GREMLIN Database
YQGN - Uncharacterized protein YqgN
UniProt: P54491 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 187 (178)
Sequences: 4693 (3849)
Seq/√Len: 288.5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
131_F166_R2.9401.00
69_Q86_T2.7651.00
9_T125_C2.7521.00
43_T71_C2.6901.00
8_K12_A2.6731.00
157_E180_D2.5711.00
48_I72_I2.5001.00
127_D131_F2.4221.00
43_T69_Q2.1681.00
151_T174_H2.1451.00
94_E104_V2.1231.00
46_V60_I2.0591.00
62_Q66_E2.0341.00
33_F62_Q2.0121.00
49_S56_T2.0021.00
82_M143_Y1.9921.00
28_M54_I1.9511.00
45_A84_F1.9481.00
32_L120_I1.9031.00
17_S20_D1.8921.00
25_T156_L1.8911.00
76_H83_Q1.8861.00
153_S173_V1.8461.00
63_A70_V1.8251.00
45_A119_M1.8211.00
123_G126_F1.7611.00
41_A68_K1.7591.00
56_T154_L1.7181.00
38_W63_A1.7151.00
128_V181_R1.7131.00
96_V102_E1.7091.00
157_E181_R1.6701.00
128_V160_L1.6571.00
95_T101_L1.6541.00
21_I52_L1.6501.00
21_I25_T1.6211.00
31_Y181_R1.6181.00
20_D24_K1.5661.00
71_C116_I1.5661.00
10_L135_F1.5541.00
38_W66_E1.5071.00
72_I87_Y1.5011.00
10_L124_V1.5011.00
14_S52_L1.4401.00
74_K85_R1.4321.00
128_V162_A1.3911.00
157_E179_E1.3791.00
144_L151_T1.3751.00
118_L152_V1.3461.00
131_F172_P1.3421.00
155_L159_Q1.3311.00
121_V151_T1.3221.00
24_K179_E1.3181.00
13_L135_F1.3131.00
9_T161_F1.2841.00
96_V100_L1.2711.00
38_W68_K1.2631.00
62_Q65_E1.2591.00
49_S57_R1.2511.00
177_I182_I1.2511.00
126_F153_S1.2481.00
21_I156_L1.2431.00
60_I70_V1.2381.00
127_D164_V1.2341.00
35_L175_K1.2301.00
152_V175_K1.2201.00
43_T116_I1.2141.00
29_Y33_F1.2081.00
11_E15_A1.1871.00
175_K182_I1.1711.00
45_A143_Y1.1581.00
37_E175_K1.1561.00
95_T99_G1.1351.00
119_M144_L1.1341.00
25_T55_P1.1251.00
57_R101_L1.1171.00
49_S55_P1.1161.00
29_Y59_V1.1131.00
2_K167_L1.1081.00
124_V135_F1.1081.00
4_Q8_K1.0951.00
28_M154_L1.0791.00
84_F143_Y1.0761.00
123_G160_L1.0671.00
113_P146_E1.0651.00
24_K156_L1.0531.00
38_W118_L1.0471.00
71_C111_V1.0361.00
121_V144_L1.0331.00
46_V120_I1.0321.00
157_E160_L1.0241.00
75_C139_Y1.0181.00
52_L135_F1.0151.00
35_L152_V1.0131.00
32_L59_V1.0101.00
125_C133_V1.0021.00
35_L177_I1.0001.00
42_G117_D0.9781.00
123_G173_V0.9751.00
88_Q91_D0.9701.00
38_W41_A0.9651.00
5_L9_T0.9611.00
10_L51_G0.9551.00
48_I57_R0.9541.00
50_R135_F0.9481.00
129_N163_H0.9461.00
151_T171_I0.9381.00
27_R31_Y0.9371.00
74_K102_E0.9111.00
161_F164_V0.9021.00
42_G68_K0.9021.00
160_L183_I0.9021.00
133_V165_P0.9001.00
50_R100_L0.8971.00
123_G155_L0.8961.00
32_L177_I0.8911.00
8_K11_E0.8761.00
12_A15_A0.8751.00
151_T173_V0.8741.00
29_Y62_Q0.8711.00
48_I93_L0.8651.00
55_P58_P0.8641.00
84_F116_I0.8621.00
129_N166_R0.8591.00
78_D137_G0.8591.00
41_A44_I0.8561.00
84_F119_M0.8551.00
26_E58_P0.8501.00
71_C84_F0.8501.00
81_K146_E0.8471.00
38_W62_Q0.8361.00
25_T29_Y0.8351.00
22_L26_E0.8301.00
5_L125_C0.8301.00
89_T92_Q0.8251.00
126_F155_L0.8191.00
43_T117_D0.8161.00
87_Y93_L0.8151.00
26_E30_K0.8101.00
104_V107_K0.8010.99
36_P40_N0.7970.99
16_L158_C0.7950.99
121_V173_V0.7950.99
7_K11_E0.7920.99
125_C161_F0.7900.99
71_C86_T0.7830.99
24_K27_R0.7810.99
92_Q104_V0.7810.99
10_L14_S0.7710.99
158_C179_E0.7690.99
127_D163_H0.7660.99
144_L171_I0.7650.99
59_V154_L0.7640.99
23_Q27_R0.7610.99
35_L182_I0.7590.99
64_W70_V0.7580.99
3_S7_K0.7570.99
36_P68_K0.7560.99
119_M143_Y0.7470.99
54_I159_Q0.7450.99
14_S51_G0.7450.99
87_Y90_D0.7440.99
76_H81_K0.7410.99
80_K142_R0.7380.99
20_D23_Q0.7340.99
61_E65_E0.7340.99
131_F164_V0.7320.99
19_E23_Q0.7310.99
45_A116_I0.7280.99
44_I63_A0.7270.99
77_P80_K0.7270.99
56_T60_I0.7250.99
33_F59_V0.7250.99
36_P39_Q0.7180.99
126_F159_Q0.7170.99
46_V59_V0.7150.99
64_W90_D0.7140.99
64_W87_Y0.7090.99
16_L21_I0.7060.99
46_V56_T0.7030.99
57_R61_E0.6930.98
12_A158_C0.6930.98
32_L154_L0.6920.98
16_L24_K0.6910.98
116_I119_M0.6830.98
60_I72_I0.6830.98
133_V164_V0.6740.98
156_L159_Q0.6730.98
44_I118_L0.6720.98
75_C96_V0.6710.98
145_S171_I0.6710.98
45_A71_C0.6700.98
85_R105_I0.6640.98
59_V63_A0.6630.98
61_E64_W0.6610.98
27_R30_K0.6560.98
44_I68_K0.6540.98
80_K137_G0.6480.98
33_F66_E0.6480.98
58_P61_E0.6470.98
5_L133_V0.6430.97
120_I154_L0.6430.97
123_G153_S0.6380.97
82_M139_Y0.6310.97
28_M120_I0.6310.97
77_P139_Y0.6290.97
176_L183_I0.6290.97
77_P81_K0.6260.97
29_Y56_T0.6150.97
25_T54_I0.6120.97
155_L158_C0.6120.97
9_T12_A0.6120.97
47_T56_T0.6020.96
46_V72_I0.6000.96
123_G176_L0.5970.96
63_A66_E0.5960.96
85_R106_E0.5940.96
155_L176_L0.5920.96
88_Q92_Q0.5890.96
9_T124_V0.5880.96
22_L55_P0.5880.96
13_L52_L0.5870.96
24_K54_I0.5850.96
42_G69_Q0.5840.96
31_Y34_S0.5840.96
2_K6_R0.5830.96
87_Y92_Q0.5800.95
46_V70_V0.5730.95
48_I101_L0.5690.95
31_Y177_I0.5690.95
128_V183_I0.5670.95
31_Y182_I0.5620.95
127_D161_F0.5570.94
130_G173_V0.5550.94
35_L38_W0.5490.94
123_G159_Q0.5470.94
74_K103_P0.5470.94
81_K143_Y0.5460.94
51_G135_F0.5460.94
147_Y151_T0.5460.94
11_E14_S0.5410.93
152_V177_I0.5410.93
20_D158_C0.5400.93
126_F176_L0.5380.93
63_A68_K0.5380.93
5_L164_V0.5330.93
93_L101_L0.5320.93
64_W89_T0.5310.93
30_K62_Q0.5300.93
5_L8_K0.5280.93
166_R172_P0.5280.93
24_K157_E0.5260.92
24_K158_C0.5240.92
30_K34_S0.5210.92
47_T54_I0.5200.92
50_R75_C0.5180.92
155_L173_V0.5170.92
39_Q68_K0.5150.92
75_C80_K0.5140.92
41_A117_D0.5140.92
36_P41_A0.5130.92
7_K10_L0.5110.91
123_G127_D0.5110.91
97_Y100_L0.5010.91
39_Q42_G0.5010.91
129_N172_P0.5000.90
18_N22_L0.5000.90
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1ydmA 3 0.9786 100 0.065 Contact Map
2jcbA 1 0.9947 100 0.066 Contact Map
1souA 1 0.9733 100 0.091 Contact Map
3hy3A 2 0.9465 100 0.113 Contact Map
1wkcA 1 0.8877 100 0.143 Contact Map
1sbqA 1 0.8503 100 0.213 Contact Map
2gdtA 1 0.4439 12.5 0.952 Contact Map
1vb5A 3 0.8984 11.3 0.953 Contact Map
3rrlA 2 0.861 10.4 0.954 Contact Map
3dzyA 1 0.3422 9.7 0.954 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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