GREMLIN Database
YQGC - Uncharacterized protein YqgC
UniProt: P54486 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 160 (152)
Sequences: 758 (568)
Seq/√Len: 46.1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
112_V130_G5.3841.00
49_Y53_L3.7761.00
66_D144_K3.2371.00
86_G114_A3.1091.00
60_A64_A2.5221.00
127_F131_L2.5051.00
112_V123_L2.4931.00
85_W89_I2.4921.00
86_G110_G2.4681.00
50_M53_L2.4201.00
80_S83_A2.3821.00
129_I133_S2.3681.00
74_V79_G2.1181.00
55_E151_M2.0701.00
108_F155_F2.0661.00
53_L57_V2.0540.99
110_G114_A1.9210.99
106_G110_G1.8940.99
132_G136_G1.8870.99
77_F132_G1.8440.99
15_I18_I1.8210.99
14_I18_I1.7940.99
122_D125_S1.7860.99
86_G111_A1.7850.99
77_F131_L1.7760.98
51_F154_Y1.7640.98
8_L105_L1.7600.98
20_L145_G1.6180.97
96_F99_P1.6160.97
51_F55_E1.6050.97
43_S46_P1.5900.97
121_K125_S1.5520.96
13_F152_I1.5390.96
91_L133_S1.5250.96
133_S137_F1.4360.94
93_I113_C1.4310.94
82_A85_W1.4220.94
21_V157_W1.4170.94
111_A114_A1.3980.94
73_G111_A1.3550.93
129_I141_V1.3320.92
141_V145_G1.3250.92
105_L109_I1.3110.91
35_F155_F1.2810.90
73_G136_G1.2570.89
94_G99_P1.2280.88
36_V56_A1.2180.88
53_L56_A1.2090.87
33_A37_L1.1980.87
4_L8_L1.1930.87
90_G110_G1.1930.87
129_I136_G1.1790.86
16_A19_G1.1690.86
79_G132_G1.1610.85
16_A31_I1.1440.84
103_I149_L1.1430.84
3_M92_L1.1420.84
109_I113_C1.1140.83
79_G137_F1.1120.83
111_A130_G1.1070.82
88_T91_L1.0980.82
105_L129_I1.0880.81
129_I132_G1.0830.81
18_I24_V1.0700.80
21_V145_G1.0660.80
16_A148_Q1.0640.80
50_M64_A1.0590.79
32_V36_V1.0490.79
81_K85_W1.0440.78
81_K113_C1.0200.77
112_V116_L1.0160.76
31_I152_I0.9960.75
101_A105_L0.9900.75
5_Y41_L0.9830.74
54_V93_I0.9810.74
19_G27_S0.9780.74
3_M142_I0.9720.73
9_I38_Y0.9710.73
80_S155_F0.9710.73
140_G144_K0.9690.73
17_F149_L0.9640.73
86_G136_G0.9620.72
16_A27_S0.9600.72
9_I12_V0.9560.72
142_I146_I0.9470.71
18_I22_Y0.9310.70
15_I30_F0.9200.69
3_M7_L0.9120.68
5_Y37_L0.9020.67
116_L129_I0.8960.67
8_L36_V0.8860.66
96_F107_P0.8840.66
28_V62_L0.8830.66
13_F154_Y0.8780.65
94_G106_G0.8770.65
4_L12_V0.8700.65
82_A86_G0.8670.64
112_V127_F0.8590.64
62_L104_I0.8540.63
16_A25_I0.8490.63
73_G86_G0.8490.63
86_G90_G0.8450.62
6_W38_Y0.8350.61
11_A116_L0.8310.61
20_L28_V0.8270.61
56_A145_G0.8250.60
42_F76_R0.8200.60
71_L84_I0.8150.60
47_Y51_F0.8020.58
11_A124_K0.7970.58
107_P126_A0.7880.57
80_S129_I0.7870.57
104_I138_L0.7840.57
15_I117_I0.7770.56
62_L148_Q0.7710.55
13_F155_F0.7660.55
28_V148_Q0.7600.54
73_G114_A0.7570.54
140_G143_A0.7550.54
8_L97_V0.7540.54
31_I156_L0.7540.54
39_G43_S0.7490.53
13_F31_I0.7400.52
122_D146_I0.7370.52
79_G133_S0.7370.52
32_V101_A0.7350.52
25_I67_Y0.7340.52
83_A140_G0.7320.51
59_A151_M0.7280.51
12_V88_T0.7270.51
124_K127_F0.7250.51
92_L121_K0.7150.50
64_A68_V0.7110.49
31_I148_Q0.7070.49
83_A133_S0.7050.49
9_I34_G0.7050.49
31_I35_F0.7020.49
70_N74_V0.7010.48
90_G132_G0.6980.48
37_L144_K0.6970.48
107_P132_G0.6960.48
87_S111_A0.6930.48
126_A148_Q0.6900.47
113_C117_I0.6850.47
42_F52_W0.6830.47
24_V97_V0.6830.47
76_R150_L0.6800.46
60_A89_I0.6790.46
6_W20_L0.6790.46
14_I29_V0.6790.46
82_A129_I0.6770.46
21_V76_R0.6670.45
96_F157_W0.6670.45
57_V135_I0.6610.45
42_F46_P0.6580.44
36_V121_K0.6540.44
11_A15_I0.6510.44
149_L153_G0.6510.44
122_D156_L0.6470.43
129_I142_I0.6430.43
21_V117_I0.6430.43
133_S146_I0.6380.42
17_F20_L0.6360.42
15_I58_F0.6360.42
68_V93_I0.6350.42
10_A67_Y0.6340.42
4_L7_L0.6320.42
86_G132_G0.6280.41
51_F155_F0.6230.41
142_I156_L0.6220.41
50_M57_V0.6210.41
12_V33_A0.6150.40
72_L149_L0.6150.40
23_P26_P0.6140.40
52_W148_Q0.6140.40
35_F59_A0.6120.40
29_V140_G0.6120.40
28_V133_S0.6110.40
3_M57_V0.6040.39
73_G110_G0.5990.39
89_I117_I0.5990.39
35_F108_F0.5980.39
13_F38_Y0.5960.38
134_L153_G0.5920.38
82_A117_I0.5900.38
54_V154_Y0.5870.37
48_S56_A0.5860.37
14_I146_I0.5850.37
64_A93_I0.5820.37
59_A62_L0.5790.37
28_V149_L0.5760.36
123_L127_F0.5730.36
22_Y95_P0.5720.36
82_A111_A0.5720.36
57_V146_I0.5720.36
45_S60_A0.5680.36
27_S110_G0.5670.36
73_G132_G0.5590.35
53_L117_I0.5580.35
38_Y151_M0.5570.35
77_F129_I0.5560.35
54_V121_K0.5550.35
108_F130_G0.5530.34
125_S129_I0.5410.33
65_A71_L0.5380.33
77_F83_A0.5370.33
28_V59_A0.5320.33
14_I149_L0.5310.32
55_E59_A0.5310.32
87_S100_V0.5280.32
61_V143_A0.5270.32
8_L60_A0.5240.32
22_Y91_L0.5240.32
14_I64_A0.5230.32
113_C123_L0.5190.31
83_A86_G0.5180.31
34_G152_I0.5180.31
57_V89_I0.5180.31
124_K153_G0.5140.31
76_R108_F0.5100.31
40_F60_A0.5080.31
30_F68_V0.5070.30
25_I109_I0.5070.30
113_C125_S0.5050.30
4_L123_L0.5040.30
70_N79_G0.5040.30
13_F148_Q0.5040.30
32_V104_I0.5000.30
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2jlnA 1 0.95 10.1 0.942 Contact Map
2nwlA 3 0.5125 9.8 0.942 Contact Map
4z7fA 2 0.7375 4.8 0.95 Contact Map
3rlbA 1 0.8 4.1 0.952 Contact Map
4mt1A 3 0.725 3.3 0.954 Contact Map
2jwaA 2 0.2562 3.3 0.954 Contact Map
3p5nA 2 0.6625 3.3 0.954 Contact Map
2zy9A 2 0.35 2.4 0.957 Contact Map
4dveA 3 0.7875 2.3 0.957 Contact Map
3rceA 1 0.875 2.2 0.958 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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