YQJP - BACSU - GREMLIN Contacts

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YQJP - Probable metallo-hydrolase YqjP

UniProt:	P54553	Sequences: MTTEDVIAIRVPTPFAVGDVIVYLVKGDALTLIDAGPNTKEAARALQEQLAAVNVKLSDIEQVVLTHHHADHAGLLDVFSDEIEVIGHTFNEPYISQNQAFMDWQKRFFQKLLPELGVPFDTGKAEKLIRSAYAFSCTRSLTKSIREGMGIDGLEGWSVLEMPGHAESHIVLFHEKSGRMLGGDLLLANSSSNPILEAPKAGDVRSKPLVDYQRSLRRLSQLDPTIVFPGHGEPITSVQALIEKRFDKQRNRTEDVRRMLDEKPMTAFQVCQQLFPAVYEKELFLTMSETAGHLDVLEAEEAITSYWEGNTVYFKTMKR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	319 (269)
Sequences:	3917 (3100)
Seq/√Len:	189.0

ECOLI - YCBL GLO2
BACSU - YQJP YOBT YFLN YYBB PKSB YQGX
HALSA - Q9HRG5 Q9HNJ9 Q9HSD1 Q9HSH2 Q9HQ50 Q9HNJ2
SULSO - Q97VU4 Q97VU0 Q97UV2 Q97WC2 Q7LYK3 Q97U88 Q97UR2 Q97YZ2 Q97XZ1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
158_S	175_E	4.421	1.00
217_R	246_F	4.379	1.00
220_S	243_E	4.225	1.00
257_R	302_A	3.828	1.00
162_M	171_V	3.271	1.00
29_A	61_E	3.100	1.00
64_V	172_L	3.086	1.00
147_E	218_R	3.081	1.00
178_G	225_T	3.055	1.00
220_S	246_F	2.899	1.00
33_I	66_T	2.897	1.00
174_H	177_S	2.844	1.00
237_S	240_A	2.835	1.00
65_L	76_L	2.664	1.00
266_T	269_Q	2.630	1.00
33_I	181_L	2.627	1.00
31_T	62_Q	2.572	1.00
169_H	183_G	2.556	1.00
260_L	303_I	2.545	1.00
150_G	156_G	2.473	1.00
66_T	183_G	2.410	1.00
159_V	170_I	2.382	1.00
150_G	158_S	2.370	1.00
296_V	300_E	2.335	1.00
152_D	156_G	2.311	1.00
243_E	247_D	2.296	1.00
62_Q	86_I	2.207	1.00
84_E	143_K	2.040	1.00
159_V	172_L	2.011	1.00
62_Q	84_E	1.958	1.00
25_V	33_I	1.955	1.00
89_T	146_R	1.949	1.00
182_G	227_V	1.911	1.00
162_M	215_S	1.894	1.00
88_H	161_E	1.874	1.00
88_H	170_I	1.858	1.00
47_Q	82_E	1.836	1.00
162_M	169_H	1.815	1.00
179_R	228_F	1.789	1.00
208_P	211_D	1.781	1.00
86_I	143_K	1.779	1.00
213_Q	246_F	1.748	1.00
23_Y	181_L	1.729	1.00
217_R	221_Q	1.683	1.00
155_E	177_S	1.683	1.00
44_R	48_E	1.676	1.00
35_A	63_V	1.668	1.00
45_A	49_Q	1.661	1.00
218_R	221_Q	1.660	1.00
223_D	239_Q	1.641	1.00
156_G	176_K	1.581	1.00
298_E	305_S	1.579	1.00
49_Q	52_A	1.557	1.00
43_A	78_V	1.514	1.00
173_F	180_M	1.506	1.00
250_R	254_E	1.502	1.00
87_G	91_N	1.485	1.00
175_E	178_G	1.476	1.00
226_I	236_T	1.466	1.00
143_K	149_M	1.455	1.00
146_R	149_M	1.405	1.00
23_Y	228_F	1.371	1.00
157_W	174_H	1.366	1.00
229_P	232_G	1.364	1.00
217_R	250_R	1.359	1.00
265_M	273_Q	1.359	1.00
180_M	222_L	1.354	1.00
158_S	222_L	1.353	1.00
7_I	53_V	1.352	1.00
220_S	239_Q	1.343	1.00
47_Q	51_A	1.337	1.00
216_L	242_I	1.321	1.00
24_L	32_L	1.319	1.00
31_T	157_W	1.307	1.00
191_S	245_R	1.306	1.00
210_V	214_R	1.294	1.00
295_D	298_E	1.288	1.00
173_F	178_G	1.286	1.00
241_L	245_R	1.285	1.00
31_T	64_V	1.277	1.00
185_L	219_L	1.264	1.00
267_A	271_C	1.255	1.00
186_L	242_I	1.206	1.00
24_L	30_L	1.200	1.00
213_Q	250_R	1.192	1.00
147_E	161_E	1.180	1.00
80_S	142_T	1.177	1.00
179_R	226_I	1.173	1.00
173_F	224_P	1.166	1.00
22_V	46_L	1.164	1.00
150_G	175_E	1.164	1.00
270_V	290_T	1.164	1.00
217_R	220_S	1.157	1.00
220_S	242_I	1.157	1.00
22_V	35_A	1.153	1.00
265_M	269_Q	1.144	1.00
64_V	170_I	1.143	1.00
29_A	62_Q	1.128	1.00
207_K	210_V	1.114	1.00
80_S	85_V	1.100	1.00
43_A	47_Q	1.093	1.00
241_L	244_K	1.092	1.00
164_G	215_S	1.087	1.00
213_Q	217_R	1.087	1.00
224_P	227_V	1.087	1.00
259_M	273_Q	1.074	1.00
23_Y	230_G	1.072	1.00
48_E	52_A	1.071	1.00
158_S	173_F	1.070	1.00
26_K	30_L	1.070	1.00
178_G	223_D	1.060	1.00
145_I	159_V	1.056	1.00
42_A	45_A	1.051	1.00
25_V	157_W	1.046	1.00
248_K	252_R	1.046	1.00
155_E	174_H	1.032	1.00
212_Y	216_L	1.030	1.00
86_I	145_I	1.027	1.00
207_K	296_V	1.025	1.00
30_L	60_I	1.024	1.00
256_V	290_T	1.019	1.00
67_H	184_D	1.015	1.00
32_L	60_I	1.015	1.00
47_Q	50_L	1.010	1.00
254_E	258_R	1.010	1.00
43_A	75_L	1.010	1.00
34_D	67_H	1.001	0.99
91_N	166_A	0.999	0.99
40_K	44_R	0.989	0.99
72_H	184_D	0.984	0.99
30_L	55_V	0.984	0.99
247_D	251_N	0.981	0.99
92_E	96_S	0.977	0.99
139_R	142_T	0.969	0.99
42_A	46_L	0.966	0.99
26_K	58_S	0.961	0.99
282_E	285_L	0.959	0.99
78_V	82_E	0.954	0.99
262_E	265_M	0.952	0.99
46_L	49_Q	0.948	0.99
185_L	215_S	0.947	0.99
22_V	32_L	0.946	0.99
161_E	170_I	0.946	0.99
91_N	168_S	0.945	0.99
76_L	85_V	0.941	0.99
208_P	299_A	0.939	0.99
6_V	25_V	0.936	0.99
33_I	172_L	0.934	0.99
227_V	238_V	0.927	0.99
89_T	144_S	0.922	0.99
88_H	91_N	0.913	0.99
157_W	181_L	0.912	0.99
44_R	47_Q	0.910	0.99
51_A	82_E	0.910	0.99
160_L	173_F	0.909	0.99
165_H	184_D	0.906	0.99
226_I	234_P	0.905	0.99
239_Q	243_E	0.904	0.99
163_P	215_S	0.904	0.99
63_V	83_I	0.896	0.99
65_L	73_A	0.894	0.99
246_F	250_R	0.890	0.99
5_D	177_S	0.878	0.99
254_E	257_R	0.877	0.99
67_H	72_H	0.868	0.99
61_E	84_E	0.868	0.99
11_V	22_V	0.866	0.99
240_A	244_K	0.864	0.98
27_G	154_L	0.864	0.98
210_V	300_E	0.859	0.98
22_V	36_G	0.859	0.98
32_L	79_F	0.858	0.98
40_K	78_V	0.856	0.98
48_E	51_A	0.853	0.98
157_W	172_L	0.852	0.98
187_L	191_S	0.845	0.98
171_V	180_M	0.844	0.98
68_H	91_N	0.842	0.98
257_R	261_D	0.840	0.98
91_N	94_Y	0.839	0.98
187_L	190_S	0.836	0.98
269_Q	272_Q	0.836	0.98
35_A	76_L	0.835	0.98
171_V	185_L	0.833	0.98
84_E	142_T	0.830	0.98
145_I	172_L	0.824	0.98
274_L	290_T	0.823	0.98
63_V	79_F	0.814	0.98
262_E	273_Q	0.812	0.98
25_V	174_H	0.810	0.98
46_L	50_L	0.803	0.98
164_G	169_H	0.800	0.98
173_F	222_L	0.797	0.97
21_I	230_G	0.795	0.97
92_E	144_S	0.794	0.97
267_A	291_A	0.792	0.97
187_L	192_S	0.791	0.97
259_M	264_P	0.790	0.97
188_A	235_I	0.785	0.97
38_N	75_L	0.784	0.97
6_V	179_R	0.782	0.97
258_R	261_D	0.780	0.97
56_K	59_D	0.779	0.97
227_V	235_I	0.778	0.97
298_E	303_I	0.775	0.97
210_V	296_V	0.771	0.97
26_K	29_A	0.770	0.97
97_Q	100_A	0.766	0.97
249_Q	293_H	0.760	0.97
268_F	287_M	0.759	0.97
72_H	231_H	0.758	0.97
96_S	101_F	0.757	0.97
98_N	101_F	0.753	0.96
155_E	176_K	0.749	0.96
258_R	262_E	0.747	0.96
192_S	245_R	0.747	0.96
30_L	59_D	0.744	0.96
145_I	170_I	0.742	0.96
212_Y	249_Q	0.741	0.96
149_M	159_V	0.739	0.96
133_Y	136_S	0.739	0.96
216_L	246_F	0.729	0.96
13_T	16_A	0.723	0.96
62_Q	143_K	0.720	0.95
285_L	288_S	0.719	0.95
148_G	158_S	0.719	0.95
69_H	72_H	0.714	0.95
11_V	16_A	0.711	0.95
277_A	280_E	0.711	0.95
267_A	290_T	0.703	0.95
209_L	212_Y	0.697	0.95
181_L	228_F	0.697	0.95
24_L	60_I	0.697	0.95
235_I	241_L	0.696	0.95
80_S	139_R	0.694	0.94
6_V	174_H	0.692	0.94
185_L	212_Y	0.692	0.94
162_M	185_L	0.688	0.94
278_V	283_L	0.688	0.94
77_D	81_D	0.688	0.94
51_A	57_L	0.687	0.94
66_T	72_H	0.685	0.94
259_M	270_V	0.683	0.94
45_A	48_E	0.683	0.94
214_R	218_R	0.682	0.94
71_D	231_H	0.682	0.94
253_T	296_V	0.681	0.94
89_T	93_P	0.679	0.94
212_Y	252_R	0.679	0.94
271_C	287_M	0.677	0.94
32_L	35_A	0.677	0.94
9_I	24_L	0.677	0.94
282_E	289_E	0.676	0.94
66_T	69_H	0.676	0.94
42_A	47_Q	0.676	0.94
282_E	286_T	0.676	0.94
171_V	219_L	0.674	0.94
174_H	179_R	0.672	0.93
256_V	270_V	0.671	0.93
31_T	61_E	0.671	0.93
186_L	238_V	0.669	0.93
286_T	289_E	0.667	0.93
16_A	19_D	0.665	0.93
73_A	76_L	0.660	0.93
13_T	17_V	0.660	0.93
67_H	165_H	0.657	0.93
78_V	81_D	0.656	0.93
295_D	305_S	0.655	0.93
180_M	227_V	0.655	0.93
272_Q	283_L	0.654	0.92
40_K	43_A	0.653	0.92
211_D	214_R	0.652	0.92
298_E	304_T	0.651	0.92
50_L	53_V	0.649	0.92
249_Q	253_T	0.648	0.92
169_H	230_G	0.645	0.92
249_Q	252_R	0.645	0.92
217_R	243_E	0.640	0.92
276_P	283_L	0.638	0.92
261_D	304_T	0.637	0.91
28_D	153_G	0.637	0.91
247_D	250_R	0.636	0.91
148_G	159_V	0.635	0.91
98_N	102_M	0.635	0.91
21_I	229_P	0.634	0.91
256_V	293_H	0.634	0.91
31_T	155_E	0.632	0.91
98_N	103_D	0.631	0.91
166_A	169_H	0.630	0.91
92_E	95_I	0.629	0.91
21_I	232_G	0.628	0.91
76_L	80_S	0.628	0.91
242_I	246_F	0.626	0.91
38_N	43_A	0.626	0.91
20_V	230_G	0.624	0.91
77_D	137_C	0.623	0.91
301_E	306_Y	0.622	0.90
24_L	50_L	0.621	0.90
188_A	233_E	0.620	0.90
75_L	78_V	0.619	0.90
43_A	82_E	0.619	0.90
184_D	231_H	0.618	0.90
271_C	290_T	0.618	0.90
191_S	248_K	0.616	0.90
267_A	294_L	0.616	0.90
288_S	291_A	0.613	0.90
255_D	259_M	0.612	0.90
11_V	19_D	0.612	0.90
64_V	157_W	0.608	0.89
281_K	285_L	0.607	0.89
289_E	293_H	0.607	0.89
205_R	211_D	0.606	0.89
228_F	234_P	0.606	0.89
182_G	229_P	0.603	0.89
224_P	238_V	0.602	0.89
69_H	166_A	0.600	0.89
179_R	182_G	0.598	0.89
5_D	155_E	0.598	0.89
280_E	283_L	0.597	0.89
207_K	299_A	0.597	0.89
160_L	218_R	0.596	0.89
11_V	15_F	0.592	0.88
141_L	144_S	0.592	0.88
160_L	171_V	0.589	0.88
145_I	151_I	0.587	0.88
67_H	71_D	0.587	0.88
271_C	275_F	0.585	0.88
209_L	249_Q	0.584	0.88
284_F	288_S	0.583	0.87
296_V	299_A	0.582	0.87
293_H	296_V	0.582	0.87
215_S	218_R	0.581	0.87
12_P	45_A	0.581	0.87
270_V	274_L	0.578	0.87
272_Q	280_E	0.577	0.87
74_G	77_D	0.577	0.87
255_D	258_R	0.577	0.87
148_G	161_E	0.576	0.87
15_F	19_D	0.573	0.87
94_Y	97_Q	0.570	0.86
95_I	99_Q	0.567	0.86
298_E	301_E	0.565	0.86
208_P	295_D	0.564	0.86
68_H	73_A	0.562	0.86
174_H	181_L	0.561	0.85
256_V	274_L	0.561	0.85
23_Y	26_K	0.558	0.85
99_Q	102_M	0.558	0.85
276_P	279_Y	0.557	0.85
259_M	274_L	0.556	0.85
88_H	168_S	0.554	0.85
34_D	184_D	0.554	0.85
33_I	157_W	0.552	0.84
193_N	289_E	0.552	0.84
260_L	270_V	0.552	0.84
294_L	298_E	0.551	0.84
194_P	209_L	0.548	0.84
42_A	52_A	0.548	0.84
291_A	295_D	0.547	0.84
47_Q	57_L	0.545	0.84
251_N	255_D	0.545	0.84
5_D	179_R	0.541	0.83
212_Y	248_K	0.540	0.83
275_F	280_E	0.540	0.83
259_M	265_M	0.539	0.83
286_T	293_H	0.539	0.83
283_L	287_M	0.538	0.83
43_A	52_A	0.534	0.83
229_P	235_I	0.534	0.83
269_Q	273_Q	0.528	0.82
94_Y	98_N	0.527	0.82
145_I	149_M	0.523	0.81
87_G	92_E	0.523	0.81
10_R	19_D	0.523	0.81
20_V	183_G	0.522	0.81
93_P	100_A	0.520	0.81
64_V	151_I	0.518	0.81
287_M	291_A	0.518	0.81
267_A	287_M	0.518	0.81
161_E	218_R	0.517	0.80
29_A	59_D	0.516	0.80
132_A	260_L	0.515	0.80
224_P	239_Q	0.513	0.80
275_F	278_V	0.513	0.80
19_D	22_V	0.512	0.80
182_G	186_L	0.511	0.80
171_V	215_S	0.511	0.80
32_L	46_L	0.510	0.80
50_L	55_V	0.510	0.80
294_L	303_I	0.509	0.79
43_A	49_Q	0.508	0.79
131_S	134_A	0.507	0.79
171_V	230_G	0.507	0.79
73_A	87_G	0.505	0.79
245_R	249_Q	0.505	0.79
37_P	73_A	0.504	0.79
187_L	241_L	0.503	0.79
193_N	275_F	0.503	0.79
9_I	49_Q	0.502	0.79
36_G	212_Y	0.502	0.79
268_F	272_Q	0.502	0.79
77_D	138_T	0.501	0.78
248_K	251_N	0.500	0.78
259_M	262_E	0.500	0.78

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2zo4A	1	0.931	100	0.276	Contact Map
4ad9A	4	0.8307	100	0.396	Contact Map
2yheA	3	0.953	100	0.433	Contact Map
2cfuA	2	0.9467	100	0.447	Contact Map
4pdxA	2	0.9373	100	0.454	Contact Map
4nurA	2	0.953	100	0.459	Contact Map
2fhxA	2	0.7053	100	0.492	Contact Map
2vw8A	2	0.8589	100	0.493	Contact Map
3q6vA	1	0.6708	100	0.516	Contact Map
3vpeA	1	0.7147	100	0.525	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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