YQGT - BACSU - GREMLIN Contacts

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YQGT - Uncharacterized protein YqgT

UniProt:	P54497	Sequences: MMAFITVKPEIKNNLANVAKELKIDEELLKSANRSAQKHQLYCPGYVIEEHSGKELQTIQDIKRFLQPRQLKLSDSWIEQEKIYDDSAVEKEIKKIIDVFPFVSCREIGRSVLGRPIWELKAGGEHAVKKVHMNASFHANEWITTSVLLKWFKEYCMSLCCNSPFFGFSPIKLFNSTSLSLVPLVNPDGVDLVLNGSEVMGARRDELERLNEHRPNFNEWKANINGVDLNKQFPSLWEIEKYRKPTAPSYRDFPGISPLTEPESIAMYRLITENPPDRLLALHTQGEEIYWGYKGLEPEESAAVIKEFEELSGNIYKGVRDIDSYAGFRDWFIHHYFKEGYTVELGKGQNPLPFQQFSHIYNATSGILWRALFFHE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	376 (329)
Sequences:	2093 (1328)
Seq/√Len:	73.2

ECOLI - MPAA
BACSU - YQGT

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
135_A	148_L	5.711	1.00
160_C	171_I	5.098	1.00
203_R	229_L	4.144	1.00
259_L	268_Y	3.603	1.00
136_S	145_T	3.501	1.00
117_I	266_A	3.438	1.00
86_D	90_E	3.334	1.00
112_V	206_E	3.153	1.00
107_E	116_P	2.919	1.00
234_P	259_L	2.885	1.00
110_R	116_P	2.868	1.00
115_R	191_D	2.862	1.00
134_N	281_A	2.792	1.00
94_K	118_W	2.638	1.00
63_K	67_Q	2.635	1.00
180_S	270_L	2.535	1.00
236_L	239_I	2.476	1.00
148_L	282_L	2.414	1.00
224_I	249_S	2.200	1.00
305_I	318_G	2.187	1.00
94_K	105_C	2.185	1.00
135_A	144_T	2.154	1.00
61_D	64_R	2.150	1.00
262_P	266_A	2.144	1.00
122_A	152_F	2.136	1.00
238_E	254_P	2.110	1.00
303_A	370_R	2.094	1.00
312_S	362_N	2.093	1.00
283_H	344_E	2.082	1.00
235_S	334_H	2.052	1.00
80_Q	149_L	2.049	1.00
117_I	182_V	2.039	1.00
109_G	266_A	2.036	1.00
85_D	191_D	2.030	1.00
329_R	342_T	2.020	1.00
137_F	233_F	1.988	1.00
89_V	184_L	1.981	1.00
107_E	110_R	1.942	1.00
311_L	366_G	1.884	1.00
227_V	261_E	1.879	1.00
282_L	368_L	1.854	1.00
159_L	175_N	1.845	1.00
316_Y	360_I	1.841	1.00
230_N	344_E	1.829	1.00
301_S	318_G	1.801	1.00
271_I	336_Y	1.792	1.00
85_D	194_L	1.784	1.00
124_G	175_N	1.759	1.00
87_S	191_D	1.733	1.00
119_E	182_V	1.728	1.00
130_K	180_S	1.706	1.00
234_P	268_Y	1.665	1.00
111_S	262_P	1.663	1.00
108_I	266_A	1.652	1.00
106_R	119_E	1.639	1.00
64_R	68_P	1.637	1.00
152_F	181_L	1.635	1.00
120_L	152_F	1.633	1.00
279_L	328_F	1.610	0.99
272_T	336_Y	1.605	0.99
259_L	264_S	1.605	0.99
253_F	256_I	1.598	0.99
169_S	373_F	1.585	0.99
301_S	305_I	1.575	0.99
227_V	260_T	1.573	0.99
200_M	204_R	1.571	0.99
122_A	174_F	1.567	0.99
290_Y	321_D	1.557	0.99
96_I	103_V	1.555	0.99
289_I	343_V	1.538	0.99
93_I	105_C	1.534	0.99
42_Y	62_I	1.531	0.99
121_K	178_S	1.520	0.99
171_I	175_N	1.512	0.99
121_K	180_S	1.511	0.99
159_L	171_I	1.504	0.99
132_H	182_V	1.503	0.99
322_I	344_E	1.487	0.99
90_E	118_W	1.486	0.99
123_G	178_S	1.486	0.99
100_F	157_M	1.473	0.99
191_D	195_N	1.451	0.99
38_K	43_C	1.433	0.99
103_V	120_L	1.432	0.99
174_F	179_L	1.422	0.99
122_A	181_L	1.404	0.98
145_T	190_V	1.401	0.98
244_K	254_P	1.390	0.98
192_L	204_R	1.373	0.98
316_Y	319_V	1.368	0.98
97_I	103_V	1.358	0.98
30_K	59_I	1.339	0.98
40_Q	43_C	1.333	0.98
343_V	367_I	1.317	0.98
324_S	327_G	1.297	0.97
42_Y	45_G	1.296	0.97
143_I	357_F	1.289	0.97
93_I	120_L	1.289	0.97
48_I	53_G	1.279	0.97
314_N	364_T	1.267	0.97
59_I	65_F	1.267	0.97
271_I	332_F	1.263	0.97
91_K	95_K	1.252	0.97
159_L	174_F	1.245	0.97
293_Y	334_H	1.243	0.97
272_T	331_W	1.242	0.97
143_I	284_T	1.239	0.97
108_I	119_E	1.236	0.97
112_V	203_R	1.235	0.97
190_V	194_L	1.234	0.97
142_W	193_V	1.233	0.97
230_N	283_H	1.230	0.97
85_D	88_A	1.188	0.96
38_K	46_Y	1.179	0.96
205_D	261_E	1.176	0.95
282_L	364_T	1.176	0.95
125_E	128_V	1.170	0.95
207_L	222_A	1.167	0.95
269_R	272_T	1.166	0.95
201_G	283_H	1.156	0.95
332_F	340_G	1.155	0.95
352_L	360_I	1.154	0.95
138_H	141_E	1.152	0.95
113_L	204_R	1.151	0.95
366_G	369_W	1.143	0.95
27_E	41_L	1.140	0.95
105_C	120_L	1.139	0.95
233_F	264_S	1.138	0.95
155_Y	179_L	1.125	0.94
135_A	282_L	1.123	0.94
105_C	118_W	1.118	0.94
271_I	331_W	1.117	0.94
129_K	277_D	1.117	0.94
232_Q	260_T	1.114	0.94
201_G	344_E	1.105	0.94
124_G	128_V	1.103	0.94
286_G	321_D	1.100	0.94
131_V	372_L	1.100	0.94
144_T	148_L	1.099	0.94
349_Q	352_L	1.096	0.93
302_A	306_K	1.095	0.93
155_Y	170_P	1.091	0.93
92_E	149_L	1.089	0.93
130_K	178_S	1.078	0.93
43_C	46_Y	1.078	0.93
308_F	364_T	1.072	0.93
31_S	40_Q	1.072	0.93
150_K	361_Y	1.065	0.92
290_Y	294_K	1.059	0.92
324_S	329_R	1.045	0.92
136_S	190_V	1.038	0.91
107_E	118_W	1.033	0.91
111_S	203_R	1.031	0.91
268_Y	272_T	1.029	0.91
108_I	182_V	1.027	0.91
38_K	42_Y	1.025	0.91
144_T	345_L	1.015	0.90
230_N	322_I	1.014	0.90
79_E	84_Y	1.006	0.90
139_A	283_H	0.994	0.90
29_L	32_A	0.993	0.90
133_M	181_L	0.989	0.89
327_G	331_W	0.989	0.89
192_L	196_G	0.987	0.89
154_E	158_S	0.982	0.89
103_V	122_A	0.981	0.89
147_V	361_Y	0.979	0.89
279_L	332_F	0.979	0.89
291_W	333_I	0.974	0.89
37_Q	40_Q	0.970	0.88
278_R	371_A	0.969	0.88
48_I	55_E	0.967	0.88
28_L	42_Y	0.966	0.88
110_R	114_G	0.965	0.88
235_S	293_Y	0.963	0.88
37_Q	43_C	0.961	0.88
80_Q	153_K	0.960	0.88
87_S	90_E	0.956	0.88
62_I	65_F	0.955	0.88
28_L	31_S	0.954	0.88
305_I	308_F	0.954	0.88
102_F	174_F	0.952	0.87
81_E	358_S	0.950	0.87
229_L	264_S	0.946	0.87
268_Y	331_W	0.944	0.87
239_I	244_K	0.939	0.87
119_E	180_S	0.936	0.87
44_P	47_V	0.925	0.86
201_G	228_D	0.923	0.86
111_S	187_P	0.912	0.85
185_V	267_M	0.911	0.85
265_I	269_R	0.902	0.84
128_V	178_S	0.901	0.84
161_C	171_I	0.901	0.84
223_N	247_A	0.900	0.84
132_H	271_I	0.898	0.84
100_F	156_C	0.893	0.84
66_L	69_R	0.890	0.84
37_Q	44_P	0.888	0.84
348_G	353_P	0.887	0.83
346_G	349_Q	0.887	0.83
32_A	35_S	0.887	0.83
104_S	121_K	0.884	0.83
334_H	337_F	0.884	0.83
304_V	371_A	0.881	0.83
141_E	283_H	0.878	0.83
346_G	352_L	0.876	0.83
308_F	312_S	0.875	0.83
358_S	362_N	0.872	0.82
93_I	152_F	0.871	0.82
97_I	105_C	0.869	0.82
314_N	319_V	0.863	0.82
192_L	200_M	0.862	0.82
352_L	356_Q	0.862	0.82
207_L	227_V	0.859	0.81
358_S	361_Y	0.855	0.81
312_S	366_G	0.855	0.81
309_E	315_I	0.851	0.81
49_E	55_E	0.846	0.80
308_F	314_N	0.839	0.80
173_L	179_L	0.837	0.80
256_I	260_T	0.835	0.80
361_Y	365_S	0.834	0.79
259_L	265_I	0.827	0.79
83_I	353_P	0.825	0.79
235_S	327_G	0.823	0.79
345_L	360_I	0.823	0.79
301_S	313_G	0.823	0.79
111_S	185_V	0.821	0.78
94_K	97_I	0.821	0.78
182_V	267_M	0.821	0.78
296_L	299_E	0.817	0.78
231_K	344_E	0.810	0.77
37_Q	42_Y	0.810	0.77
353_P	357_F	0.809	0.77
292_G	333_I	0.809	0.77
191_D	194_L	0.808	0.77
128_V	173_L	0.807	0.77
304_V	308_F	0.806	0.77
184_L	190_V	0.806	0.77
244_K	325_Y	0.802	0.77
133_M	148_L	0.801	0.77
287_E	352_L	0.800	0.77
30_K	42_Y	0.796	0.76
106_R	270_L	0.794	0.76
102_F	159_L	0.791	0.76
307_E	370_R	0.788	0.76
31_S	38_K	0.787	0.75
86_D	191_D	0.783	0.75
133_M	282_L	0.783	0.75
39_H	42_Y	0.781	0.75
308_F	367_I	0.779	0.75
108_I	116_P	0.778	0.75
37_Q	41_L	0.778	0.75
96_I	152_F	0.777	0.74
259_L	272_T	0.776	0.74
83_I	146_S	0.776	0.74
132_H	267_M	0.773	0.74
170_P	174_F	0.773	0.74
59_I	62_I	0.770	0.74
49_E	56_L	0.769	0.74
109_G	117_I	0.768	0.74
98_D	101_P	0.766	0.73
104_S	123_G	0.766	0.73
37_Q	45_G	0.766	0.73
231_K	322_I	0.759	0.73
54_K	60_Q	0.750	0.72
34_R	37_Q	0.742	0.71
33_N	36_A	0.742	0.71
294_K	324_S	0.741	0.71
29_L	35_S	0.737	0.71
89_V	149_L	0.735	0.70
92_E	153_K	0.733	0.70
247_A	250_Y	0.733	0.70
36_A	43_C	0.730	0.70
234_P	335_H	0.729	0.70
32_A	39_H	0.728	0.70
130_K	270_L	0.725	0.69
293_Y	343_V	0.722	0.69
300_E	308_F	0.719	0.69
133_M	151_W	0.719	0.69
244_K	252_D	0.717	0.68
201_G	322_I	0.713	0.68
160_C	175_N	0.712	0.68
232_Q	261_E	0.711	0.68
112_V	205_D	0.710	0.68
95_K	99_V	0.708	0.67
135_A	183_P	0.708	0.67
153_K	157_M	0.706	0.67
137_F	185_V	0.706	0.67
300_E	311_L	0.705	0.67
203_R	262_P	0.703	0.67
41_L	45_G	0.703	0.67
48_I	51_H	0.698	0.66
40_Q	46_Y	0.698	0.66
108_I	117_I	0.697	0.66
63_K	66_L	0.697	0.66
301_S	308_F	0.696	0.66
139_A	193_V	0.696	0.66
246_T	254_P	0.692	0.66
106_R	182_V	0.692	0.66
305_I	309_E	0.692	0.66
100_F	160_C	0.692	0.66
207_L	221_K	0.692	0.66
269_R	273_E	0.690	0.65
142_W	198_E	0.688	0.65
38_K	44_P	0.685	0.65
265_I	268_Y	0.683	0.65
84_Y	88_A	0.682	0.65
332_F	336_Y	0.682	0.65
348_G	351_P	0.678	0.64
148_L	181_L	0.677	0.64
86_D	184_L	0.673	0.64
345_L	352_L	0.673	0.64
182_V	332_F	0.670	0.63
28_L	39_H	0.669	0.63
161_C	167_G	0.665	0.63
301_S	341_Y	0.664	0.62
178_S	193_V	0.661	0.62
305_I	312_S	0.661	0.62
172_K	176_S	0.660	0.62
65_F	69_R	0.660	0.62
97_I	104_S	0.660	0.62
369_W	373_F	0.659	0.62
364_T	368_L	0.658	0.62
33_N	39_H	0.657	0.62
29_L	36_A	0.654	0.61
136_S	144_T	0.652	0.61
308_F	366_G	0.652	0.61
117_I	187_P	0.651	0.61
197_S	251_R	0.651	0.61
233_F	267_M	0.648	0.61
114_G	248_P	0.648	0.61
233_F	266_A	0.647	0.60
26_E	31_S	0.646	0.60
50_E	54_K	0.644	0.60
102_F	124_G	0.644	0.60
261_E	297_E	0.643	0.60
134_N	279_L	0.643	0.60
87_S	91_K	0.642	0.60
138_H	230_N	0.642	0.60
253_F	266_A	0.642	0.60
285_Q	350_N	0.641	0.60
288_E	321_D	0.640	0.60
238_E	245_P	0.639	0.60
304_V	367_I	0.638	0.59
245_P	254_P	0.636	0.59
35_S	38_K	0.635	0.59
179_L	372_L	0.632	0.59
151_W	365_S	0.631	0.59
84_Y	146_S	0.631	0.59
26_E	34_R	0.623	0.58
138_H	283_H	0.623	0.58
300_E	371_A	0.620	0.57
48_I	57_Q	0.618	0.57
141_E	230_N	0.618	0.57
169_S	369_W	0.618	0.57
284_T	342_T	0.614	0.57
43_C	48_I	0.613	0.56
360_I	363_A	0.613	0.56
280_L	286_G	0.611	0.56
308_F	311_L	0.611	0.56
58_T	62_I	0.608	0.56
193_V	198_E	0.606	0.56
154_E	365_S	0.606	0.56
142_W	190_V	0.606	0.56
83_I	352_L	0.606	0.56
341_Y	370_R	0.604	0.55
29_L	42_Y	0.603	0.55
198_E	357_F	0.602	0.55
174_F	180_S	0.601	0.55
252_D	321_D	0.601	0.55
138_H	344_E	0.600	0.55
31_S	36_A	0.599	0.55
288_E	317_K	0.599	0.55
290_Y	342_T	0.598	0.55
42_Y	65_F	0.597	0.54
252_D	322_I	0.596	0.54
228_D	283_H	0.596	0.54
69_R	294_K	0.596	0.54
43_C	47_V	0.596	0.54
141_E	344_E	0.595	0.54
132_H	270_L	0.595	0.54
186_N	189_G	0.595	0.54
290_Y	329_R	0.592	0.54
137_F	281_A	0.588	0.53
302_A	318_G	0.587	0.53
114_G	118_W	0.587	0.53
37_Q	46_Y	0.585	0.53
301_S	314_N	0.584	0.53
80_Q	84_Y	0.584	0.53
104_S	126_H	0.583	0.53
130_K	275_P	0.582	0.53
27_E	33_N	0.582	0.53
26_E	32_A	0.582	0.53
137_F	229_L	0.580	0.52
301_S	316_Y	0.580	0.52
138_H	228_D	0.580	0.52
233_F	268_Y	0.579	0.52
61_D	69_R	0.578	0.52
206_E	225_N	0.577	0.52
85_D	195_N	0.576	0.52
61_D	68_P	0.574	0.52
123_G	128_V	0.573	0.51
319_V	322_I	0.572	0.51
289_I	304_V	0.571	0.51
322_I	326_A	0.571	0.51
57_Q	130_K	0.569	0.51
287_E	349_Q	0.568	0.51
158_S	167_G	0.567	0.51
29_L	33_N	0.565	0.50
291_W	318_G	0.564	0.50
102_F	123_G	0.563	0.50
204_R	225_N	0.563	0.50
132_H	279_L	0.562	0.50
284_T	289_I	0.561	0.50
271_I	328_F	0.561	0.50
294_K	322_I	0.559	0.50
190_V	193_V	0.559	0.50
42_Y	46_Y	0.559	0.50
228_D	344_E	0.558	0.50
159_L	167_G	0.553	0.49
198_E	204_R	0.552	0.49
245_P	325_Y	0.550	0.49
33_N	56_L	0.550	0.49
261_E	264_S	0.549	0.48
145_T	194_L	0.547	0.48
282_L	343_V	0.547	0.48
238_E	325_Y	0.546	0.48
36_A	40_Q	0.546	0.48
32_A	37_Q	0.545	0.48
51_H	60_Q	0.545	0.48
297_E	303_A	0.544	0.48
151_W	368_L	0.543	0.48
285_Q	292_G	0.542	0.48
231_K	294_K	0.541	0.48
205_D	227_V	0.541	0.48
143_I	345_L	0.541	0.48
83_I	292_G	0.541	0.48
35_S	45_G	0.541	0.48
35_S	40_Q	0.539	0.47
35_S	50_E	0.539	0.47
87_S	115_R	0.537	0.47
140_N	350_N	0.534	0.47
31_S	39_H	0.533	0.47
359_H	362_N	0.533	0.47
134_N	146_S	0.532	0.46
32_A	44_P	0.531	0.46
41_L	44_P	0.531	0.46
190_V	357_F	0.531	0.46
139_A	145_T	0.531	0.46
33_N	37_Q	0.531	0.46
62_I	69_R	0.530	0.46
243_R	254_P	0.530	0.46
200_M	203_R	0.528	0.46
86_D	89_V	0.527	0.46
287_E	345_L	0.526	0.46
111_S	115_R	0.525	0.46
352_L	361_Y	0.525	0.46
300_E	305_I	0.524	0.45
40_Q	44_P	0.524	0.45
202_A	228_D	0.524	0.45
69_R	351_P	0.524	0.45
147_V	345_L	0.522	0.45
226_G	237_W	0.521	0.45
354_F	357_F	0.521	0.45
237_W	258_P	0.521	0.45
88_A	321_D	0.521	0.45
349_Q	357_F	0.521	0.45
131_V	179_L	0.520	0.45
115_R	204_R	0.519	0.45
93_I	183_P	0.518	0.45
146_S	357_F	0.518	0.45
93_I	118_W	0.517	0.45
39_H	72_K	0.517	0.45
38_K	45_G	0.517	0.45
28_L	41_L	0.516	0.44
140_N	255_G	0.515	0.44
103_V	152_F	0.514	0.44
254_P	325_Y	0.513	0.44
90_E	94_K	0.510	0.44
73_L	77_W	0.510	0.44
32_A	40_Q	0.510	0.44
128_V	144_T	0.509	0.44
234_P	300_E	0.507	0.43
169_S	173_L	0.504	0.43
40_Q	45_G	0.504	0.43
155_Y	181_L	0.504	0.43
283_H	290_Y	0.504	0.43
34_R	54_K	0.503	0.43
307_E	310_E	0.501	0.43
27_E	42_Y	0.501	0.43
124_G	174_F	0.500	0.42
316_Y	364_T	0.500	0.42

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2boaA	1	0.9495	100	0.238	Contact Map
1ayeA	1	0.9495	100	0.239	Contact Map
4p10A	1	0.9495	100	0.241	Contact Map
1pcaA	1	0.9495	100	0.242	Contact Map
1kwmA	1	0.9495	100	0.247	Contact Map
1jqgA	1	0.9388	100	0.262	Contact Map
2bo9A	2	0.7553	100	0.363	Contact Map
1dtdA	1	0.7473	100	0.363	Contact Map
1z5rA	1	0.7473	100	0.367	Contact Map
1m4lA	1	0.7606	100	0.368	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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