_E	0.941	0.82
96_A	106_R	0.912	0.80
82_A	108_F	0.905	0.80
16_V	46_F	0.899	0.79
20_S	61_T	0.892	0.79
94_S	97_V	0.889	0.79
19_S	50_E	0.875	0.77
37_V	49_V	0.873	0.77
36_M	39_L	0.855	0.76
13_Y	47_L	0.850	0.75
49_V	65_W	0.843	0.75
38_S	78_T	0.840	0.74
24_E	109_Q	0.837	0.74
66_D	70_A	0.826	0.73
72_N	76_H	0.824	0.73
40_A	63_S	0.813	0.72
14_Y	103_D	0.811	0.72
98_R	102_V	0.811	0.72
68_M	72_N	0.779	0.69
78_T	82_A	0.777	0.69
73_H	78_T	0.774	0.68
41_A	44_P	0.766	0.67
21_V	58_R	0.762	0.67
37_V	95_Y	0.751	0.66
73_H	76_H	0.747	0.66
69_D	73_H	0.736	0.64
84_K	104_R	0.725	0.63
76_H	85_E	0.721	0.63
97_V	107_L	0.721	0.63
84_K	88_R	0.719	0.63
23_S	90_V	0.719	0.63
23_S	27_T	0.717	0.62
45_G	70_A	0.707	0.61
88_R	108_F	0.704	0.61
41_A	88_R	0.696	0.60
34_E	70_A	0.688	0.59
82_A	85_E	0.682	0.58
31_E	38_S	0.669	0.57
75_R	106_R	0.661	0.56
13_Y	102_V	0.659	0.56
52_V	62_V	0.659	0.56
13_Y	19_S	0.645	0.54
47_L	66_D	0.638	0.53
35_R	73_H	0.631	0.53
17_I	63_S	0.628	0.52
36_M	62_V	0.614	0.51
19_S	46_F	0.611	0.50
39_L	59_G	0.610	0.50
76_H	109_Q	0.609	0.50
24_E	91_W	0.609	0.50
51_S	97_V	0.605	0.50
20_S	51_S	0.602	0.49
99_V	103_D	0.602	0.49
84_K	106_R	0.599	0.49
23_S	28_G	0.592	0.48
96_A	99_V	0.591	0.48
34_E	38_S	0.586	0.48
22_K	41_A	0.584	0.47
16_V	71_I	0.584	0.47
40_A	60_I	0.584	0.47
28_G	31_E	0.583	0.47
77_H	81_Q	0.582	0.47
38_S	41_A	0.581	0.47
22_K	53_R	0.577	0.46
32_T	91_W	0.572	0.46
15_A	63_S	0.567	0.45
32_T	79_E	0.564	0.45
38_S	43_Q	0.561	0.45
86_K	101_K	0.559	0.44
73_H	77_H	0.556	0.44
36_M	91_W	0.546	0.43
20_S	53_R	0.546	0.43
81_Q	85_E	0.544	0.43
76_H	99_V	0.541	0.42
50_E	58_R	0.540	0.42
32_T	82_A	0.539	0.42
52_V	60_I	0.537	0.42
54_E	58_R	0.532	0.41
31_E	88_R	0.532	0.41
55_A	60_I	0.529	0.41
50_E	104_R	0.526	0.41
88_R	95_Y	0.522	0.40
43_Q	70_A	0.520	0.40
16_V	33_A	0.520	0.40
15_A	19_S	0.517	0.40
44_P	82_A	0.516	0.40
15_A	64_Y	0.514	0.39
21_V	76_H	0.510	0.39
32_T	35_R	0.508	0.39
70_A	73_H	0.505	0.38
26_D	91_W	0.504	0.38
59_G	71_I	0.503	0.38
85_E	88_R	0.501	0.38
23_S	77_H	0.500	0.38

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2go8A	2	0.7807	100	0.326	Contact Map
3hx9A	2	0.8509	99.4	0.704	Contact Map
4kiaA	1	0.8158	99.1	0.745	Contact Map
1sqeA	2	0.8246	98.7	0.775	Contact Map
1tz0A	3	0.8772	98.7	0.775	Contact Map
3kg0A	2	0.8509	98.6	0.782	Contact Map
3fj2A	1	0.9035	98.6	0.785	Contact Map
4fvcA	1	0.8333	98.5	0.79	Contact Map
2zdoA	2	0.8596	98.5	0.791	Contact Map
4ae5A	1	0.9035	98.2	0.81	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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