GREMLIN Database
YQFZ - Uncharacterized protein YqfZ
UniProt: P54483 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 99 (76)
Sequences: 548 (521)
Seq/√Len: 59.7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
75_F93_Y3.3541.00
50_V61_I3.2331.00
50_V56_D3.1981.00
52_V93_Y2.9901.00
50_V65_A2.9181.00
58_V94_K2.5391.00
71_I74_D2.5181.00
58_V84_A2.2391.00
84_A94_K2.1521.00
42_V49_T1.9021.00
51_K92_A1.6560.99
59_M63_G1.6540.99
58_V76_E1.6290.99
46_A94_K1.5700.99
56_D61_I1.5040.98
57_T60_S1.4660.98
72_V76_E1.4560.98
52_V61_I1.4040.97
76_E81_N1.3750.97
46_A58_V1.2270.94
57_T62_V1.2250.94
67_S78_L1.2200.94
36_A92_A1.2010.93
78_L95_F1.1950.93
61_I87_I1.1930.93
32_P35_E1.1610.92
39_K42_V1.1570.92
62_V72_V1.1410.91
74_D77_A1.1210.90
76_E85_N1.1200.90
62_V67_S1.1010.89
50_V53_K1.0930.89
56_D60_S1.0890.89
52_V55_G1.0890.89
82_V85_N1.0890.89
67_S75_F1.0490.87
20_D26_I1.0470.87
74_D78_L1.0420.87
51_K91_T1.0140.85
73_K77_A1.0100.85
88_Q91_T0.9910.84
67_S74_D0.9830.83
58_V72_V0.9450.81
65_A95_F0.9410.80
53_K56_D0.9250.79
17_L27_P0.9170.79
34_Y42_V0.9140.79
34_Y49_T0.8960.77
20_D32_P0.8750.75
41_A49_T0.8500.73
35_E39_K0.8430.73
81_N84_A0.8300.71
34_Y44_E0.8190.70
81_N85_N0.7990.69
39_K93_Y0.7880.68
26_I29_Q0.7820.67
63_G73_K0.7750.66
46_A95_F0.7620.65
59_M89_A0.7600.65
62_V65_A0.7540.64
83_K86_A0.7520.64
80_P93_Y0.7490.64
18_F27_P0.7490.64
19_Y22_K0.7460.63
32_P44_E0.7240.61
52_V56_D0.7220.61
27_P33_V0.7160.60
49_T92_A0.6990.58
46_A84_A0.6820.56
22_K40_T0.6790.56
20_D45_P0.6710.55
59_M62_V0.6700.55
25_T37_S0.6700.55
57_T79_N0.6620.54
19_Y23_I0.6500.53
50_V93_Y0.6490.53
54_P89_A0.6470.52
49_T78_L0.6460.52
41_A47_Y0.6440.52
51_K90_G0.6360.51
50_V64_S0.6280.50
42_V47_Y0.6210.50
49_T75_F0.6030.48
67_S71_I0.5930.46
80_P94_K0.5920.46
21_L27_P0.5900.46
50_V57_T0.5840.45
52_V64_S0.5810.45
81_N87_I0.5800.45
67_S95_F0.5770.45
18_F26_I0.5760.45
67_S93_Y0.5760.45
59_M91_T0.5720.44
28_I33_V0.5720.44
55_G64_S0.5580.43
24_G73_K0.5540.42
90_G93_Y0.5510.42
18_F28_I0.5480.41
46_A49_T0.5440.41
81_N86_A0.5350.40
72_V75_F0.5340.40
50_V75_F0.5300.40
33_V72_V0.5260.39
40_T44_E0.5250.39
56_D64_S0.5200.38
18_F25_T0.5180.38
21_L85_N0.5110.38
47_Y76_E0.5110.38
21_L26_I0.5100.37
18_F66_G0.5100.37
18_F22_K0.5100.37
53_K64_S0.5080.37
76_E80_P0.5010.36
26_I33_V0.5000.36
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4b8vA 2 0.5556 99.5 0.401 Contact Map
4pxvA 1 0.4848 99.2 0.483 Contact Map
2mkxA 1 0.5152 99.1 0.504 Contact Map
2djpA 1 0.6465 99.1 0.505 Contact Map
4xcmA 2 0.4848 99.1 0.506 Contact Map
4ebyA 1 0.5556 99 0.517 Contact Map
2l9yA 1 0.8788 99 0.522 Contact Map
4a1kA 2 0.5051 98.9 0.544 Contact Map
2mpwA 1 0.7374 98.9 0.547 Contact Map
1e0gA 1 0.4848 98.9 0.55 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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