GREMLIN Database
ARTQ - Arginine transport system permease protein ArtQ
UniProt: P54536 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 219 (206)
Sequences: 19470 (11687)
Seq/√Len: 814.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
151_V208_G3.2521.00
32_I97_S3.2501.00
123_A133_M3.1671.00
185_N188_E3.0871.00
92_A164_V2.9571.00
20_A24_K2.7871.00
129_P132_K2.7341.00
176_A193_A2.5711.00
43_C55_A2.5621.00
131_G135_K2.2651.00
124_V133_M2.2621.00
40_L105_S2.2151.00
206_F210_A2.2031.00
120_K133_M2.2011.00
65_T70_Q2.1491.00
119_Q141_Q2.0971.00
50_P54_I2.0231.00
120_K124_V1.9971.00
28_V93_V1.9571.00
174_R178_Q1.9291.00
50_P53_W1.8911.00
40_L101_A1.8891.00
44_K56_D1.8861.00
36_L101_A1.8541.00
49_R53_W1.8271.00
21_I24_K1.8181.00
41_S108_I1.7891.00
87_D90_W1.7351.00
16_L20_A1.7031.00
24_K89_F1.6971.00
202_L206_F1.6941.00
114_A145_N1.6581.00
210_A213_R1.6581.00
45_I113_N1.6441.00
19_L200_L1.6281.00
17_E20_A1.6201.00
30_A154_L1.5911.00
132_K136_D1.5911.00
74_V95_A1.5821.00
21_I169_L1.5801.00
206_F209_K1.5651.00
25_I164_V1.5561.00
198_Y202_L1.5521.00
129_P133_M1.5511.00
176_A189_P1.5421.00
26_V158_T1.5381.00
111_G146_I1.5231.00
14_F17_E1.5181.00
130_Y134_M1.4921.00
59_T105_S1.4851.00
33_G100_S1.4841.00
180_G186_Y1.4801.00
106_E109_R1.4671.00
38_I108_I1.4471.00
104_V150_I1.4071.00
40_L55_A1.3961.00
128_V132_K1.3891.00
124_V130_Y1.3741.00
207_I210_A1.3591.00
175_R178_Q1.2981.00
70_Q99_N1.2871.00
132_K135_K1.2791.00
104_V153_E1.2781.00
48_F51_F1.2751.00
28_V97_S1.2591.00
26_V161_S1.2581.00
108_I146_I1.2491.00
49_R52_I1.2481.00
48_F53_W1.2401.00
12_I16_L1.2261.00
174_R177_Y1.2241.00
109_R113_N1.2181.00
39_V43_C1.2131.00
24_K28_V1.2121.00
14_F175_R1.2051.00
52_I56_D1.2051.00
35_I39_V1.2041.00
32_I93_V1.1781.00
170_G174_R1.1761.00
89_F93_V1.1761.00
120_K138_L1.1741.00
53_W57_F1.1661.00
37_G104_V1.1431.00
123_A137_L1.1321.00
62_F98_L1.1321.00
210_A214_K1.1291.00
71_L95_A1.1261.00
90_W93_V1.1221.00
17_E21_I1.1181.00
54_I57_F1.1171.00
130_Y133_M1.1041.00
178_Q182_A1.1021.00
65_T99_N1.0991.00
112_I138_L1.0971.00
107_I153_E1.0961.00
93_V97_S1.0961.00
13_P17_E1.0921.00
60_S202_L1.0911.00
71_L164_V1.0871.00
177_Y180_G1.0541.00
88_Q168_G1.0491.00
43_C46_S1.0431.00
180_G190_L1.0371.00
26_V154_L1.0261.00
134_M139_L1.0251.00
45_I112_I1.0141.00
54_I58_Y1.0091.00
128_V136_D1.0081.00
44_K106_E1.0051.00
158_T200_L1.0021.00
55_A105_S0.9951.00
115_I142_A0.9871.00
70_Q74_V0.9791.00
30_A157_L0.9661.00
207_I211_V0.9511.00
209_K213_R0.9481.00
89_F169_L0.9381.00
29_S97_S0.9351.00
62_F102_A0.9351.00
107_I149_A0.9341.00
117_K121_E0.9211.00
47_T52_I0.9201.00
188_E191_I0.9191.00
34_L150_I0.9101.00
19_L196_I0.9071.00
57_F60_S0.9021.00
156_T160_E0.9011.00
67_L160_E0.8971.00
74_V91_A0.8961.00
43_C51_F0.8881.00
158_T204_L0.8881.00
134_M138_L0.8741.00
164_V171_D0.8731.00
31_I35_I0.8721.00
70_Q95_A0.8721.00
90_W94_V0.8691.00
58_Y101_A0.8691.00
209_K212_E0.8671.00
166_V170_G0.8611.00
22_T158_T0.8591.00
60_S198_Y0.8571.00
28_V32_I0.8531.00
41_S112_I0.8521.00
71_L163_I0.8511.00
48_F54_I0.8471.00
162_A197_Y0.8471.00
53_W56_D0.8421.00
100_S153_E0.8411.00
176_A180_G0.8411.00
183_T186_Y0.8381.00
203_I207_I0.8321.00
123_A128_V0.8301.00
115_I145_N0.8281.00
29_S157_L0.8281.00
18_G175_R0.8271.00
67_L99_N0.8261.00
42_L134_M0.8241.00
48_F52_I0.8221.00
145_N149_A0.8221.00
179_A189_P0.8211.00
41_S45_I0.8211.00
120_K130_Y0.7991.00
182_A185_N0.7991.00
73_I77_G0.7961.00
164_V169_L0.7961.00
58_Y62_F0.7941.00
96_L161_S0.7901.00
29_S96_L0.7901.00
88_Q169_L0.7871.00
112_I142_A0.7851.00
199_V203_I0.7741.00
118_G122_A0.7711.00
165_T174_R0.7631.00
13_P16_L0.7631.00
19_L172_V0.7631.00
170_G175_R0.7611.00
46_S130_Y0.7571.00
38_I139_L0.7561.00
56_D60_S0.7511.00
33_G104_V0.7461.00
27_V31_I0.7461.00
75_Y91_A0.7441.00
191_I195_L0.7431.00
46_S55_A0.7381.00
40_L43_C0.7381.00
117_K120_K0.7371.00
104_V108_I0.7351.00
108_I112_I0.7331.00
71_L167_I0.7331.00
100_S160_E0.7281.00
158_T201_V0.7271.00
73_I191_I0.7261.00
68_V166_V0.7261.00
36_L97_S0.7261.00
111_G145_N0.7221.00
25_I29_S0.7181.00
204_L208_G0.7121.00
92_A167_I0.7111.00
51_F54_I0.7101.00
21_I89_F0.7061.00
86_I90_W0.7031.00
25_I92_A0.7021.00
58_Y102_A0.7011.00
205_T209_K0.6951.00
192_I196_I0.6941.00
23_L27_V0.6911.00
44_K47_T0.6901.00
100_S157_L0.6881.00
195_L199_V0.6771.00
44_K59_T0.6731.00
72_M76_F0.6711.00
149_A152_N0.6701.00
28_V31_I0.6591.00
180_G189_P0.6571.00
162_A165_T0.6571.00
75_Y167_I0.6561.00
44_K52_I0.6561.00
99_N160_E0.6551.00
190_L193_A0.6541.00
77_G80_Q0.6521.00
100_S104_V0.6511.00
25_I169_L0.6501.00
36_L40_L0.6491.00
32_I35_I0.6481.00
22_T197_Y0.6471.00
26_V30_A0.6411.00
74_V79_P0.6321.00
118_G121_E0.6261.00
61_V65_T0.6261.00
74_V78_L0.6251.00
20_A23_L0.6251.00
211_V215_L0.6231.00
96_L157_L0.6201.00
191_I194_G0.6181.00
173_M193_A0.6181.00
88_Q91_A0.6161.00
11_Q179_A0.6151.00
28_V89_F0.6151.00
153_E156_T0.6141.00
43_C54_I0.6141.00
172_V175_R0.6101.00
62_F70_Q0.6041.00
97_S101_A0.6001.00
16_L19_L0.6001.00
138_L141_Q0.5981.00
129_P136_D0.5961.00
21_I171_D0.5951.00
92_A169_L0.5951.00
22_T26_V0.5941.00
147_S215_L0.5921.00
115_I138_L0.5911.00
47_T50_P0.5911.00
37_G108_I0.5901.00
117_K124_V0.5891.00
88_Q167_I0.5881.00
34_L108_I0.5861.00
148_P212_E0.5851.00
77_G81_L0.5811.00
173_M197_Y0.5771.00
173_M190_L0.5761.00
32_I36_L0.5741.00
38_I143_F0.5711.00
193_A196_I0.5691.00
198_Y201_V0.5681.00
64_G99_N0.5681.00
15_I196_I0.5651.00
37_G105_S0.5631.00
202_L205_T0.5631.00
75_Y88_Q0.5621.00
172_V196_I0.5611.00
35_I97_S0.5601.00
30_A34_L0.5571.00
24_K90_W0.5561.00
47_T130_Y0.5521.00
187_L191_I0.5521.00
176_A179_A0.5501.00
25_I89_F0.5481.00
112_I134_M0.5481.00
74_V77_G0.5451.00
208_G211_V0.5451.00
116_D145_N0.5441.00
144_K215_L0.5441.00
96_L164_V0.5431.00
147_S211_V0.5431.00
11_Q14_F0.5391.00
57_F61_V0.5381.00
203_I210_A0.5371.00
44_K105_S0.5371.00
179_A183_T0.5361.00
190_L194_G0.5351.00
35_I38_I0.5291.00
47_T51_F0.5291.00
121_E136_D0.5271.00
15_I176_A0.5271.00
40_L58_Y0.5271.00
37_G41_S0.5221.00
123_A126_L0.5191.00
72_M166_V0.5181.00
176_A190_L0.5171.00
36_L39_V0.5151.00
56_D59_T0.5131.00
203_I206_F0.5131.00
94_V97_S0.5121.00
154_L204_L0.5111.00
128_V133_M0.5101.00
87_D91_A0.5081.00
120_K134_M0.5061.00
111_G149_A0.5041.00
21_I25_I0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4ymuD 2 0.9817 100 0.372 Contact Map
2onkC 2 0.9589 100 0.443 Contact Map
3tuiA 2 0.9543 100 0.446 Contact Map
3d31C 2 0.9452 100 0.459 Contact Map
3rlfF 1 0.9406 99.9 0.461 Contact Map
4tquM 1 0.9863 99.9 0.481 Contact Map
3rlfG 1 0.9954 99.9 0.5 Contact Map
4tquN 1 0.9635 99.9 0.543 Contact Map
3w9iA 3 0.7854 12.3 0.944 Contact Map
3ne5A 3 0.8402 10.4 0.946 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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