YQGB - BACSU - GREMLIN Contacts

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YQGB - Uncharacterized protein YqgB

UniProt:	P54485	Sequences: MNVFQLFIKSTYSPRDIAKTRFQGIGKAILYVFLLSVLFAIPTAYYVSTGTVKSMNGFKTVLNKDFPDFTISNGKLQTDEKKATESQANGFVIVFDPTDSYGTEQIEAKQNAIGILQNKFVLAIDGQAQEMSYSMMPSELQKKDVIAGLNQNKAMIVTVLSALIFLVTAAGKFIEVSFLALIGLIIKNSQKKHLSYHQLWKLSAYSITLSTVFFTIMRALEATVPSEFLLNWFVNFVILFLVLKEIPSKKVINKS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	255 (247)
Sequences:	274 (240)
Seq/√Len:	15.3

BACSU - YQGB

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
31_Y	208_T	8.105	1.00
68_D	142_K	3.599	0.99
66_F	203_S	3.568	0.99
32_V	204_A	3.248	0.99
38_L	179_L	2.923	0.98
177_S	200_W	2.895	0.97
202_L	242_V	2.844	0.97
78_T	97_P	2.373	0.92
10_S	31_Y	2.269	0.90
6_L	23_Q	2.224	0.89
74_G	99_D	2.223	0.89
6_L	20_T	2.210	0.89
9_K	13_S	2.132	0.87
17_I	114_G	2.122	0.87
180_A	199_L	2.098	0.86
28_A	205_Y	2.085	0.86
32_V	187_K	2.073	0.86
17_I	97_P	2.020	0.84
116_L	133_Y	1.993	0.83
10_S	242_V	1.937	0.81
97_P	133_Y	1.901	0.80
65_D	213_F	1.843	0.78
44_A	108_A	1.839	0.78
9_K	20_T	1.814	0.77
115_I	133_Y	1.788	0.76
36_S	94_V	1.766	0.75
69_F	76_L	1.758	0.74
22_F	141_Q	1.758	0.74
16_D	133_Y	1.744	0.74
15_R	205_Y	1.741	0.74
193_H	242_V	1.715	0.73
6_L	205_Y	1.700	0.72
6_L	28_A	1.672	0.71
113_I	180_A	1.669	0.70
37_V	70_T	1.615	0.68
91_F	202_L	1.562	0.65
213_F	217_M	1.533	0.64
93_I	141_Q	1.529	0.63
94_V	101_Y	1.528	0.63
25_I	200_W	1.520	0.63
136_M	166_L	1.511	0.62
26_G	240_F	1.500	0.62
24_G	33_F	1.496	0.62
28_A	201_K	1.487	0.61
96_D	206_S	1.476	0.61
56_N	108_A	1.473	0.60
163_L	186_I	1.471	0.60
20_T	205_Y	1.468	0.60
73_N	134_S	1.441	0.59
48_S	170_A	1.419	0.57
238_I	242_V	1.409	0.57
69_F	209_L	1.404	0.57
79_D	152_N	1.396	0.56
21_R	133_Y	1.391	0.56
41_I	149_L	1.377	0.55
148_G	193_H	1.376	0.55
33_F	174_I	1.349	0.54
179_L	235_N	1.345	0.53
183_G	230_L	1.342	0.53
74_G	83_A	1.325	0.52
41_I	147_A	1.325	0.52
37_V	113_I	1.319	0.52
135_M	170_A	1.312	0.51
209_L	241_L	1.311	0.51
93_I	112_A	1.308	0.51
102_G	106_I	1.305	0.51
206_S	216_I	1.305	0.51
86_S	95_F	1.290	0.50
190_Q	202_L	1.287	0.50
69_F	116_L	1.277	0.49
26_G	33_F	1.266	0.49
7_F	56_N	1.263	0.49
51_T	140_L	1.237	0.47
119_K	207_I	1.222	0.46
194_L	246_I	1.198	0.45
142_K	146_I	1.192	0.45
42_P	71_I	1.192	0.45
173_F	214_F	1.191	0.45
19_K	226_S	1.188	0.44
160_L	164_I	1.185	0.44
27_K	205_Y	1.180	0.44
194_L	197_H	1.170	0.43
194_L	243_L	1.166	0.43
27_K	76_L	1.164	0.43
43_T	106_I	1.162	0.43
79_D	171_G	1.161	0.43
176_V	200_W	1.156	0.43
64_K	84_T	1.155	0.43
36_S	202_L	1.152	0.42
170_A	240_F	1.140	0.42
134_S	148_G	1.135	0.41
24_G	94_V	1.131	0.41
7_F	145_V	1.129	0.41
56_N	140_L	1.125	0.41
109_K	201_K	1.123	0.41
128_A	137_P	1.122	0.41
3_V	6_L	1.120	0.41
78_T	236_F	1.114	0.40
176_V	207_I	1.112	0.40
56_N	106_I	1.109	0.40
109_K	227_E	1.106	0.40
76_L	142_K	1.097	0.39
71_I	97_P	1.096	0.39
187_K	194_L	1.094	0.39
152_N	182_I	1.090	0.39
36_S	206_S	1.087	0.39
93_I	237_V	1.084	0.39
48_S	236_F	1.081	0.39
51_T	154_A	1.075	0.38
103_T	216_I	1.074	0.38
117_Q	203_S	1.071	0.38
38_L	206_S	1.071	0.38
40_A	161_S	1.063	0.38
169_A	242_V	1.058	0.37
186_I	191_K	1.058	0.37
78_T	95_F	1.036	0.36
136_M	199_L	1.032	0.36
138_S	156_I	1.029	0.36
75_K	117_Q	1.029	0.36
38_L	51_T	1.026	0.36
73_N	104_E	1.026	0.36
116_L	247_P	1.017	0.35
17_I	200_W	1.003	0.34
23_Q	28_A	1.002	0.34
107_E	121_V	0.996	0.34
87_Q	162_A	0.995	0.34
197_H	204_A	0.994	0.34
57_G	73_N	0.992	0.34
106_I	182_I	0.991	0.34
14_P	35_L	0.989	0.34
217_M	230_L	0.987	0.34
120_F	186_I	0.985	0.34
23_Q	27_K	0.980	0.33
196_Y	239_L	0.977	0.33
38_L	212_V	0.975	0.33
114_G	191_K	0.974	0.33
100_S	212_V	0.973	0.33
71_I	114_G	0.969	0.33
94_V	109_K	0.968	0.33
41_I	87_Q	0.965	0.33
20_T	24_G	0.952	0.32
104_E	243_L	0.952	0.32
113_I	155_M	0.951	0.32
116_L	211_T	0.947	0.32
45_Y	144_D	0.947	0.32
81_K	99_D	0.946	0.32
114_G	169_A	0.945	0.32
79_D	140_L	0.941	0.31
102_G	125_D	0.940	0.31
120_F	232_W	0.940	0.31
133_Y	232_W	0.930	0.31
71_I	78_T	0.927	0.31
6_L	238_I	0.927	0.31
35_L	211_T	0.926	0.31
70_T	81_K	0.923	0.30
143_K	181_L	0.922	0.30
45_Y	149_L	0.921	0.30
113_I	216_I	0.921	0.30
75_K	145_V	0.919	0.30
143_K	147_A	0.911	0.30
98_T	182_I	0.910	0.30
118_N	138_S	0.907	0.30
85_E	109_K	0.907	0.30
30_L	33_F	0.901	0.29
197_H	201_K	0.896	0.29
38_L	248_S	0.893	0.29
102_G	120_F	0.892	0.29
97_P	169_A	0.892	0.29
87_Q	163_L	0.891	0.29
46_Y	211_T	0.882	0.29
6_L	24_G	0.871	0.28
179_L	187_K	0.869	0.28
93_I	248_S	0.869	0.28
131_M	170_A	0.867	0.28
5_Q	11_T	0.866	0.28
33_F	145_V	0.862	0.28
119_K	202_L	0.862	0.28
100_S	181_L	0.857	0.27
45_Y	83_A	0.856	0.27
176_V	204_A	0.856	0.27
34_L	233_F	0.852	0.27
113_I	243_L	0.851	0.27
58_F	196_Y	0.849	0.27
94_V	235_N	0.849	0.27
84_T	160_L	0.847	0.27
207_I	211_T	0.847	0.27
98_T	178_F	0.845	0.27
147_A	237_V	0.839	0.27
217_M	245_E	0.836	0.26
72_S	223_T	0.832	0.26
43_T	187_K	0.832	0.26
147_A	196_Y	0.830	0.26
30_L	37_V	0.828	0.26
50_G	95_F	0.826	0.26
192_K	247_P	0.826	0.26
200_W	204_A	0.825	0.26
77_Q	95_F	0.825	0.26
11_T	24_G	0.819	0.26
26_G	31_Y	0.819	0.26
3_V	27_K	0.819	0.26
223_T	242_V	0.816	0.26
217_M	222_A	0.812	0.25
90_G	243_L	0.810	0.25
186_I	224_V	0.808	0.25
30_L	195_S	0.808	0.25
135_M	169_A	0.807	0.25
213_F	234_V	0.802	0.25
183_G	236_F	0.800	0.25
43_T	161_S	0.797	0.25
24_G	162_A	0.795	0.25
14_P	24_G	0.793	0.25
80_E	95_F	0.791	0.25
4_F	170_A	0.790	0.24
69_F	165_F	0.789	0.24
164_I	196_Y	0.788	0.24
89_N	143_K	0.788	0.24
130_E	181_L	0.786	0.24
181_L	185_I	0.784	0.24
24_G	174_I	0.782	0.24
56_N	196_Y	0.780	0.24
72_S	160_L	0.780	0.24
84_T	88_A	0.777	0.24
53_K	72_S	0.776	0.24
37_V	55_M	0.775	0.24
36_S	118_N	0.775	0.24
17_I	238_I	0.771	0.24
169_A	238_I	0.771	0.24
70_T	77_Q	0.766	0.23
66_F	194_L	0.761	0.23
38_L	120_F	0.760	0.23
16_D	83_A	0.757	0.23
12_Y	225_P	0.755	0.23
99_D	116_L	0.755	0.23
170_A	184_L	0.750	0.23
11_T	38_L	0.749	0.23
134_S	178_F	0.747	0.23
84_T	98_T	0.743	0.23
167_V	207_I	0.740	0.22
79_D	187_K	0.738	0.22
93_I	136_M	0.737	0.22
175_E	201_K	0.736	0.22
5_Q	112_A	0.736	0.22
103_T	178_F	0.734	0.22
3_V	241_L	0.730	0.22
108_A	119_K	0.730	0.22
17_I	21_R	0.729	0.22
30_L	216_I	0.723	0.22
119_K	211_T	0.722	0.22
72_S	212_V	0.722	0.22
160_L	243_L	0.721	0.22
154_A	173_F	0.721	0.22
203_S	206_S	0.720	0.22
147_A	174_I	0.718	0.22
213_F	224_V	0.717	0.22
95_F	146_I	0.717	0.22
109_K	112_A	0.714	0.21
123_A	235_N	0.711	0.21
87_Q	149_L	0.711	0.21
24_G	36_S	0.706	0.21
82_K	219_A	0.696	0.21
54_S	73_N	0.694	0.21
59_K	166_L	0.693	0.21
207_I	235_N	0.691	0.21
8_I	210_S	0.689	0.21
99_D	159_V	0.687	0.20
106_I	112_A	0.687	0.20
137_P	225_P	0.683	0.20
60_T	149_L	0.681	0.20
55_M	143_K	0.680	0.20
28_A	213_F	0.678	0.20
102_G	127_Q	0.677	0.20
201_K	222_A	0.672	0.20
176_V	211_T	0.670	0.20
182_I	235_N	0.669	0.20
38_L	143_K	0.668	0.20
36_S	203_S	0.666	0.20
222_A	226_S	0.662	0.20
120_F	206_S	0.662	0.20
95_F	247_P	0.661	0.19
32_V	219_A	0.652	0.19
39_F	145_V	0.652	0.19
207_I	226_S	0.651	0.19
23_Q	205_Y	0.651	0.19
13_S	16_D	0.646	0.19
34_L	187_K	0.642	0.19
24_G	209_L	0.641	0.19
83_A	98_T	0.641	0.19
38_L	53_K	0.639	0.19
12_Y	74_G	0.637	0.19
70_T	86_S	0.635	0.19
24_G	241_L	0.632	0.18
87_Q	90_G	0.631	0.18
112_A	213_F	0.630	0.18
19_K	215_T	0.630	0.18
73_N	193_H	0.626	0.18
151_Q	234_V	0.623	0.18
118_N	166_L	0.622	0.18
177_S	204_A	0.622	0.18
61_V	195_S	0.619	0.18
231_N	235_N	0.619	0.18
72_S	150_N	0.617	0.18
91_F	140_L	0.615	0.18
38_L	54_S	0.615	0.18
155_M	185_I	0.614	0.18
207_I	219_A	0.612	0.18
143_K	229_L	0.604	0.18
37_V	242_V	0.602	0.17
115_I	119_K	0.602	0.17
117_Q	202_L	0.602	0.17
122_L	149_L	0.601	0.17
93_I	116_L	0.599	0.17
110_Q	145_V	0.598	0.17
34_L	160_L	0.593	0.17
59_K	110_Q	0.589	0.17
133_Y	183_G	0.588	0.17
78_T	227_E	0.588	0.17
181_L	227_E	0.586	0.17
174_I	247_P	0.586	0.17
106_I	157_V	0.582	0.17
145_V	244_K	0.578	0.17
180_A	219_A	0.575	0.17
7_F	65_D	0.574	0.17
51_T	236_F	0.570	0.16
172_K	211_T	0.569	0.16
13_S	191_K	0.564	0.16
79_D	118_N	0.563	0.16
88_A	162_A	0.563	0.16
28_A	38_L	0.562	0.16
93_I	111_N	0.560	0.16
21_R	27_K	0.557	0.16
73_N	141_Q	0.557	0.16
32_V	175_E	0.555	0.16
68_D	141_Q	0.554	0.16
183_G	243_L	0.553	0.16
41_I	123_A	0.553	0.16
185_I	201_K	0.551	0.16
38_L	107_E	0.549	0.16
177_S	187_K	0.548	0.16
36_S	170_A	0.547	0.16
104_E	115_I	0.544	0.16
126_G	164_I	0.543	0.16
66_F	183_G	0.542	0.16
74_G	118_N	0.542	0.16
158_T	173_F	0.541	0.16
53_K	57_G	0.541	0.16
184_L	194_L	0.541	0.16
110_Q	216_I	0.540	0.16
141_Q	215_T	0.534	0.15
38_L	66_F	0.530	0.15
64_K	102_G	0.529	0.15
120_F	229_L	0.529	0.15
163_L	223_T	0.523	0.15
180_A	212_V	0.523	0.15
75_K	212_V	0.520	0.15
28_A	69_F	0.520	0.15
115_I	158_T	0.518	0.15
115_I	160_L	0.518	0.15
182_I	202_L	0.515	0.15
17_I	20_T	0.512	0.15
84_T	205_Y	0.511	0.15
122_L	193_H	0.510	0.15
31_Y	173_F	0.509	0.15
42_P	247_P	0.508	0.15
63_N	93_I	0.508	0.15
153_K	212_V	0.508	0.15
55_M	190_Q	0.507	0.15
3_V	103_T	0.505	0.15
162_A	234_V	0.504	0.14
153_K	171_G	0.500	0.14
241_L	245_E	0.500	0.14

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2wnrA	1	0.5725	3.6	0.963	Contact Map
3wdoA	1	0.4431	3.3	0.964	Contact Map
3tx3A	2	0.2745	2.8	0.965	Contact Map
2rddB	1	0.1255	2.4	0.966	Contact Map
3hzqA	3	0.3647	2.2	0.967	Contact Map
2m8rA	1	0.1882	2.1	0.967	Contact Map
4kzyC	1	0.1765	1.9	0.968	Contact Map
2je6A	3	0.5725	1.8	0.968	Contact Map
4ymuD	2	0.4314	1.8	0.968	Contact Map
4gycB	2	0.1882	1.7	0.969	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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