COAA - BACSU - GREMLIN Contacts

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COAA - Pantothenate kinase

UniProt:	P54556	Sequences: MKNKELNLHTLYTQHNRESWSGFGGHLSIAVSEEEAKAVEGLNDYLSVEEVETIYIPLVRLLHLHVKSAAERNKHVNVFLKHPHSAKIPFIIGIAGSVAVGKSTTARILQKLLSRLPDRPKVSLITTDGFLFPTAELKKKNMMSRKGFPESYDVKALLEFLNDLKSGKDSVKAPVYSHLTYDREEGVFEVVEQADIVIIEGINVLQSPTLEDDRENPRIFVSDFFDFSIYVDAEESRIFTWYLERFRLLRETAFQNPDSYFHKFKDLSDQEADEMAASIWESVNRPNLYENILPTKFRSDLILRKGDGHKVEEVLVRRV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	319 (303)
Sequences:	911 (515)
Seq/√Len:	29.6

ECOLI - COAA
BACSU - COAA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
136_E	139_K	8.366	1.00
170_S	192_E	5.889	1.00
239_F	281_E	4.532	1.00
163_D	168_K	4.095	1.00
239_F	277_A	3.806	1.00
135_A	182_D	3.746	1.00
278_S	282_S	3.728	1.00
172_K	188_F	3.630	1.00
235_E	289_Y	3.329	1.00
164_L	197_V	3.321	1.00
304_R	312_E	3.156	1.00
16_N	19_S	3.070	1.00
136_E	140_K	2.855	1.00
175_V	186_G	2.678	1.00
306_G	312_E	2.656	1.00
59_V	116_L	2.623	1.00
281_E	285_R	2.612	1.00
247_R	273_D	2.561	0.99
169_D	192_E	2.550	0.99
159_E	163_D	2.483	0.99
100_V	238_I	2.416	0.99
179_L	259_S	2.349	0.99
41_G	44_D	2.338	0.99
134_T	183_R	2.249	0.99
250_R	269_D	2.241	0.99
14_Q	313_E	2.176	0.98
72_R	225_F	2.149	0.98
303_L	314_V	2.143	0.98
70_A	87_K	2.109	0.98
304_R	313_E	2.097	0.98
49_E	52_E	2.036	0.97
239_F	285_R	1.999	0.97
135_A	139_K	1.993	0.97
240_T	244_E	1.984	0.97
46_L	108_I	1.973	0.97
24_G	28_S	1.939	0.96
113_L	196_I	1.933	0.96
24_G	30_A	1.910	0.96
243_L	273_D	1.905	0.96
72_R	76_V	1.889	0.96
175_V	184_E	1.889	0.96
180_T	184_E	1.880	0.96
62_L	301_L	1.860	0.95
170_S	190_V	1.860	0.95
268_S	271_E	1.784	0.94
145_R	150_E	1.771	0.94
235_E	285_R	1.742	0.93
274_E	278_S	1.733	0.93
275_M	279_I	1.717	0.93
237_R	240_T	1.695	0.92
152_Y	259_S	1.680	0.92
15_H	19_S	1.670	0.92
63_H	119_R	1.650	0.91
227_F	301_L	1.640	0.91
234_E	237_R	1.631	0.91
141_N	171_V	1.613	0.90
43_N	47_S	1.605	0.90
199_I	225_F	1.592	0.90
17_R	53_T	1.579	0.89
175_V	183_R	1.548	0.88
24_G	60_R	1.546	0.88
240_T	307_D	1.521	0.87
134_T	143_M	1.514	0.87
14_Q	315_L	1.502	0.87
169_D	193_Q	1.494	0.86
273_D	277_A	1.487	0.86
194_A	197_V	1.485	0.86
204_V	225_F	1.472	0.86
35_E	115_R	1.462	0.85
59_V	62_L	1.461	0.85
172_K	190_V	1.456	0.85
157_L	199_I	1.450	0.85
94_I	106_A	1.443	0.84
286_P	290_E	1.420	0.83
237_R	307_D	1.415	0.83
60_R	116_L	1.414	0.83
67_K	118_D	1.412	0.83
27_L	225_F	1.409	0.83
49_E	53_T	1.382	0.82
106_A	124_L	1.375	0.81
29_I	48_V	1.344	0.80
33_E	37_K	1.341	0.80
117_P	120_P	1.336	0.79
56_I	60_R	1.331	0.79
246_F	272_A	1.322	0.79
269_D	273_D	1.318	0.79
209_T	218_R	1.307	0.78
265_K	268_S	1.299	0.78
52_E	56_I	1.298	0.77
262_H	266_D	1.293	0.77
306_G	311_V	1.292	0.77
14_Q	302_I	1.288	0.77
306_G	310_K	1.280	0.76
47_S	50_E	1.265	0.76
251_E	269_D	1.249	0.75
267_L	279_I	1.243	0.74
94_I	229_I	1.219	0.73
123_S	189_E	1.218	0.73
106_A	153_D	1.210	0.72
180_T	256_N	1.209	0.72
267_L	275_M	1.209	0.72
93_G	225_F	1.197	0.71
208_P	220_F	1.194	0.71
249_L	252_T	1.191	0.71
255_Q	262_H	1.185	0.71
68_S	75_H	1.170	0.70
157_L	221_V	1.168	0.70
196_I	292_I	1.159	0.69
32_S	35_E	1.157	0.69
144_S	282_S	1.152	0.68
66_V	70_A	1.142	0.68
43_N	220_F	1.142	0.68
35_E	41_G	1.139	0.68
12_Y	282_S	1.131	0.67
250_R	306_G	1.128	0.67
43_N	292_I	1.124	0.66
71_E	221_V	1.120	0.66
94_I	306_G	1.087	0.64
54_I	286_P	1.087	0.64
35_E	45_Y	1.065	0.62
132_F	136_E	1.061	0.62
252_T	255_Q	1.056	0.62
109_L	296_K	1.054	0.61
125_I	173_A	1.050	0.61
162_N	224_F	1.046	0.61
206_Q	292_I	1.018	0.59
59_V	120_P	1.016	0.59
76_V	225_F	1.016	0.59
105_T	256_N	1.015	0.58
13_T	219_I	1.015	0.58
34_E	38_A	1.008	0.58
161_L	218_R	1.008	0.58
16_N	313_E	1.006	0.58
119_R	196_I	1.004	0.58
270_Q	274_E	1.003	0.58
254_F	261_F	1.001	0.57
16_N	91_I	1.001	0.57
51_V	108_I	1.000	0.57
17_R	23_F	0.994	0.57
105_T	231_V	0.993	0.57
71_E	74_K	0.992	0.57
129_G	173_A	0.989	0.56
69_A	87_K	0.986	0.56
44_D	50_E	0.986	0.56
63_H	118_D	0.985	0.56
273_D	279_I	0.984	0.56
32_S	307_D	0.957	0.54
138_K	141_N	0.956	0.54
293_L	296_K	0.944	0.53
234_E	304_R	0.943	0.53
261_F	291_N	0.931	0.52
67_K	119_R	0.928	0.52
48_V	68_S	0.909	0.50
133_P	136_E	0.908	0.50
243_L	267_L	0.907	0.50
67_K	74_K	0.895	0.49
40_E	47_S	0.894	0.49
62_L	92_I	0.894	0.49
173_A	189_E	0.893	0.49
289_Y	293_L	0.892	0.49
88_I	218_R	0.892	0.49
175_V	187_V	0.892	0.49
24_G	29_I	0.891	0.49
207_S	220_F	0.891	0.49
66_V	116_L	0.891	0.49
27_L	30_A	0.888	0.49
73_N	76_V	0.884	0.48
202_I	247_R	0.882	0.48
285_R	289_Y	0.878	0.48
91_I	118_D	0.876	0.48
264_F	275_M	0.874	0.47
94_I	197_V	0.869	0.47
116_L	119_R	0.864	0.47
172_K	189_E	0.862	0.46
87_K	121_K	0.859	0.46
43_N	248_L	0.854	0.46
43_N	154_V	0.853	0.46
25_G	28_S	0.847	0.45
158_L	218_R	0.832	0.44
15_H	285_R	0.830	0.44
130_F	160_F	0.829	0.44
61_L	181_Y	0.829	0.44
68_S	316_V	0.828	0.44
238_I	304_R	0.826	0.44
123_S	192_E	0.825	0.44
13_T	26_H	0.825	0.44
191_V	275_M	0.817	0.43
126_T	129_G	0.817	0.43
165_K	318_R	0.817	0.43
199_I	208_P	0.817	0.43
183_R	187_V	0.815	0.43
93_G	199_I	0.810	0.42
11_L	39_V	0.807	0.42
15_H	28_S	0.806	0.42
181_Y	253_A	0.806	0.42
138_K	143_M	0.806	0.42
53_T	108_I	0.797	0.41
37_K	40_E	0.795	0.41
14_Q	219_I	0.795	0.41
28_S	60_R	0.794	0.41
204_V	231_V	0.785	0.41
15_H	54_I	0.785	0.41
234_E	306_G	0.785	0.41
39_V	67_K	0.782	0.40
259_S	291_N	0.780	0.40
36_A	48_V	0.779	0.40
19_S	74_K	0.775	0.40
29_I	116_L	0.775	0.40
198_I	225_F	0.773	0.40
67_K	78_V	0.770	0.39
280_W	284_N	0.770	0.39
12_Y	85_S	0.767	0.39
37_K	54_I	0.766	0.39
125_I	199_I	0.766	0.39
114_S	302_I	0.764	0.39
161_L	231_V	0.764	0.39
33_E	40_E	0.757	0.38
18_E	169_D	0.754	0.38
64_L	78_V	0.749	0.38
62_L	224_F	0.749	0.38
93_G	231_V	0.747	0.38
134_T	138_K	0.746	0.38
24_G	56_I	0.743	0.37
196_I	315_L	0.743	0.37
184_E	187_V	0.742	0.37
154_V	207_S	0.741	0.37
47_S	51_V	0.741	0.37
32_S	53_T	0.739	0.37
234_E	307_D	0.736	0.37
179_L	258_D	0.735	0.37
44_D	207_S	0.735	0.37
105_T	314_V	0.735	0.37
225_F	238_I	0.734	0.37
129_G	222_S	0.733	0.37
296_K	308_G	0.732	0.37
268_S	275_M	0.725	0.36
270_Q	273_D	0.723	0.36
308_G	312_E	0.720	0.36
250_R	291_N	0.718	0.36
247_R	267_L	0.715	0.35
17_R	231_V	0.714	0.35
38_A	190_V	0.714	0.35
36_A	66_V	0.713	0.35
22_G	268_S	0.713	0.35
12_Y	19_S	0.711	0.35
73_N	199_I	0.710	0.35
106_A	286_P	0.710	0.35
278_S	281_E	0.710	0.35
62_L	311_V	0.709	0.35
40_E	46_L	0.708	0.35
125_I	189_E	0.708	0.35
275_M	282_S	0.707	0.35
236_S	308_G	0.705	0.35
12_Y	106_A	0.700	0.34
39_V	49_E	0.699	0.34
197_V	281_E	0.696	0.34
95_A	250_R	0.693	0.34
155_K	161_L	0.692	0.34
123_S	265_K	0.689	0.33
65_H	69_A	0.686	0.33
48_V	190_V	0.686	0.33
57_P	178_H	0.680	0.33
13_T	138_K	0.678	0.33
30_A	35_E	0.676	0.33
25_G	255_Q	0.675	0.32
179_L	239_F	0.675	0.32
134_T	260_Y	0.674	0.32
109_L	197_V	0.674	0.32
105_T	157_L	0.671	0.32
243_L	275_M	0.665	0.32
268_S	273_D	0.665	0.32
32_S	290_E	0.665	0.32
24_G	68_S	0.664	0.32
123_S	169_D	0.664	0.32
227_F	316_V	0.662	0.32
91_I	94_I	0.662	0.32
33_E	52_E	0.662	0.32
66_V	119_R	0.660	0.31
88_I	166_S	0.657	0.31
10_T	50_E	0.654	0.31
121_K	239_F	0.652	0.31
158_L	216_N	0.651	0.31
117_P	162_N	0.649	0.31
29_I	52_E	0.649	0.31
154_V	161_L	0.644	0.30
32_S	315_L	0.643	0.30
25_G	145_R	0.643	0.30
218_R	285_R	0.641	0.30
63_H	67_K	0.639	0.30
297_F	314_V	0.637	0.30
22_G	169_D	0.636	0.30
9_H	16_N	0.636	0.30
190_V	193_Q	0.634	0.30
139_K	191_V	0.631	0.30
32_S	109_L	0.628	0.29
92_I	113_L	0.627	0.29
35_E	316_V	0.626	0.29
12_Y	15_H	0.626	0.29
164_L	187_V	0.625	0.29
91_I	153_D	0.624	0.29
236_S	240_T	0.623	0.29
178_H	181_Y	0.622	0.29
118_D	138_K	0.621	0.29
29_I	180_T	0.620	0.29
73_N	302_I	0.620	0.29
21_S	69_A	0.619	0.29
29_I	111_K	0.618	0.29
250_R	265_K	0.617	0.29
247_R	283_V	0.616	0.29
68_S	119_R	0.615	0.28
271_E	274_E	0.614	0.28
275_M	286_P	0.612	0.28
36_A	50_E	0.612	0.28
90_F	111_K	0.612	0.28
65_H	76_V	0.610	0.28
72_R	122_V	0.610	0.28
181_Y	204_V	0.609	0.28
90_F	225_F	0.608	0.28
87_K	193_Q	0.607	0.28
31_V	56_I	0.606	0.28
24_G	43_N	0.605	0.28
47_S	57_P	0.605	0.28
90_F	277_A	0.603	0.28
229_I	301_L	0.603	0.28
54_I	133_P	0.602	0.28
103_S	195_D	0.602	0.28
47_S	260_Y	0.597	0.27
265_K	269_D	0.595	0.27
256_N	296_K	0.595	0.27
121_K	197_V	0.594	0.27
24_G	111_K	0.594	0.27
260_Y	316_V	0.593	0.27
25_G	29_I	0.592	0.27
54_I	108_I	0.592	0.27
73_N	108_I	0.592	0.27
109_L	113_L	0.591	0.27
32_S	94_I	0.588	0.27
169_D	308_G	0.586	0.27
101_G	201_G	0.586	0.27
102_K	201_G	0.586	0.27
66_V	69_A	0.586	0.27
45_Y	156_A	0.583	0.26
105_T	228_S	0.583	0.26
35_E	51_V	0.582	0.26
37_K	251_E	0.581	0.26
32_S	77_N	0.577	0.26
192_E	197_V	0.576	0.26
22_G	25_G	0.575	0.26
240_T	308_G	0.575	0.26
142_M	307_D	0.574	0.26
27_L	63_H	0.572	0.26
228_S	233_A	0.572	0.26
52_E	60_R	0.572	0.26
45_Y	273_D	0.571	0.26
199_I	249_L	0.571	0.26
27_L	114_S	0.570	0.26
127_T	148_F	0.568	0.26
46_L	313_E	0.568	0.26
9_H	163_D	0.567	0.25
37_K	312_E	0.566	0.25
59_V	117_P	0.566	0.25
34_E	273_D	0.565	0.25
32_S	46_L	0.565	0.25
59_V	301_L	0.563	0.25
87_K	108_I	0.562	0.25
196_I	206_Q	0.561	0.25
92_I	234_E	0.560	0.25
40_E	145_R	0.560	0.25
72_R	93_G	0.559	0.25
24_G	33_E	0.556	0.25
24_G	27_L	0.556	0.25
186_G	191_V	0.556	0.25
30_A	62_L	0.554	0.25
224_F	235_E	0.554	0.25
300_D	315_L	0.553	0.25
121_K	170_S	0.553	0.25
157_L	231_V	0.553	0.25
30_A	53_T	0.552	0.25
164_L	257_P	0.552	0.25
179_L	262_H	0.552	0.25
19_S	111_K	0.548	0.24
63_H	116_L	0.548	0.24
155_K	183_R	0.547	0.24
82_H	168_K	0.547	0.24
199_I	252_T	0.544	0.24
244_E	273_D	0.544	0.24
19_S	26_H	0.544	0.24
36_A	282_S	0.543	0.24
12_Y	75_H	0.542	0.24
116_L	316_V	0.542	0.24
41_G	51_V	0.542	0.24
111_K	115_R	0.541	0.24
21_S	216_N	0.540	0.24
32_S	48_V	0.539	0.24
181_Y	264_F	0.539	0.24
158_L	314_V	0.538	0.24
18_E	22_G	0.537	0.24
80_L	171_V	0.535	0.24
220_F	300_D	0.534	0.24
154_V	217_P	0.533	0.24
58_L	94_I	0.533	0.24
15_H	29_I	0.531	0.23
63_H	158_L	0.530	0.23
243_L	277_A	0.530	0.23
88_I	314_V	0.529	0.23
159_E	297_F	0.529	0.23
71_E	308_G	0.528	0.23
18_E	49_E	0.527	0.23
114_S	281_E	0.527	0.23
81_K	123_S	0.526	0.23
38_A	216_N	0.524	0.23
24_G	64_L	0.524	0.23
53_T	56_I	0.524	0.23
115_R	171_V	0.523	0.23
133_P	284_N	0.523	0.23
61_L	227_F	0.522	0.23
31_V	317_R	0.521	0.23
86_A	307_D	0.520	0.23
254_F	291_N	0.519	0.23
198_I	283_V	0.519	0.23
35_E	196_I	0.519	0.23
216_N	219_I	0.518	0.23
47_S	310_K	0.518	0.23
163_D	172_K	0.517	0.23
231_V	315_L	0.517	0.23
22_G	33_E	0.515	0.23
36_A	42_L	0.515	0.23
262_H	273_D	0.515	0.23
115_R	314_V	0.514	0.22
35_E	114_S	0.514	0.22
35_E	38_A	0.513	0.22
148_F	241_W	0.513	0.22
235_E	290_E	0.513	0.22
34_E	191_V	0.513	0.22
93_G	238_I	0.512	0.22
49_E	307_D	0.512	0.22
83_P	175_V	0.512	0.22
51_V	90_F	0.511	0.22
286_P	317_R	0.510	0.22
44_D	80_L	0.510	0.22
18_E	21_S	0.510	0.22
138_K	142_M	0.510	0.22
158_L	217_P	0.509	0.22
17_R	64_L	0.509	0.22
37_K	74_K	0.508	0.22
155_K	231_V	0.507	0.22
54_I	234_E	0.507	0.22
100_V	124_L	0.506	0.22
43_N	293_L	0.506	0.22
170_S	270_Q	0.505	0.22
71_E	75_H	0.504	0.22
19_S	142_M	0.503	0.22
9_H	12_Y	0.500	0.22
10_T	18_E	0.500	0.22

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3tqcA	2	0.9561	100	0.516	Contact Map
4ne2A	2	0.953	100	0.633	Contact Map
4bfzA	2	0.9498	100	0.643	Contact Map
1odfA	1	0.768	100	0.689	Contact Map
2ga8A	1	0.6803	100	0.73	Contact Map
2jeoA	3	0.6144	99.9	0.797	Contact Map
1a7jA	5	0.6771	99.9	0.803	Contact Map
1rz3A	1	0.5455	99.8	0.817	Contact Map
3c8uA	1	0.6458	99.8	0.824	Contact Map
1uj2A	3	0.627	99.8	0.832	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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