YQHG - BACSU - GREMLIN Contacts

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YQHG - Uncharacterized protein YqhG

UniProt:	P54508	Sequences: MRQQEVHDFLLRFFQANSCQIVDQGLGYMTVQLTVEMDKQIMNRPFYWHWREKTGGDPNPMKITFITDKENAPKDLDGEFIYFGAPRLFQIFKAVKQNGRFTRMYEKIESAGAKVPLQPWLGINVTISYQSDMKKDKLLSLGLHLVSGTIIEDFQSKLTQFSLTSQICDYCFTISPMIKPESGLKRMENYISKSAMQEPSDWAEQAVNRWKNDMTLLDKFYEHIEEKPEEYHLEKQALKTLYQPKISVEIENGGLFYLQNNISS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	264 (259)
Sequences:	192 (164)
Seq/√Len:	10.2

BACSU - YQHG

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
13_F	94_A	5.863	1.00
25_G	28_Y	5.133	1.00
239_K	243_Q	4.204	0.99
141_L	187_M	3.887	0.99
211_K	255_L	3.155	0.95
19_C	34_T	3.146	0.95
40_Q	97_Q	2.959	0.93
11_L	24_Q	2.665	0.88
137_K	198_E	2.652	0.88
34_T	114_K	2.633	0.87
150_I	187_M	2.537	0.85
30_T	64_T	2.497	0.84
132_D	206_A	2.444	0.83
141_L	150_I	2.418	0.82
131_S	241_L	2.417	0.82
39_K	52_E	2.382	0.81
9_F	100_R	2.377	0.81
191_I	246_I	2.318	0.79
241_L	251_E	2.228	0.76
124_N	140_S	2.200	0.75
213_D	237_A	2.057	0.70
135_K	178_I	2.029	0.69
22_V	156_S	1.969	0.67
124_N	252_N	1.969	0.67
192_S	248_V	1.948	0.66
66_I	78_G	1.894	0.63
23_D	165_S	1.852	0.62
93_K	207_V	1.851	0.62
13_F	37_M	1.821	0.60
106_E	172_F	1.798	0.59
74_K	191_I	1.790	0.59
154_F	209_R	1.774	0.58
135_K	144_H	1.762	0.58
103_R	136_D	1.693	0.54
70_E	191_I	1.656	0.53
5_E	20_Q	1.646	0.52
210_W	238_L	1.643	0.52
199_P	205_Q	1.627	0.51
32_Q	62_K	1.601	0.50
129_Y	200_S	1.586	0.49
147_S	172_F	1.566	0.49
97_Q	135_K	1.565	0.49
81_I	147_S	1.556	0.48
234_E	240_T	1.551	0.48
131_S	209_R	1.548	0.48
83_F	100_R	1.534	0.47
138_L	187_M	1.506	0.46
35_V	213_D	1.503	0.46
83_F	107_K	1.462	0.44
129_Y	255_L	1.451	0.43
122_G	197_Q	1.450	0.43
13_F	187_M	1.418	0.42
81_I	85_A	1.416	0.42
125_V	187_M	1.402	0.41
143_L	182_S	1.388	0.40
201_D	205_Q	1.383	0.40
35_V	39_K	1.381	0.40
65_F	94_A	1.374	0.40
2_R	9_F	1.366	0.39
41_I	244_P	1.355	0.39
40_Q	94_A	1.345	0.39
210_W	213_D	1.333	0.38
112_G	191_I	1.318	0.37
132_D	209_R	1.317	0.37
168_C	203_A	1.282	0.36
122_G	154_F	1.261	0.35
50_W	252_N	1.260	0.35
107_K	215_T	1.253	0.35
234_E	237_A	1.249	0.34
42_M	220_F	1.240	0.34
245_K	255_L	1.238	0.34
9_F	175_S	1.237	0.34
115_V	135_K	1.235	0.34
143_L	150_I	1.228	0.34
58_P	241_L	1.224	0.33
41_I	131_S	1.223	0.33
156_S	195_A	1.215	0.33
13_F	184_L	1.210	0.33
55_G	85_A	1.198	0.32
32_Q	60_P	1.185	0.32
55_G	134_K	1.182	0.32
143_L	179_K	1.175	0.31
8_D	31_V	1.174	0.31
41_I	104_M	1.158	0.31
2_R	100_R	1.144	0.30
45_P	145_L	1.140	0.30
205_Q	208_N	1.140	0.30
23_D	168_C	1.136	0.30
132_D	154_F	1.131	0.30
6_V	110_S	1.128	0.30
133_M	175_S	1.128	0.30
127_I	191_I	1.123	0.29
104_M	251_E	1.120	0.29
176_P	216_L	1.119	0.29
139_L	194_S	1.117	0.29
16_A	134_K	1.115	0.29
158_L	247_S	1.109	0.29
1_M	92_F	1.098	0.28
250_I	253_G	1.095	0.28
209_R	214_M	1.094	0.28
242_Y	256_F	1.089	0.28
217_L	253_G	1.089	0.28
73_P	173_T	1.089	0.28
30_T	41_I	1.079	0.28
155_Q	159_T	1.076	0.28
236_Q	239_K	1.074	0.28
93_K	191_I	1.072	0.27
144_H	147_S	1.066	0.27
29_M	65_F	1.064	0.27
239_K	245_K	1.059	0.27
121_L	142_G	1.059	0.27
135_K	249_E	1.059	0.27
136_D	170_Y	1.051	0.27
181_E	205_Q	1.048	0.27
34_T	37_M	1.045	0.26
67_T	219_K	1.043	0.26
61_M	187_M	1.036	0.26
143_L	177_M	1.033	0.26
5_E	179_K	1.028	0.26
20_Q	141_L	1.023	0.26
36_E	188_E	1.017	0.25
65_F	77_D	1.016	0.25
50_W	86_P	1.015	0.25
86_P	119_P	1.010	0.25
8_D	18_S	1.007	0.25
176_P	182_S	1.006	0.25
13_F	212_N	1.004	0.25
71_N	161_F	1.003	0.25
19_C	37_M	1.000	0.25
40_Q	157_K	0.996	0.25
93_K	255_L	0.993	0.25
244_P	258_L	0.992	0.25
40_Q	219_K	0.979	0.24
125_V	191_I	0.978	0.24
52_E	132_D	0.975	0.24
64_T	106_E	0.975	0.24
131_S	206_A	0.974	0.24
14_F	117_L	0.970	0.24
19_C	62_K	0.966	0.24
36_E	106_E	0.963	0.24
4_Q	255_L	0.963	0.24
210_W	237_A	0.952	0.23
205_Q	251_E	0.952	0.23
97_Q	105_Y	0.949	0.23
97_Q	101_F	0.949	0.23
120_W	254_G	0.948	0.23
58_P	154_F	0.948	0.23
51_R	98_N	0.946	0.23
93_K	233_L	0.945	0.23
13_F	26_L	0.941	0.23
156_S	162_S	0.940	0.23
129_Y	190_Y	0.938	0.23
104_M	256_F	0.936	0.23
12_R	95_V	0.929	0.23
183_G	242_Y	0.927	0.22
41_I	214_M	0.927	0.22
21_I	199_P	0.925	0.22
67_T	82_Y	0.920	0.22
10_L	81_I	0.919	0.22
58_P	254_G	0.918	0.22
95_V	108_I	0.908	0.22
99_G	183_G	0.906	0.22
21_I	201_D	0.901	0.22
83_F	238_L	0.899	0.22
83_F	104_M	0.898	0.22
50_W	257_Y	0.891	0.21
15_Q	191_I	0.891	0.21
22_V	30_T	0.891	0.21
43_N	252_N	0.891	0.21
116_P	196_M	0.887	0.21
143_L	195_A	0.886	0.21
65_F	69_K	0.885	0.21
152_E	194_S	0.875	0.21
154_F	221_Y	0.875	0.21
173_T	182_S	0.873	0.21
116_P	235_K	0.869	0.21
41_I	50_W	0.867	0.21
55_G	88_L	0.863	0.20
42_M	186_R	0.863	0.20
222_E	238_L	0.861	0.20
140_S	252_N	0.860	0.20
55_G	143_L	0.859	0.20
118_Q	144_H	0.859	0.20
86_P	220_F	0.858	0.20
58_P	209_R	0.851	0.20
206_A	241_L	0.850	0.20
78_G	220_F	0.846	0.20
37_M	99_G	0.844	0.20
137_K	230_E	0.842	0.20
211_K	225_E	0.841	0.20
60_P	133_M	0.835	0.20
67_T	234_E	0.834	0.20
183_G	216_L	0.833	0.20
62_K	76_L	0.832	0.20
151_I	158_L	0.831	0.20
90_Q	256_F	0.829	0.19
106_E	161_F	0.826	0.19
170_Y	173_T	0.826	0.19
179_K	195_A	0.825	0.19
7_H	67_T	0.824	0.19
110_S	204_E	0.820	0.19
103_R	176_P	0.817	0.19
57_D	83_F	0.815	0.19
60_P	172_F	0.815	0.19
25_G	70_E	0.815	0.19
51_R	56_G	0.809	0.19
135_K	227_K	0.805	0.19
11_L	20_Q	0.805	0.19
99_G	114_K	0.803	0.19
5_E	245_K	0.801	0.19
65_F	183_G	0.801	0.19
128_S	203_A	0.800	0.19
34_T	99_G	0.798	0.19
214_M	239_K	0.797	0.19
37_M	62_K	0.796	0.19
152_E	155_Q	0.793	0.18
36_E	65_F	0.790	0.18
7_H	40_Q	0.790	0.18
52_E	154_F	0.784	0.18
42_M	257_Y	0.783	0.18
4_Q	64_T	0.782	0.18
208_N	212_N	0.781	0.18
50_W	251_E	0.779	0.18
91_I	181_E	0.778	0.18
191_I	227_K	0.772	0.18
4_Q	30_T	0.772	0.18
115_V	205_Q	0.771	0.18
112_G	211_K	0.768	0.18
242_Y	254_G	0.768	0.18
22_V	110_S	0.768	0.18
147_S	187_M	0.767	0.18
165_S	199_P	0.764	0.18
119_P	217_L	0.760	0.18
39_K	132_D	0.759	0.18
107_K	196_M	0.758	0.17
19_C	218_D	0.757	0.17
43_N	82_Y	0.754	0.17
40_Q	89_F	0.748	0.17
169_D	173_T	0.743	0.17
12_R	208_N	0.743	0.17
37_M	117_L	0.742	0.17
129_Y	217_L	0.741	0.17
216_L	238_L	0.739	0.17
19_C	152_E	0.734	0.17
191_I	228_P	0.731	0.17
35_V	52_E	0.729	0.17
119_P	176_P	0.726	0.17
144_H	218_D	0.722	0.17
131_S	168_C	0.718	0.16
108_I	171_C	0.714	0.16
154_F	206_A	0.713	0.16
46_F	56_G	0.710	0.16
79_E	156_S	0.707	0.16
22_V	184_L	0.704	0.16
131_S	154_F	0.702	0.16
169_D	176_P	0.701	0.16
95_V	180_P	0.699	0.16
6_V	155_Q	0.699	0.16
231_Y	235_K	0.697	0.16
101_F	104_M	0.697	0.16
58_P	131_S	0.695	0.16
215_T	222_E	0.692	0.16
22_V	157_K	0.689	0.16
109_E	185_K	0.687	0.16
105_Y	257_Y	0.685	0.16
8_D	112_G	0.682	0.16
37_M	50_W	0.681	0.16
57_D	107_K	0.679	0.15
107_K	168_C	0.679	0.15
8_D	93_K	0.679	0.15
144_H	175_S	0.676	0.15
120_W	256_F	0.675	0.15
61_M	88_L	0.674	0.15
12_R	259_Q	0.674	0.15
87_R	90_Q	0.673	0.15
69_K	224_I	0.671	0.15
51_R	210_W	0.671	0.15
14_F	140_S	0.669	0.15
167_I	213_D	0.668	0.15
6_V	221_Y	0.665	0.15
68_D	71_N	0.665	0.15
223_H	236_Q	0.662	0.15
105_Y	141_L	0.657	0.15
37_M	116_P	0.655	0.15
110_S	160_Q	0.655	0.15
19_C	114_K	0.655	0.15
86_P	252_N	0.653	0.15
36_E	153_D	0.651	0.15
41_I	183_G	0.651	0.15
19_C	191_I	0.648	0.15
99_G	138_L	0.647	0.15
94_A	98_N	0.639	0.15
173_T	176_P	0.639	0.15
106_E	165_S	0.637	0.14
158_L	162_S	0.637	0.14
55_G	183_G	0.633	0.14
30_T	219_K	0.630	0.14
138_L	156_S	0.625	0.14
18_S	40_Q	0.622	0.14
203_A	221_Y	0.620	0.14
23_D	199_P	0.619	0.14
141_L	191_I	0.615	0.14
116_P	162_S	0.614	0.14
163_L	222_E	0.612	0.14
95_V	126_T	0.610	0.14
81_I	243_Q	0.608	0.14
15_Q	204_E	0.607	0.14
13_F	34_T	0.606	0.14
50_W	89_F	0.605	0.14
167_I	170_Y	0.604	0.14
206_A	209_R	0.601	0.14
163_L	258_L	0.598	0.14
13_F	41_I	0.594	0.14
164_T	196_M	0.594	0.14
27_G	219_K	0.591	0.13
186_R	234_E	0.591	0.13
45_P	119_P	0.583	0.13
122_G	256_F	0.583	0.13
39_K	59_N	0.580	0.13
140_S	155_Q	0.580	0.13
43_N	142_G	0.580	0.13
13_F	150_I	0.580	0.13
17_N	56_G	0.579	0.13
18_S	96_K	0.578	0.13
195_A	200_S	0.574	0.13
18_S	62_K	0.572	0.13
92_F	106_E	0.572	0.13
237_A	240_T	0.567	0.13
42_M	172_F	0.566	0.13
6_V	52_E	0.564	0.13
36_E	116_P	0.564	0.13
91_I	118_Q	0.563	0.13
11_L	29_M	0.563	0.13
158_L	163_L	0.562	0.13
106_E	187_M	0.561	0.13
39_K	105_Y	0.561	0.13
182_S	220_F	0.560	0.13
104_M	163_L	0.560	0.13
164_T	222_E	0.560	0.13
103_R	220_F	0.559	0.13
103_R	216_L	0.555	0.13
104_M	243_Q	0.553	0.13
156_S	246_I	0.553	0.13
127_I	206_A	0.550	0.13
52_E	155_Q	0.549	0.13
30_T	76_L	0.548	0.13
180_P	213_D	0.548	0.13
114_K	185_K	0.547	0.13
50_W	254_G	0.547	0.13
122_G	127_I	0.547	0.13
67_T	178_I	0.545	0.12
96_K	193_K	0.545	0.12
105_Y	200_S	0.545	0.12
151_I	157_K	0.544	0.12
79_E	127_I	0.544	0.12
81_I	182_S	0.542	0.12
179_K	196_M	0.540	0.12
115_V	149_T	0.539	0.12
164_T	168_C	0.538	0.12
138_L	248_V	0.538	0.12
27_G	99_G	0.534	0.12
119_P	253_G	0.533	0.12
40_Q	98_N	0.533	0.12
95_V	99_G	0.532	0.12
16_A	55_G	0.530	0.12
186_R	220_F	0.529	0.12
123_I	157_K	0.529	0.12
26_L	113_A	0.526	0.12
93_K	222_E	0.524	0.12
220_F	234_E	0.522	0.12
58_P	80_F	0.516	0.12
242_Y	253_G	0.515	0.12
37_M	234_E	0.514	0.12
152_E	181_E	0.513	0.12
187_M	191_I	0.512	0.12
1_M	252_N	0.511	0.12
31_V	126_T	0.511	0.12
9_F	197_Q	0.511	0.12
86_P	176_P	0.509	0.12
177_M	182_S	0.506	0.12
86_P	182_S	0.506	0.12
171_C	182_S	0.505	0.12
205_Q	212_N	0.505	0.12
29_M	204_E	0.503	0.12
10_L	14_F	0.502	0.12
68_D	135_K	0.502	0.12
153_D	160_Q	0.501	0.12
164_T	249_E	0.500	0.12

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3dlmA	1	0.2765	83.5	0.96	Contact Map
3dmqA	1	0.8598	46.8	0.969	Contact Map
1k3rA	2	0.4583	18.8	0.975	Contact Map
1fjeB	1	0.4962	16.2	0.975	Contact Map
2cqgA	1	0.2652	14.2	0.976	Contact Map
2dnqA	1	0.2614	10.5	0.977	Contact Map
2m8hA	1	0.25	9.8	0.978	Contact Map
2d9oA	1	0.2652	9.8	0.978	Contact Map
2cpzA	1	0.2727	9.6	0.978	Contact Map
3ue2A	1	0.2614	9.1	0.978	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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