YQGN - BACSU - GREMLIN Contacts

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YQGN - Uncharacterized protein YqgN

UniProt:	P54491	Sequences: MKSQLRKKTLEALSALSNEDILQKTERMYKYLFSLPEWQNAGTIAVTISRGLEIPTRPVIEQAWEEGKQVCIPKCHPDTKKMQFRTYQTDDQLETVYAGLLEPVIEKTKEVNPSQIDLMIVPGVCFDVNGFRVGFGGGYYDRYLSEYEGKTVSLLLECQLFAHVPRLPHDIPVHKLITEDRIISCFS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	187 (178)
Sequences:	4693 (3849)
Seq/√Len:	288.5

ECOLI - 5FCL
BACSU - YQGN

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
131_F	166_R	2.940	1.00
69_Q	86_T	2.765	1.00
9_T	125_C	2.752	1.00
43_T	71_C	2.690	1.00
8_K	12_A	2.673	1.00
157_E	180_D	2.571	1.00
48_I	72_I	2.500	1.00
127_D	131_F	2.422	1.00
43_T	69_Q	2.168	1.00
151_T	174_H	2.145	1.00
94_E	104_V	2.123	1.00
46_V	60_I	2.059	1.00
62_Q	66_E	2.034	1.00
33_F	62_Q	2.012	1.00
49_S	56_T	2.002	1.00
82_M	143_Y	1.992	1.00
28_M	54_I	1.951	1.00
45_A	84_F	1.948	1.00
32_L	120_I	1.903	1.00
17_S	20_D	1.892	1.00
25_T	156_L	1.891	1.00
76_H	83_Q	1.886	1.00
153_S	173_V	1.846	1.00
63_A	70_V	1.825	1.00
45_A	119_M	1.821	1.00
123_G	126_F	1.761	1.00
41_A	68_K	1.759	1.00
56_T	154_L	1.718	1.00
38_W	63_A	1.715	1.00
128_V	181_R	1.713	1.00
96_V	102_E	1.709	1.00
157_E	181_R	1.670	1.00
128_V	160_L	1.657	1.00
95_T	101_L	1.654	1.00
21_I	52_L	1.650	1.00
21_I	25_T	1.621	1.00
31_Y	181_R	1.618	1.00
20_D	24_K	1.566	1.00
71_C	116_I	1.566	1.00
10_L	135_F	1.554	1.00
38_W	66_E	1.507	1.00
72_I	87_Y	1.501	1.00
10_L	124_V	1.501	1.00
14_S	52_L	1.440	1.00
74_K	85_R	1.432	1.00
128_V	162_A	1.391	1.00
157_E	179_E	1.379	1.00
144_L	151_T	1.375	1.00
118_L	152_V	1.346	1.00
131_F	172_P	1.342	1.00
155_L	159_Q	1.331	1.00
121_V	151_T	1.322	1.00
24_K	179_E	1.318	1.00
13_L	135_F	1.313	1.00
9_T	161_F	1.284	1.00
96_V	100_L	1.271	1.00
38_W	68_K	1.263	1.00
62_Q	65_E	1.259	1.00
49_S	57_R	1.251	1.00
177_I	182_I	1.251	1.00
126_F	153_S	1.248	1.00
21_I	156_L	1.243	1.00
60_I	70_V	1.238	1.00
127_D	164_V	1.234	1.00
35_L	175_K	1.230	1.00
152_V	175_K	1.220	1.00
43_T	116_I	1.214	1.00
29_Y	33_F	1.208	1.00
11_E	15_A	1.187	1.00
175_K	182_I	1.171	1.00
45_A	143_Y	1.158	1.00
37_E	175_K	1.156	1.00
95_T	99_G	1.135	1.00
119_M	144_L	1.134	1.00
25_T	55_P	1.125	1.00
57_R	101_L	1.117	1.00
49_S	55_P	1.116	1.00
29_Y	59_V	1.113	1.00
2_K	167_L	1.108	1.00
124_V	135_F	1.108	1.00
4_Q	8_K	1.095	1.00
28_M	154_L	1.079	1.00
84_F	143_Y	1.076	1.00
123_G	160_L	1.067	1.00
113_P	146_E	1.065	1.00
24_K	156_L	1.053	1.00
38_W	118_L	1.047	1.00
71_C	111_V	1.036	1.00
121_V	144_L	1.033	1.00
46_V	120_I	1.032	1.00
157_E	160_L	1.024	1.00
75_C	139_Y	1.018	1.00
52_L	135_F	1.015	1.00
35_L	152_V	1.013	1.00
32_L	59_V	1.010	1.00
125_C	133_V	1.002	1.00
35_L	177_I	1.000	1.00
42_G	117_D	0.978	1.00
123_G	173_V	0.975	1.00
88_Q	91_D	0.970	1.00
38_W	41_A	0.965	1.00
5_L	9_T	0.961	1.00
10_L	51_G	0.955	1.00
48_I	57_R	0.954	1.00
50_R	135_F	0.948	1.00
129_N	163_H	0.946	1.00
151_T	171_I	0.938	1.00
27_R	31_Y	0.937	1.00
74_K	102_E	0.911	1.00
161_F	164_V	0.902	1.00
42_G	68_K	0.902	1.00
160_L	183_I	0.902	1.00
133_V	165_P	0.900	1.00
50_R	100_L	0.897	1.00
123_G	155_L	0.896	1.00
32_L	177_I	0.891	1.00
8_K	11_E	0.876	1.00
12_A	15_A	0.875	1.00
151_T	173_V	0.874	1.00
29_Y	62_Q	0.871	1.00
48_I	93_L	0.865	1.00
55_P	58_P	0.864	1.00
84_F	116_I	0.862	1.00
129_N	166_R	0.859	1.00
78_D	137_G	0.859	1.00
41_A	44_I	0.856	1.00
84_F	119_M	0.855	1.00
26_E	58_P	0.850	1.00
71_C	84_F	0.850	1.00
81_K	146_E	0.847	1.00
38_W	62_Q	0.836	1.00
25_T	29_Y	0.835	1.00
22_L	26_E	0.830	1.00
5_L	125_C	0.830	1.00
89_T	92_Q	0.825	1.00
126_F	155_L	0.819	1.00
43_T	117_D	0.816	1.00
87_Y	93_L	0.815	1.00
26_E	30_K	0.810	1.00
104_V	107_K	0.801	0.99
36_P	40_N	0.797	0.99
16_L	158_C	0.795	0.99
121_V	173_V	0.795	0.99
7_K	11_E	0.792	0.99
125_C	161_F	0.790	0.99
71_C	86_T	0.783	0.99
24_K	27_R	0.781	0.99
92_Q	104_V	0.781	0.99
10_L	14_S	0.771	0.99
158_C	179_E	0.769	0.99
127_D	163_H	0.766	0.99
144_L	171_I	0.765	0.99
59_V	154_L	0.764	0.99
23_Q	27_R	0.761	0.99
35_L	182_I	0.759	0.99
64_W	70_V	0.758	0.99
3_S	7_K	0.757	0.99
36_P	68_K	0.756	0.99
119_M	143_Y	0.747	0.99
54_I	159_Q	0.745	0.99
14_S	51_G	0.745	0.99
87_Y	90_D	0.744	0.99
76_H	81_K	0.741	0.99
80_K	142_R	0.738	0.99
20_D	23_Q	0.734	0.99
61_E	65_E	0.734	0.99
131_F	164_V	0.732	0.99
19_E	23_Q	0.731	0.99
45_A	116_I	0.728	0.99
44_I	63_A	0.727	0.99
77_P	80_K	0.727	0.99
56_T	60_I	0.725	0.99
33_F	59_V	0.725	0.99
36_P	39_Q	0.718	0.99
126_F	159_Q	0.717	0.99
46_V	59_V	0.715	0.99
64_W	90_D	0.714	0.99
64_W	87_Y	0.709	0.99
16_L	21_I	0.706	0.99
46_V	56_T	0.703	0.99
57_R	61_E	0.693	0.98
12_A	158_C	0.693	0.98
32_L	154_L	0.692	0.98
16_L	24_K	0.691	0.98
116_I	119_M	0.683	0.98
60_I	72_I	0.683	0.98
133_V	164_V	0.674	0.98
156_L	159_Q	0.673	0.98
44_I	118_L	0.672	0.98
75_C	96_V	0.671	0.98
145_S	171_I	0.671	0.98
45_A	71_C	0.670	0.98
85_R	105_I	0.664	0.98
59_V	63_A	0.663	0.98
61_E	64_W	0.661	0.98
27_R	30_K	0.656	0.98
44_I	68_K	0.654	0.98
80_K	137_G	0.648	0.98
33_F	66_E	0.648	0.98
58_P	61_E	0.647	0.98
5_L	133_V	0.643	0.97
120_I	154_L	0.643	0.97
123_G	153_S	0.638	0.97
82_M	139_Y	0.631	0.97
28_M	120_I	0.631	0.97
77_P	139_Y	0.629	0.97
176_L	183_I	0.629	0.97
77_P	81_K	0.626	0.97
29_Y	56_T	0.615	0.97
25_T	54_I	0.612	0.97
155_L	158_C	0.612	0.97
9_T	12_A	0.612	0.97
47_T	56_T	0.602	0.96
46_V	72_I	0.600	0.96
123_G	176_L	0.597	0.96
63_A	66_E	0.596	0.96
85_R	106_E	0.594	0.96
155_L	176_L	0.592	0.96
88_Q	92_Q	0.589	0.96
9_T	124_V	0.588	0.96
22_L	55_P	0.588	0.96
13_L	52_L	0.587	0.96
24_K	54_I	0.585	0.96
42_G	69_Q	0.584	0.96
31_Y	34_S	0.584	0.96
2_K	6_R	0.583	0.96
87_Y	92_Q	0.580	0.95
46_V	70_V	0.573	0.95
48_I	101_L	0.569	0.95
31_Y	177_I	0.569	0.95
128_V	183_I	0.567	0.95
31_Y	182_I	0.562	0.95
127_D	161_F	0.557	0.94
130_G	173_V	0.555	0.94
35_L	38_W	0.549	0.94
123_G	159_Q	0.547	0.94
74_K	103_P	0.547	0.94
81_K	143_Y	0.546	0.94
51_G	135_F	0.546	0.94
147_Y	151_T	0.546	0.94
11_E	14_S	0.541	0.93
152_V	177_I	0.541	0.93
20_D	158_C	0.540	0.93
126_F	176_L	0.538	0.93
63_A	68_K	0.538	0.93
5_L	164_V	0.533	0.93
93_L	101_L	0.532	0.93
64_W	89_T	0.531	0.93
30_K	62_Q	0.530	0.93
5_L	8_K	0.528	0.93
166_R	172_P	0.528	0.93
24_K	157_E	0.526	0.92
24_K	158_C	0.524	0.92
30_K	34_S	0.521	0.92
47_T	54_I	0.520	0.92
50_R	75_C	0.518	0.92
155_L	173_V	0.517	0.92
39_Q	68_K	0.515	0.92
75_C	80_K	0.514	0.92
41_A	117_D	0.514	0.92
36_P	41_A	0.513	0.92
7_K	10_L	0.511	0.91
123_G	127_D	0.511	0.91
97_Y	100_L	0.501	0.91
39_Q	42_G	0.501	0.91
129_N	172_P	0.500	0.90
18_N	22_L	0.500	0.90

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1ydmA	3	0.9786	100	0.065	Contact Map
2jcbA	1	0.9947	100	0.066	Contact Map
1souA	1	0.9733	100	0.091	Contact Map
3hy3A	2	0.9465	100	0.113	Contact Map
1wkcA	1	0.8877	100	0.143	Contact Map
1sbqA	1	0.8503	100	0.213	Contact Map
2gdtA	1	0.4439	12.5	0.952	Contact Map
1vb5A	3	0.8984	11.3	0.953	Contact Map
3rrlA	2	0.861	10.4	0.954	Contact Map
3dzyA	1	0.3422	9.7	0.954	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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