PTB - BACSU - GREMLIN Contacts

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PTB - Probable phosphate butyryltransferase

UniProt:	P54530	Sequences: MKLKDLIGKASIHKNKTIAVAHAEDEEVIRAVKLAAEHLSARFLLTGDSKKLNELTSSMQGHQVEIVHANTPEESAKLAVRAVHHKTADVLMKGNVPTSVLLKAVLNRQEGLRSASVLSHVAVFDIPDFDRLMFVTDSAMNIAPSLEELRQILQNAVHVAHAVGNNMPKAAALAAVETVNPKMEATVNAAALAQMYKRGQIKGCIVDGPLALDNAVSQIAAAQKKISGDVAGNADILLVPTIEAGNILYKSLIYFAKASVAAVITGAKAPIALTSRADSAENKLYSIALAICASEEYTH	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	299 (287)
Sequences:	4109 (2389)
Seq/√Len:	141.0

ECOLI - EUTD PTA MAO2
BACSU - PTB PTAS
HALSA - Q9HPI2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
145_S	148_E	4.972	1.00
49_S	53_N	4.411	1.00
17_T	42_R	3.428	1.00
136_T	238_L	3.233	1.00
196_Y	206_V	3.084	1.00
18_I	90_V	3.049	1.00
191_A	194_Q	2.990	1.00
83_V	88_A	2.881	1.00
44_L	88_A	2.657	1.00
15_N	42_R	2.496	1.00
47_G	52_L	2.325	1.00
82_A	87_T	2.297	1.00
169_K	233_N	2.272	1.00
244_A	247_I	2.268	1.00
34_L	284_L	2.264	1.00
35_A	287_I	2.261	1.00
218_Q	222_A	2.252	1.00
49_S	68_H	2.177	1.00
173_L	247_I	2.044	1.00
146_L	191_A	2.002	1.00
33_K	37_E	1.983	1.00
17_T	44_L	1.971	1.00
20_V	287_I	1.929	1.00
194_Q	199_G	1.922	1.00
36_A	64_V	1.901	1.00
26_E	30_R	1.870	1.00
194_Q	197_K	1.867	1.00
154_Q	201_I	1.864	1.00
56_T	61_G	1.851	1.00
48_D	68_H	1.836	1.00
24_E	51_K	1.821	1.00
90_V	290_A	1.819	1.00
197_K	206_V	1.812	1.00
207_D	228_G	1.799	1.00
46_T	82_A	1.779	1.00
134_F	160_A	1.709	1.00
19_A	88_A	1.699	1.00
147_E	195_M	1.696	1.00
35_A	41_A	1.659	1.00
205_I	229_D	1.639	1.00
65_E	87_T	1.624	1.00
248_L	251_S	1.623	1.00
154_Q	200_Q	1.588	1.00
42_R	65_E	1.582	1.00
26_E	55_L	1.572	1.00
157_V	204_C	1.569	1.00
135_V	252_L	1.556	1.00
172_A	206_V	1.553	1.00
143_A	188_N	1.546	1.00
102_L	140_M	1.533	1.00
121_V	134_F	1.520	1.00
53_N	57_S	1.517	1.00
153_L	238_L	1.508	1.00
150_R	195_M	1.501	1.00
23_A	45_L	1.496	1.00
81_R	85_H	1.492	1.00
241_T	244_A	1.489	1.00
197_K	229_D	1.481	1.00
44_L	65_E	1.479	1.00
17_T	89_D	1.478	1.00
159_V	265_T	1.469	1.00
174_A	185_A	1.448	1.00
218_Q	233_N	1.429	1.00
195_M	200_Q	1.427	1.00
217_S	254_Y	1.423	1.00
17_T	65_E	1.419	1.00
175_A	183_M	1.413	1.00
61_G	64_V	1.408	1.00
126_I	258_A	1.403	1.00
158_H	201_I	1.401	1.00
33_K	59_M	1.393	1.00
109_Q	271_I	1.371	1.00
78_L	81_R	1.366	1.00
26_E	58_S	1.366	1.00
187_V	190_A	1.366	1.00
34_L	38_H	1.360	1.00
190_A	194_Q	1.357	1.00
207_D	229_D	1.355	1.00
196_Y	204_C	1.354	1.00
143_A	185_A	1.345	1.00
207_D	210_L	1.337	1.00
212_L	251_S	1.331	1.00
79_A	91_L	1.331	1.00
117_V	148_E	1.330	1.00
172_A	193_A	1.322	1.00
212_L	216_V	1.322	1.00
54_E	58_S	1.318	1.00
52_L	66_I	1.316	1.00
55_L	58_S	1.311	1.00
93_K	101_L	1.308	1.00
259_S	281_E	1.305	1.00
160_A	236_I	1.303	1.00
143_A	184_E	1.297	1.00
169_K	205_I	1.296	1.00
48_D	51_K	1.283	1.00
56_T	59_M	1.279	1.00
216_V	237_L	1.273	1.00
193_A	197_K	1.272	1.00
136_T	156_A	1.265	1.00
124_F	260_V	1.263	1.00
6_L	10_A	1.259	1.00
160_A	165_N	1.248	1.00
239_V	245_G	1.242	1.00
171_A	215_A	1.239	1.00
147_E	191_A	1.238	1.00
33_K	64_V	1.234	1.00
121_V	159_V	1.232	1.00
15_N	39_L	1.225	1.00
18_I	287_I	1.219	1.00
116_S	151_Q	1.213	1.00
92_M	286_S	1.191	1.00
153_L	170_A	1.190	1.00
105_V	271_I	1.179	1.00
151_Q	200_Q	1.179	1.00
34_L	37_E	1.177	1.00
239_V	248_L	1.176	1.00
171_A	234_A	1.166	1.00
131_R	233_N	1.166	1.00
135_V	239_V	1.162	0.99
149_L	189_A	1.153	0.99
174_A	183_M	1.145	0.99
172_A	196_Y	1.142	0.99
144_P	152_I	1.132	0.99
30_R	280_A	1.131	0.99
272_A	290_A	1.121	0.99
123_V	134_F	1.120	0.99
60_Q	63_Q	1.118	0.99
86_K	269_A	1.113	0.99
21_A	79_A	1.112	0.99
278_D	282_N	1.109	0.99
46_T	67_V	1.091	0.99
140_M	264_I	1.089	0.99
48_D	70_N	1.085	0.99
19_A	83_V	1.082	0.99
201_I	204_C	1.072	0.99
122_A	138_S	1.065	0.99
25_D	28_V	1.058	0.99
51_K	54_E	1.056	0.99
16_K	89_D	1.052	0.99
154_Q	196_Y	1.049	0.99
112_L	158_H	1.043	0.99
76_A	93_K	1.042	0.99
187_V	191_A	1.041	0.99
150_R	154_Q	1.032	0.99
69_A	75_S	1.030	0.99
185_A	243_E	1.016	0.99
70_N	73_E	1.012	0.99
221_A	231_A	1.011	0.99
214_N	220_A	1.010	0.99
158_H	161_H	1.006	0.99
105_V	267_A	1.002	0.98
76_A	96_V	0.989	0.98
19_A	82_A	0.986	0.98
125_D	259_S	0.986	0.98
29_I	59_M	0.982	0.98
219_I	222_A	0.980	0.98
84_H	269_A	0.977	0.98
130_D	233_N	0.972	0.98
46_T	79_A	0.971	0.98
252_L	256_A	0.959	0.98
175_A	243_E	0.957	0.98
195_M	199_G	0.955	0.98
161_H	203_G	0.954	0.98
72_P	78_L	0.954	0.98
19_A	46_T	0.954	0.98
6_L	9_K	0.949	0.98
212_L	237_L	0.947	0.98
153_L	172_A	0.946	0.98
146_L	193_A	0.946	0.98
118_L	267_A	0.941	0.98
8_G	11_S	0.938	0.98
35_A	284_L	0.935	0.98
179_V	209_P	0.928	0.97
100_V	103_K	0.919	0.97
193_A	206_V	0.918	0.97
138_S	249_Y	0.915	0.97
161_H	168_P	0.915	0.97
35_A	40_S	0.913	0.97
69_A	74_E	0.910	0.97
50_K	54_E	0.908	0.97
8_G	12_I	0.904	0.97
34_L	281_E	0.901	0.97
17_T	43_F	0.896	0.97
157_V	170_A	0.895	0.97
161_H	166_N	0.894	0.97
25_D	96_V	0.893	0.97
67_V	82_A	0.892	0.97
149_L	192_L	0.892	0.97
15_N	291_I	0.891	0.97
184_E	187_V	0.890	0.97
117_V	141_N	0.889	0.97
83_V	269_A	0.883	0.97
244_A	248_L	0.883	0.97
117_V	151_Q	0.873	0.96
50_K	53_N	0.872	0.96
284_L	288_A	0.870	0.96
49_S	71_T	0.870	0.96
119_S	152_I	0.868	0.96
172_A	189_A	0.854	0.96
30_R	59_M	0.852	0.96
219_I	223_Q	0.849	0.96
149_L	152_I	0.849	0.96
184_E	188_N	0.849	0.96
214_N	226_I	0.847	0.96
38_H	284_L	0.844	0.96
16_K	294_S	0.842	0.96
178_T	210_L	0.840	0.96
126_I	131_R	0.835	0.95
146_L	188_N	0.832	0.95
93_K	97_P	0.828	0.95
77_K	107_N	0.827	0.95
41_A	287_I	0.824	0.95
181_P	186_T	0.819	0.95
142_I	183_M	0.818	0.95
160_A	164_G	0.818	0.95
222_A	227_S	0.817	0.95
120_H	139_A	0.817	0.95
7_I	10_A	0.817	0.95
120_H	138_S	0.814	0.95
261_A	285_Y	0.807	0.94
205_I	231_A	0.807	0.94
121_V	160_A	0.806	0.94
20_V	32_V	0.806	0.94
126_I	256_A	0.806	0.94
141_N	152_I	0.805	0.94
183_M	186_T	0.803	0.94
46_T	78_L	0.796	0.94
4_K	8_G	0.795	0.94
106_L	118_L	0.795	0.94
221_A	230_V	0.794	0.94
230_V	233_N	0.792	0.94
149_L	188_N	0.785	0.94
29_I	52_L	0.782	0.93
19_A	79_A	0.781	0.93
82_A	85_H	0.777	0.93
211_A	214_N	0.773	0.93
36_A	63_Q	0.771	0.93
210_L	225_K	0.770	0.93
54_E	57_S	0.770	0.93
5_D	9_K	0.769	0.93
20_V	35_A	0.769	0.93
131_R	235_D	0.767	0.93
228_G	231_A	0.766	0.93
136_T	236_I	0.765	0.93
237_L	251_S	0.764	0.93
104_A	107_N	0.763	0.93
97_P	100_V	0.763	0.93
104_A	110_E	0.762	0.93
161_H	204_C	0.762	0.93
36_A	42_R	0.762	0.93
182_K	187_V	0.761	0.92
212_L	255_F	0.757	0.92
116_S	147_E	0.753	0.92
274_T	283_K	0.753	0.92
68_H	71_T	0.753	0.92
224_K	275_S	0.750	0.92
170_A	236_I	0.750	0.92
115_A	155_N	0.744	0.92
20_V	92_M	0.743	0.92
84_H	108_R	0.742	0.92
249_Y	260_V	0.741	0.91
121_V	265_T	0.741	0.91
147_E	200_Q	0.740	0.91
96_V	223_Q	0.737	0.91
121_V	136_T	0.736	0.91
103_K	106_L	0.736	0.91
84_H	268_K	0.732	0.91
103_K	107_N	0.730	0.91
90_V	291_I	0.729	0.91
99_S	103_K	0.726	0.91
156_A	236_I	0.725	0.91
90_V	272_A	0.724	0.91
196_Y	201_I	0.720	0.90
34_L	280_A	0.719	0.90
9_K	12_I	0.718	0.90
24_E	48_D	0.716	0.90
18_I	41_A	0.716	0.90
123_V	289_L	0.714	0.90
18_I	272_A	0.713	0.90
84_H	110_E	0.707	0.89
30_R	34_L	0.703	0.89
101_L	105_V	0.703	0.89
133_M	255_F	0.701	0.89
33_K	36_A	0.699	0.89
272_A	287_I	0.699	0.89
152_I	155_N	0.696	0.89
139_A	249_Y	0.695	0.89
74_E	100_V	0.692	0.88
250_K	276_R	0.691	0.88
122_A	260_V	0.690	0.88
124_F	135_V	0.688	0.88
153_L	206_V	0.688	0.88
29_I	55_L	0.687	0.88
169_K	234_A	0.687	0.88
148_E	151_Q	0.684	0.88
238_L	245_G	0.683	0.88
172_A	238_L	0.683	0.88
11_S	38_H	0.682	0.88
178_T	225_K	0.681	0.88
124_F	249_Y	0.679	0.88
50_K	70_N	0.675	0.87
185_A	241_T	0.673	0.87
112_L	268_K	0.672	0.87
48_D	52_L	0.667	0.87
117_V	152_I	0.665	0.86
98_T	275_S	0.661	0.86
80_V	91_L	0.659	0.86
76_A	91_L	0.659	0.86
263_V	286_S	0.653	0.85
53_N	66_I	0.652	0.85
221_A	232_G	0.651	0.85
67_V	72_P	0.650	0.85
207_D	230_V	0.647	0.85
154_Q	202_K	0.647	0.85
77_K	81_R	0.644	0.85
242_I	246_N	0.643	0.85
59_M	64_V	0.641	0.84
23_A	29_I	0.640	0.84
32_V	36_A	0.640	0.84
107_N	110_E	0.639	0.84
207_D	225_K	0.639	0.84
36_A	43_F	0.636	0.84
5_D	8_G	0.634	0.84
133_M	216_V	0.633	0.84
28_V	283_K	0.633	0.84
134_F	163_V	0.633	0.84
173_L	237_L	0.632	0.84
205_I	230_V	0.628	0.83
56_T	60_Q	0.628	0.83
43_F	287_I	0.624	0.83
120_H	264_I	0.624	0.83
70_N	74_E	0.621	0.82
77_K	104_A	0.618	0.82
78_L	82_A	0.618	0.82
175_A	181_P	0.615	0.82
98_T	102_L	0.614	0.82
24_E	75_S	0.612	0.82
190_A	193_A	0.611	0.81
45_L	64_V	0.608	0.81
239_V	244_A	0.608	0.81
119_S	155_N	0.602	0.80
25_D	95_N	0.602	0.80
112_L	115_A	0.600	0.80
45_L	52_L	0.597	0.80
211_A	277_A	0.596	0.80
16_K	291_I	0.595	0.80
125_D	132_L	0.594	0.80
127_P	257_K	0.592	0.79
173_L	212_L	0.592	0.79
29_I	33_K	0.591	0.79
39_L	63_Q	0.591	0.79
240_P	247_I	0.589	0.79
193_A	196_Y	0.589	0.79
113_R	268_K	0.589	0.79
21_A	88_A	0.588	0.79
27_E	280_A	0.586	0.79
75_S	97_P	0.585	0.79
210_L	214_N	0.583	0.78
76_A	104_A	0.583	0.78
177_E	214_N	0.578	0.78
210_L	226_I	0.576	0.78
23_A	52_L	0.576	0.78
139_A	275_S	0.574	0.77
153_L	192_L	0.573	0.77
126_I	257_K	0.572	0.77
183_M	242_I	0.572	0.77
6_L	11_S	0.571	0.77
68_H	72_P	0.569	0.77
165_N	168_P	0.569	0.77
126_I	255_F	0.568	0.77
259_S	285_Y	0.568	0.77
182_K	190_A	0.567	0.76
191_A	195_M	0.565	0.76
120_H	273_L	0.565	0.76
4_K	11_S	0.564	0.76
166_N	205_I	0.564	0.76
18_I	118_L	0.558	0.75
209_P	251_S	0.558	0.75
216_V	255_F	0.558	0.75
51_K	55_L	0.557	0.75
4_K	10_A	0.557	0.75
123_V	132_L	0.556	0.75
150_R	192_L	0.554	0.75
9_K	13_H	0.553	0.75
135_V	237_L	0.553	0.75
212_L	248_L	0.552	0.74
220_A	254_Y	0.552	0.74
246_N	249_Y	0.549	0.74
12_I	39_L	0.549	0.74
251_S	256_A	0.548	0.74
36_A	61_G	0.548	0.74
146_L	195_M	0.546	0.74
23_A	28_V	0.546	0.74
173_L	240_P	0.546	0.74
246_N	250_K	0.545	0.74
126_I	133_M	0.543	0.73
120_H	136_T	0.542	0.73
24_E	55_L	0.542	0.73
109_Q	268_K	0.541	0.73
150_R	196_Y	0.536	0.72
37_E	60_Q	0.536	0.72
149_L	172_A	0.536	0.72
234_A	237_L	0.534	0.72
75_S	96_V	0.534	0.72
246_N	276_R	0.534	0.72
77_K	110_E	0.532	0.72
147_E	150_R	0.531	0.72
155_N	158_H	0.530	0.72
214_N	221_A	0.525	0.71
183_M	187_V	0.525	0.71
221_A	227_S	0.525	0.71
21_A	46_T	0.524	0.71
41_A	288_A	0.523	0.71
80_V	104_A	0.523	0.71
212_L	252_L	0.523	0.71
193_A	210_L	0.522	0.70
110_E	268_K	0.522	0.70
49_S	66_I	0.519	0.70
27_E	95_N	0.517	0.70
141_N	148_E	0.517	0.70
144_P	148_E	0.514	0.69
254_Y	277_A	0.514	0.69
134_F	156_A	0.512	0.69
80_V	271_I	0.510	0.69
116_S	145_S	0.507	0.68
25_D	45_L	0.507	0.68
249_Y	274_T	0.507	0.68
123_V	261_A	0.506	0.68
235_D	244_A	0.502	0.67
229_D	233_N	0.500	0.67

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1ycoA	2	0.9064	100	0.33	Contact Map
3uf6A	2	0.9565	100	0.339	Contact Map
4e4rA	2	0.9699	100	0.344	Contact Map
1r5jA	4	0.9833	100	0.348	Contact Map
1td9A	3	0.9699	100	0.352	Contact Map
1vmiA	2	0.9766	100	0.354	Contact Map
2af4C	2	0.99	100	0.357	Contact Map
4jqpA	2	0.8796	100	0.533	Contact Map
3lxyA	2	0.8763	100	0.535	Contact Map
1vi1A	2	0.8729	100	0.539	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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