YQEB - BACSU - GREMLIN Contacts

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YQEB - Uncharacterized protein YqeB

UniProt:	P54447	Sequences: MLQNQSHTLIGVTKTAVFFLYAALAIIGFAIGYFIPQIAKWALSLPWIPLEGPLRLITSFQGSTASFITALLGMCAGIWFAHSVIAMLLSVKITDHTVEFIKGKKVQTIHSDDIALVFMDHKRLVLLGTAGYELVREEIDEKPVNVEKAFRQHHYEWATDGDPFKDQFRRWIPDAPDLSQGAHALLKARHKALQDEEKDDIEEFRLELAQLGIVVRDEGTRQYWRKAETYPPKIQLGEGL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	240 (219)
Sequences:	150 (127)
Seq/√Len:	8.6

BACSU - YQEB

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
98_V	150_F	5.310	1.00
8_T	153_H	3.500	0.95
213_I	226_K	3.384	0.94
95_D	153_H	3.018	0.90
79_W	83_S	2.684	0.83
97_T	108_T	2.402	0.75
38_I	69_T	2.382	0.74
182_A	208_L	2.345	0.73
54_L	82_H	2.258	0.70
89_L	100_F	2.247	0.70
91_V	146_V	2.241	0.70
10_I	140_D	2.176	0.67
100_F	124_L	2.149	0.66
27_I	173_P	2.144	0.66
12_V	168_F	2.118	0.65
39_A	57_I	2.061	0.63
199_D	209_A	2.060	0.63
21_Y	25_A	2.044	0.62
112_D	168_F	1.929	0.58
196_E	220_T	1.925	0.57
83_S	87_M	1.889	0.56
42_A	54_L	1.829	0.53
131_G	168_F	1.825	0.53
200_D	205_R	1.807	0.52
178_L	224_W	1.801	0.52
49_P	188_A	1.756	0.50
173_P	187_K	1.738	0.49
30_A	106_V	1.730	0.49
19_F	23_A	1.702	0.48
128_G	132_Y	1.697	0.48
128_G	133_E	1.666	0.46
39_A	49_P	1.663	0.46
170_R	200_D	1.661	0.46
10_I	131_G	1.655	0.46
47_W	184_A	1.645	0.46
92_K	216_R	1.639	0.45
51_E	128_G	1.593	0.43
31_I	76_A	1.566	0.42
118_F	150_F	1.557	0.42
38_I	104_K	1.537	0.41
47_W	59_S	1.529	0.41
72_L	201_I	1.527	0.41
186_L	197_E	1.526	0.41
16_A	168_F	1.520	0.40
101_I	194_Q	1.504	0.40
20_L	148_K	1.484	0.39
8_T	95_D	1.472	0.38
174_D	187_K	1.471	0.38
98_V	126_L	1.465	0.38
174_D	183_H	1.463	0.38
68_I	147_E	1.439	0.37
72_L	81_A	1.432	0.37
76_A	174_D	1.426	0.37
60_F	109_I	1.404	0.36
55_R	206_L	1.403	0.36
40_K	58_T	1.392	0.35
43_L	51_E	1.389	0.35
115_A	142_K	1.377	0.35
62_G	68_I	1.376	0.35
48_I	51_E	1.371	0.34
84_V	87_M	1.367	0.34
146_V	156_E	1.363	0.34
30_A	191_K	1.354	0.34
50_L	115_A	1.351	0.34
20_L	36_P	1.349	0.34
156_E	173_P	1.333	0.33
10_I	146_V	1.328	0.33
25_A	42_A	1.323	0.33
53_P	172_I	1.320	0.33
30_A	102_K	1.314	0.32
116_L	158_A	1.301	0.32
186_L	213_I	1.297	0.32
172_I	207_E	1.275	0.31
44_S	202_E	1.275	0.31
82_H	168_F	1.273	0.31
190_H	210_Q	1.254	0.30
209_A	214_V	1.239	0.30
133_E	185_L	1.234	0.29
179_S	188_A	1.224	0.29
25_A	138_E	1.207	0.28
185_L	226_K	1.200	0.28
41_W	150_F	1.190	0.28
45_L	56_L	1.188	0.28
15_T	114_I	1.187	0.28
80_F	89_L	1.184	0.28
35_I	38_I	1.181	0.28
27_I	116_L	1.179	0.28
93_I	203_E	1.174	0.27
49_P	221_R	1.172	0.27
75_C	96_H	1.169	0.27
111_S	124_L	1.154	0.27
47_W	223_Y	1.153	0.27
50_L	70_A	1.153	0.27
126_L	178_L	1.151	0.27
126_L	138_E	1.110	0.25
51_E	114_I	1.096	0.25
137_E	223_Y	1.085	0.24
73_G	77_G	1.082	0.24
114_I	130_A	1.079	0.24
17_V	196_E	1.071	0.24
80_F	195_D	1.071	0.24
65_A	199_D	1.065	0.24
111_S	126_L	1.064	0.24
57_I	173_P	1.060	0.24
64_T	123_R	1.059	0.24
83_S	117_V	1.048	0.23
27_I	156_E	1.045	0.23
173_P	188_A	1.038	0.23
118_F	157_W	1.038	0.23
55_R	177_D	1.034	0.23
34_F	38_I	1.034	0.23
64_T	190_H	1.031	0.23
150_F	157_W	1.027	0.23
25_A	35_I	1.024	0.23
126_L	195_D	1.022	0.23
114_I	124_L	1.010	0.22
78_I	99_E	1.004	0.22
18_F	177_D	0.995	0.22
114_I	166_D	0.995	0.22
9_L	22_A	0.988	0.22
29_F	147_E	0.986	0.21
148_K	151_R	0.982	0.21
197_E	200_D	0.977	0.21
93_I	178_L	0.974	0.21
115_A	203_E	0.970	0.21
217_D	222_Q	0.959	0.21
36_P	61_Q	0.946	0.20
177_D	181_G	0.945	0.20
27_I	35_I	0.940	0.20
58_T	165_K	0.940	0.20
93_I	183_H	0.924	0.20
139_I	147_E	0.924	0.20
170_R	174_D	0.922	0.20
111_S	156_E	0.917	0.20
11_G	102_K	0.917	0.20
165_K	218_E	0.910	0.19
104_K	170_R	0.906	0.19
49_P	179_S	0.905	0.19
111_S	154_H	0.900	0.19
22_A	27_I	0.897	0.19
30_A	199_D	0.893	0.19
154_H	213_I	0.891	0.19
53_P	98_V	0.886	0.19
98_V	164_F	0.878	0.19
45_L	49_P	0.878	0.19
23_A	92_K	0.878	0.19
35_I	50_L	0.876	0.18
16_A	24_L	0.872	0.18
112_D	132_Y	0.860	0.18
72_L	168_F	0.857	0.18
83_S	114_I	0.856	0.18
56_L	150_F	0.854	0.18
103_G	110_H	0.851	0.18
58_T	178_L	0.847	0.18
80_F	84_V	0.839	0.18
147_E	154_H	0.837	0.18
54_L	177_D	0.836	0.17
71_L	126_L	0.836	0.17
204_F	214_V	0.835	0.17
31_I	94_T	0.830	0.17
58_T	155_Y	0.829	0.17
35_I	43_L	0.829	0.17
58_T	218_E	0.825	0.17
99_E	133_E	0.824	0.17
125_V	136_R	0.822	0.17
84_V	176_P	0.820	0.17
52_G	207_E	0.820	0.17
170_R	203_E	0.819	0.17
200_D	204_F	0.816	0.17
52_G	172_I	0.811	0.17
20_L	81_A	0.809	0.17
128_G	182_A	0.808	0.17
99_E	203_E	0.807	0.17
72_L	135_V	0.801	0.17
70_A	186_L	0.797	0.17
150_F	200_D	0.795	0.17
133_E	205_R	0.789	0.16
89_L	223_Y	0.788	0.16
95_D	109_I	0.784	0.16
18_F	35_I	0.783	0.16
168_F	227_A	0.783	0.16
36_P	60_F	0.780	0.16
155_Y	214_V	0.776	0.16
13_T	36_P	0.776	0.16
145_N	172_I	0.767	0.16
38_I	168_F	0.765	0.16
89_L	115_A	0.764	0.16
32_G	36_P	0.762	0.16
26_I	30_A	0.762	0.16
91_V	142_K	0.761	0.16
20_L	107_Q	0.760	0.16
119_M	211_L	0.759	0.16
68_I	125_V	0.756	0.16
196_E	201_I	0.752	0.16
104_K	217_D	0.749	0.15
31_I	180_Q	0.747	0.15
201_I	213_I	0.742	0.15
134_L	172_I	0.742	0.15
180_Q	186_L	0.740	0.15
164_F	197_E	0.738	0.15
170_R	205_R	0.737	0.15
71_L	180_Q	0.727	0.15
166_D	206_L	0.724	0.15
119_M	204_F	0.723	0.15
31_I	65_A	0.717	0.15
146_V	185_L	0.714	0.15
141_E	164_F	0.713	0.15
43_L	48_I	0.705	0.15
82_H	106_V	0.705	0.15
179_S	213_I	0.704	0.14
12_V	141_E	0.698	0.14
70_A	79_W	0.695	0.14
107_Q	128_G	0.694	0.14
121_H	154_H	0.691	0.14
83_S	113_D	0.689	0.14
218_E	221_R	0.688	0.14
45_L	51_E	0.688	0.14
46_P	75_C	0.686	0.14
40_K	180_Q	0.681	0.14
33_Y	67_F	0.673	0.14
67_F	128_G	0.673	0.14
164_F	210_Q	0.672	0.14
186_L	190_H	0.670	0.14
75_C	182_A	0.669	0.14
119_M	145_N	0.669	0.14
205_R	224_W	0.667	0.14
64_T	83_S	0.667	0.14
65_A	211_L	0.666	0.14
78_I	82_H	0.662	0.14
151_R	203_E	0.662	0.14
44_S	64_T	0.662	0.14
84_V	89_L	0.661	0.14
57_I	144_V	0.659	0.14
89_L	142_K	0.659	0.14
44_S	96_H	0.657	0.14
53_P	155_Y	0.657	0.14
52_G	73_G	0.654	0.13
56_L	146_V	0.652	0.13
50_L	54_L	0.650	0.13
120_D	136_R	0.648	0.13
57_I	61_Q	0.648	0.13
203_E	223_Y	0.647	0.13
87_M	204_F	0.642	0.13
76_A	80_F	0.642	0.13
70_A	100_F	0.641	0.13
28_G	77_G	0.641	0.13
78_I	88_L	0.640	0.13
28_G	41_W	0.636	0.13
46_P	146_V	0.635	0.13
29_F	42_A	0.635	0.13
189_R	225_R	0.635	0.13
34_F	57_I	0.635	0.13
186_L	217_D	0.633	0.13
70_A	196_E	0.631	0.13
24_L	217_D	0.629	0.13
22_A	187_K	0.627	0.13
125_V	153_H	0.625	0.13
38_I	42_A	0.625	0.13
68_I	145_N	0.625	0.13
111_S	216_R	0.624	0.13
60_F	143_P	0.623	0.13
75_C	144_V	0.619	0.13
136_R	174_D	0.615	0.13
13_T	102_K	0.612	0.13
170_R	204_F	0.610	0.13
178_L	182_A	0.609	0.13
100_F	216_R	0.608	0.13
18_F	103_G	0.607	0.13
25_A	43_L	0.606	0.13
11_G	156_E	0.605	0.13
34_F	164_F	0.601	0.12
18_F	221_R	0.598	0.12
120_D	125_V	0.596	0.12
146_V	164_F	0.594	0.12
133_E	137_E	0.594	0.12
37_Q	57_I	0.592	0.12
33_Y	37_Q	0.589	0.12
47_W	195_D	0.585	0.12
53_P	150_F	0.581	0.12
100_F	126_L	0.577	0.12
39_A	188_A	0.577	0.12
111_S	178_L	0.576	0.12
11_G	103_G	0.573	0.12
132_Y	143_P	0.573	0.12
59_S	184_A	0.571	0.12
165_K	174_D	0.570	0.12
99_E	167_Q	0.568	0.12
60_F	106_V	0.568	0.12
77_G	149_A	0.568	0.12
170_R	194_Q	0.568	0.12
65_A	149_A	0.567	0.12
31_I	44_S	0.563	0.12
25_A	177_D	0.561	0.12
27_I	166_D	0.559	0.12
130_A	143_P	0.554	0.12
59_S	67_F	0.553	0.12
32_G	119_M	0.552	0.12
136_R	170_R	0.551	0.12
15_T	26_I	0.550	0.12
35_I	199_D	0.542	0.11
76_A	91_V	0.541	0.11
147_E	164_F	0.539	0.11
47_W	122_K	0.537	0.11
66_S	207_E	0.535	0.11
79_W	85_I	0.534	0.11
111_S	140_D	0.531	0.11
172_I	176_P	0.531	0.11
113_D	129_T	0.529	0.11
115_A	156_E	0.526	0.11
40_K	55_R	0.525	0.11
22_A	71_L	0.523	0.11
86_A	103_G	0.520	0.11
184_A	223_Y	0.519	0.11
96_H	148_K	0.519	0.11
84_V	88_L	0.518	0.11
37_Q	146_V	0.518	0.11
62_G	224_W	0.518	0.11
80_F	110_H	0.515	0.11
120_D	217_D	0.515	0.11
58_T	96_H	0.514	0.11
131_G	167_Q	0.511	0.11
91_V	196_E	0.507	0.11
42_A	156_E	0.507	0.11
127_L	195_D	0.506	0.11
101_I	119_M	0.506	0.11
60_F	102_K	0.504	0.11
133_E	167_Q	0.503	0.11
36_P	85_I	0.500	0.11

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3tqoA	1	0.4792	77.8	0.951	Contact Map
3sp1A	1	0.825	76.4	0.952	Contact Map
1li5A	1	0.55	56.1	0.958	Contact Map
3j00Z	1	0.3958	13.6	0.97	Contact Map
2konA	1	0.2583	10.6	0.971	Contact Map
2m67A	1	0.3292	8.4	0.972	Contact Map
1d6tA	1	0.4583	8.3	0.972	Contact Map
1ldfA	3	0.35	6.7	0.974	Contact Map
1k0iA	2	0.5833	5	0.975	Contact Map
1keaA	2	0.375	4.8	0.975	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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