GREMLIN Database
YQEI - Probable RNA-binding protein YqeI
UniProt: P54454 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 96 (91)
Sequences: 937 (353)
Seq/√Len: 37.0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
37_A85_K6.0131.00
86_E91_K3.9461.00
9_F13_K3.4701.00
20_I39_A3.0621.00
23_V61_V2.8501.00
23_V28_V2.6221.00
65_L83_L2.1220.99
30_D68_G1.9160.98
86_E89_E1.8510.98
54_C61_V1.7440.96
21_F35_Q1.6920.96
27_G56_E1.6130.95
63_E67_K1.5800.94
33_I65_L1.4950.92
31_N35_Q1.4780.91
14_A82_V1.4320.90
59_N63_E1.3670.88
12_S16_H1.3480.87
36_I83_L1.3270.86
62_A76_T1.3010.85
29_N73_L1.2870.85
41_E85_K1.2400.82
66_V73_L1.2360.82
87_S91_K1.2310.82
33_I70_R1.2260.82
34_K38_E1.2190.81
40_L46_I1.2030.80
40_L89_E1.1970.80
24_G47_K1.1910.80
76_T81_I1.1880.79
2_L72_Q1.1460.77
14_A17_L1.1450.77
25_K45_L1.1040.74
65_L81_I1.1030.74
4_G8_R1.1030.74
64_A68_G1.0960.74
66_V71_S1.0800.72
32_M48_V1.0580.71
23_V68_G1.0510.70
49_S92_Q1.0490.70
7_K15_H1.0040.67
49_S80_T0.9890.66
40_L71_S0.9670.64
71_S89_E0.9670.64
45_L83_L0.9540.63
35_Q40_L0.9430.62
50_V61_V0.9370.61
74_V82_V0.9340.61
7_K80_T0.9260.60
62_A73_L0.9260.60
11_R75_Q0.9240.60
60_D63_E0.9140.59
39_A43_R0.9060.59
47_K78_G0.9060.59
53_N74_V0.8990.58
36_I65_L0.8920.58
5_K12_S0.8880.57
20_I43_R0.8840.57
69_S85_K0.8790.56
15_H80_T0.8770.56
4_G16_H0.8740.56
86_E92_Q0.8640.55
69_S73_L0.8530.54
70_R92_Q0.8390.53
54_C81_I0.8350.53
17_L36_I0.8340.53
58_K76_T0.8250.52
2_L15_H0.8230.52
63_E70_R0.8210.51
53_N77_I0.8140.51
44_E82_V0.8080.50
6_Q87_S0.7810.48
50_V54_C0.7800.48
59_N76_T0.7660.47
47_K77_I0.7590.46
73_L76_T0.7460.45
72_Q75_Q0.7460.45
70_R86_E0.7460.45
36_I42_A0.7390.44
22_Q49_S0.7360.44
33_I69_S0.7340.44
40_L43_R0.7280.43
44_E78_G0.7260.43
41_E87_S0.7250.43
8_R15_H0.7230.43
38_E45_L0.7200.43
58_K79_N0.7170.42
5_K65_L0.7110.42
37_A88_K0.7040.41
27_G61_V0.6950.40
88_K92_Q0.6680.38
37_A70_R0.6660.38
64_A70_R0.6650.38
11_R82_V0.6580.37
7_K11_R0.6490.37
39_A42_A0.6480.36
59_N79_N0.6430.36
54_C68_G0.6420.36
79_N90_N0.6290.35
40_L66_V0.6250.35
87_S90_N0.6240.35
19_P42_A0.6210.34
2_L16_H0.6180.34
86_E90_N0.6150.34
6_Q22_Q0.6130.34
20_I49_S0.6120.34
44_E51_L0.6100.33
44_E84_Y0.6090.33
68_G71_S0.6080.33
38_E83_L0.6050.33
24_G48_V0.6030.33
67_K70_R0.6010.33
72_Q82_V0.6010.33
16_H42_A0.5980.32
21_F42_A0.5920.32
13_K16_H0.5910.32
22_Q51_L0.5890.32
26_G32_M0.5830.31
9_F12_S0.5810.31
12_S15_H0.5680.30
43_R78_G0.5560.29
43_R47_K0.5540.29
26_G49_S0.5500.29
7_K75_Q0.5390.28
8_R80_T0.5300.27
56_E60_D0.5300.27
29_N32_M0.5250.27
64_A88_K0.5250.27
24_G83_L0.5240.27
66_V70_R0.5220.27
23_V32_M0.5160.26
48_V81_I0.5140.26
8_R52_Q0.5070.26
27_G35_Q0.5020.26
27_G44_E0.5020.26
9_F51_L0.5000.25
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1rq8A 1 1 100 0.157 Contact Map
1jo0A 1 0.9896 100 0.174 Contact Map
3quaA 2 0.6979 27 0.908 Contact Map
3sbxA 2 0.6875 26.8 0.908 Contact Map
2agkA 1 0.9271 24.6 0.91 Contact Map
3ka5A 2 0.5521 19.3 0.914 Contact Map
3lyvA 2 0.5625 16.4 0.917 Contact Map
3k2tA 1 0.5208 13 0.921 Contact Map
1wekA 5 0.7083 11.8 0.922 Contact Map
4c26A 1 0.4792 11.6 0.922 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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