GREMLIN Database
YQJC - Uncharacterized protein YqjC
UniProt: P54540 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 140 (128)
Sequences: 5980 (3015)
Seq/√Len: 266.5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
19_S23_N4.5111.00
90_Q94_D3.5921.00
91_A95_Q3.4951.00
84_C87_E3.1461.00
89_L99_L3.1371.00
93_S102_R2.4161.00
13_S16_D2.3591.00
3_R81_L2.2341.00
29_F43_A2.0941.00
92_L97_V2.0551.00
39_K59_T1.9681.00
30_L46_Q1.7941.00
46_Q51_K1.7551.00
77_H127_E1.7181.00
5_D131_P1.7171.00
89_L93_S1.7121.00
30_L51_K1.7001.00
87_E91_A1.6921.00
86_S90_Q1.6911.00
98_Q117_S1.6751.00
65_H69_E1.6381.00
34_T41_N1.6181.00
66_L69_E1.5991.00
14_I43_A1.5391.00
12_F73_Q1.5251.00
86_S112_K1.4781.00
32_Q41_N1.4541.00
4_L78_I1.4371.00
92_L128_L1.4361.00
117_S125_L1.4051.00
22_E29_F1.3171.00
88_Q91_A1.3151.00
107_G112_K1.3091.00
57_P68_L1.2901.00
18_R45_F1.2861.00
42_V55_I1.2771.00
22_E45_F1.2621.00
47_A50_V1.2331.00
93_S99_L1.2261.00
15_K32_Q1.2231.00
28_A46_Q1.2181.00
19_S22_E1.2051.00
18_R22_E1.2011.00
62_S65_H1.1911.00
27_L47_A1.1901.00
88_Q92_L1.1801.00
82_C88_Q1.1681.00
80_F126_V1.1661.00
29_F32_Q1.1651.00
75_L78_I1.1491.00
79_A129_C1.1491.00
57_P62_S1.1491.00
16_D19_S1.1351.00
41_N58_L1.1251.00
57_P65_H1.1151.00
10_A64_V1.0951.00
41_N56_E1.0871.00
4_L50_V1.0871.00
3_R49_S1.0821.00
15_K43_A1.0741.00
17_A21_Y1.0671.00
11_V54_L1.0651.00
14_I18_R1.0521.00
23_N95_Q1.0511.00
5_D81_L1.0501.00
15_K19_S1.0481.00
101_D104_P1.0331.00
86_S103_F1.0251.00
19_S24_V1.0141.00
115_F127_E1.0111.00
114_A117_S1.0071.00
40_V55_I1.0061.00
20_F24_V1.0041.00
6_H79_A1.0001.00
11_V14_I0.9981.00
81_L131_P0.9971.00
91_A94_D0.9961.00
35_V38_Q0.9811.00
67_F74_G0.9611.00
67_F72_G0.9571.00
18_R43_A0.9421.00
8_G55_I0.9381.00
87_E90_Q0.9351.00
42_V53_E0.9221.00
36_E39_K0.9131.00
13_S19_S0.8981.00
17_A20_F0.8981.00
22_E28_A0.8961.00
85_L130_E0.8911.00
90_Q93_S0.8901.00
5_D79_A0.8751.00
101_D105_R0.8621.00
98_Q120_E0.8601.00
89_L114_A0.8561.00
86_S114_A0.8400.99
72_G79_A0.8340.99
127_E130_E0.8330.99
100_I117_S0.8320.99
85_L89_L0.8290.99
35_V40_V0.8280.99
17_A54_L0.8250.99
18_R29_F0.8250.99
47_A80_F0.8200.99
24_V95_Q0.8180.99
12_F16_D0.8170.99
10_A74_G0.8160.99
39_K58_L0.7980.99
120_E123_G0.7960.99
12_F68_L0.7940.99
32_Q43_A0.7880.99
100_I125_L0.7680.99
10_A76_H0.7670.99
7_I78_I0.7480.99
107_G115_F0.7210.98
62_S67_F0.7100.98
11_V52_L0.7050.98
120_E124_V0.6990.98
121_T124_V0.6950.98
117_S128_L0.6930.98
61_D65_H0.6900.98
85_L103_F0.6860.98
9_I75_L0.6770.98
112_K116_I0.6730.98
92_L116_I0.6720.98
29_F45_F0.6720.98
104_P107_G0.6650.97
46_Q49_S0.6640.97
9_I78_I0.6610.97
117_S127_E0.6610.97
78_I126_V0.6580.97
5_D51_K0.6580.97
42_V45_F0.6570.97
13_S56_E0.6490.97
85_L88_Q0.6470.97
85_L128_L0.6440.97
38_Q105_R0.6290.96
7_I113_I0.6260.96
9_I21_Y0.6240.96
63_P76_H0.6170.96
110_G116_I0.6070.96
116_I121_T0.6040.95
101_D106_Q0.6020.95
92_L99_L0.6010.95
39_K61_D0.5980.95
107_G113_I0.5960.95
67_F124_V0.5930.95
10_A68_L0.5880.95
17_A122_N0.5860.95
111_K114_A0.5850.95
11_V17_A0.5770.94
12_F69_E0.5750.94
9_I52_L0.5730.94
68_L76_H0.5670.94
20_F121_T0.5650.94
89_L101_D0.5650.94
82_C85_L0.5640.93
70_K73_Q0.5630.93
25_L49_S0.5620.93
110_G113_I0.5600.93
15_K56_E0.5590.93
55_I64_V0.5520.93
67_F76_H0.5500.93
64_V67_F0.5470.92
4_L9_I0.5470.92
66_L72_G0.5450.92
86_S105_R0.5440.92
44_F53_E0.5430.92
104_P115_F0.5410.92
69_E72_G0.5410.92
121_T126_V0.5380.92
11_V68_L0.5380.92
33_E55_I0.5350.92
14_I56_E0.5340.92
33_E40_V0.5340.92
111_K115_F0.5340.92
20_F25_L0.5310.91
112_K130_E0.5260.91
16_D122_N0.5260.91
113_I117_S0.5250.91
67_F73_Q0.5250.91
8_G76_H0.5240.91
103_F106_Q0.5210.91
112_K132_K0.5160.90
110_G114_A0.5160.90
44_F108_A0.5160.90
106_Q112_K0.5160.90
99_L116_I0.5150.90
104_P109_N0.5140.90
92_L95_Q0.5120.90
21_Y54_L0.5110.90
68_L74_G0.5060.89
113_I116_I0.5000.89
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3isqA 2 1 99.9 0.357 Contact Map
1jc4A 2 0.95 99.8 0.386 Contact Map
1sqdA 2 0.9643 99.8 0.387 Contact Map
1sp8A 2 0.9786 99.8 0.393 Contact Map
2r5vA 1 0.9643 99.8 0.396 Contact Map
3hdpA 2 0.9071 99.8 0.398 Contact Map
3gm5A 2 0.9071 99.8 0.4 Contact Map
3oa4A 2 0.9786 99.8 0.407 Contact Map
1ss4A 4 0.9214 99.8 0.414 Contact Map
1t47A 2 1 99.8 0.416 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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