XKDP - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

XKDP - Phage-like element PBSX protein XkdP

UniProt:	P54335	Sequences: MTKSVYEFWISQGKDKLRLPVLPDQLSISNTVQNETVKVAKFGDLTFIDEQGAKEISFSSFFPKKYSPIAEYQNFPSPENAITKIEKWMKAKKPVQFLITGTKVNLTCSIEGFSYSEGQQDIGDRSFDIQLKEYKTASPRKIKQKKKTKAKRPSKAAPKTYTVKKGDTLWDIAGRFYGNSTQWRKIWNANKTAMIKRSKRNIRQPGHWIFPGQKLKIPQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	219 (196)
Sequences:	278 (243)
Seq/√Len:	17.4

BACSU - XKDP YQBP

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
182_Q	185_K	8.167	1.00
170_W	180_S	4.020	1.00
187_W	192_T	3.646	1.00
163_V	172_I	3.643	1.00
59_S	128_D	3.525	1.00
177_Y	189_A	3.501	1.00
187_W	194_M	3.477	1.00
161_Y	176_F	3.392	1.00
168_T	171_D	3.342	0.99
54_K	133_E	2.850	0.98
187_W	191_K	2.743	0.98
204_Q	207_H	2.465	0.95
189_A	217_I	2.349	0.94
96_Q	107_T	2.321	0.94
60_S	127_F	2.321	0.94
118_G	126_S	2.272	0.93
82_I	113_F	2.233	0.92
48_I	109_S	2.200	0.92
163_V	213_Q	2.088	0.89
204_Q	208_W	1.952	0.86
179_N	182_Q	1.951	0.86
98_L	105_N	1.899	0.84
107_T	136_T	1.860	0.83
177_Y	185_K	1.824	0.82
162_T	214_K	1.789	0.81
161_Y	167_D	1.779	0.80
210_F	213_Q	1.678	0.76
46_T	111_E	1.659	0.75
56_I	106_L	1.649	0.75
185_K	189_A	1.641	0.74
191_K	194_M	1.622	0.73
176_F	217_I	1.620	0.73
209_I	213_Q	1.587	0.72
44_D	52_G	1.574	0.71
205_P	213_Q	1.558	0.70
76_P	81_A	1.553	0.70
82_I	115_Y	1.529	0.69
187_W	193_A	1.505	0.68
62_F	78_P	1.464	0.65
82_I	127_F	1.455	0.65
177_Y	182_Q	1.417	0.63
97_F	131_L	1.405	0.62
34_N	109_S	1.404	0.62
205_P	208_W	1.390	0.61
27_S	114_S	1.376	0.60
11_S	14_K	1.376	0.60
46_T	132_K	1.352	0.59
78_P	123_G	1.344	0.59
33_Q	38_K	1.336	0.58
155_K	164_K	1.325	0.57
57_S	164_K	1.299	0.56
113_F	127_F	1.277	0.55
208_W	211_P	1.274	0.54
177_Y	215_L	1.262	0.54
19_L	127_F	1.255	0.53
191_K	216_K	1.229	0.52
60_S	113_F	1.222	0.51
207_H	211_P	1.220	0.51
26_L	120_Q	1.217	0.51
120_Q	123_G	1.213	0.51
85_I	110_I	1.200	0.50
87_K	165_K	1.199	0.50
12_Q	107_T	1.192	0.49
24_D	120_Q	1.186	0.49
12_Q	136_T	1.179	0.49
189_A	192_T	1.170	0.48
179_N	185_K	1.166	0.48
182_Q	189_A	1.150	0.47
17_L	217_I	1.144	0.47
111_E	132_K	1.136	0.46
67_S	122_I	1.117	0.45
21_V	69_I	1.112	0.45
46_T	109_S	1.104	0.44
160_T	214_K	1.093	0.43
163_V	210_F	1.093	0.43
34_N	46_T	1.093	0.43
36_T	44_D	1.091	0.43
19_L	22_L	1.090	0.43
89_M	113_F	1.084	0.43
173_A	186_I	1.083	0.43
53_A	133_E	1.074	0.42
11_S	136_T	1.074	0.42
34_N	111_E	1.064	0.42
114_S	128_D	1.057	0.41
48_I	88_W	1.052	0.41
32_V	138_S	1.048	0.41
61_F	126_S	1.038	0.40
177_Y	217_I	1.034	0.40
165_K	179_N	1.024	0.39
96_Q	105_N	1.018	0.39
131_L	160_T	1.012	0.39
19_L	95_V	1.009	0.39
56_I	97_F	1.007	0.38
90_K	213_Q	1.002	0.38
171_D	175_R	0.999	0.38
188_N	191_K	0.997	0.38
207_H	213_Q	0.996	0.38
109_S	132_K	0.987	0.37
60_S	129_I	0.983	0.37
192_T	216_K	0.974	0.37
110_I	113_F	0.972	0.36
61_F	69_I	0.943	0.35
176_F	186_I	0.926	0.34
22_L	120_Q	0.925	0.34
15_D	85_I	0.924	0.34
88_W	95_V	0.923	0.34
163_V	209_I	0.918	0.33
88_W	134_Y	0.911	0.33
135_K	181_T	0.911	0.33
88_W	110_I	0.910	0.33
180_S	184_R	0.909	0.33
169_L	172_I	0.905	0.33
94_P	134_Y	0.902	0.33
62_F	81_A	0.892	0.32
31_T	114_S	0.890	0.32
39_V	89_M	0.884	0.32
62_F	110_I	0.874	0.31
18_R	22_L	0.870	0.31
25_Q	116_S	0.869	0.31
31_T	52_G	0.867	0.31
53_A	81_A	0.860	0.30
186_I	215_L	0.858	0.30
65_K	69_I	0.856	0.30
37_V	93_K	0.845	0.30
172_I	211_P	0.844	0.30
147_K	153_P	0.842	0.30
162_T	170_W	0.841	0.29
58_F	98_L	0.829	0.29
167_D	172_I	0.827	0.29
170_W	185_K	0.826	0.29
51_Q	216_K	0.826	0.29
106_L	133_E	0.821	0.28
163_V	169_L	0.814	0.28
75_F	81_A	0.813	0.28
68_P	75_F	0.811	0.28
42_F	88_W	0.809	0.28
85_I	113_F	0.801	0.27
55_E	110_I	0.799	0.27
172_I	209_I	0.799	0.27
112_G	130_Q	0.789	0.27
64_K	78_P	0.786	0.27
21_V	60_S	0.782	0.27
173_A	180_S	0.782	0.27
12_Q	15_D	0.781	0.27
85_I	127_F	0.778	0.26
147_K	165_K	0.777	0.26
79_E	125_R	0.774	0.26
172_I	213_Q	0.767	0.26
146_K	156_A	0.764	0.26
53_A	111_E	0.764	0.26
161_Y	164_K	0.763	0.26
97_F	193_A	0.762	0.26
163_V	167_D	0.760	0.26
17_L	81_A	0.759	0.26
111_E	139_P	0.755	0.25
114_S	157_A	0.754	0.25
19_L	139_P	0.752	0.25
128_D	145_K	0.742	0.25
123_G	217_I	0.738	0.25
116_S	126_S	0.735	0.24
11_S	48_I	0.732	0.24
39_V	118_G	0.731	0.24
110_I	129_I	0.731	0.24
26_L	79_E	0.729	0.24
60_S	85_I	0.727	0.24
168_T	210_F	0.725	0.24
152_R	155_K	0.724	0.24
92_K	148_T	0.724	0.24
68_P	142_I	0.713	0.23
183_W	209_I	0.707	0.23
31_T	151_K	0.697	0.23
70_A	125_R	0.697	0.23
163_V	215_L	0.695	0.23
25_Q	59_S	0.692	0.23
149_K	152_R	0.692	0.23
151_K	164_K	0.690	0.22
170_W	174_G	0.689	0.22
61_F	127_F	0.687	0.22
185_K	217_I	0.686	0.22
77_S	154_S	0.680	0.22
39_V	101_G	0.671	0.22
170_W	178_G	0.670	0.22
24_D	52_G	0.663	0.21
93_K	136_T	0.655	0.21
57_S	112_G	0.652	0.21
209_I	212_G	0.649	0.21
48_I	132_K	0.649	0.21
91_A	162_T	0.647	0.21
173_A	183_W	0.646	0.21
89_M	135_K	0.646	0.21
116_S	120_Q	0.646	0.21
32_V	49_D	0.645	0.21
86_E	115_Y	0.643	0.21
164_K	184_R	0.642	0.21
39_V	42_F	0.641	0.20
124_D	131_L	0.637	0.20
42_F	180_S	0.628	0.20
41_K	89_M	0.627	0.20
72_Y	75_F	0.626	0.20
130_Q	168_T	0.624	0.20
85_I	129_I	0.623	0.20
64_K	76_P	0.623	0.20
98_L	181_T	0.621	0.20
94_P	109_S	0.620	0.20
30_N	47_F	0.613	0.19
30_N	127_F	0.612	0.19
66_Y	75_F	0.609	0.19
207_H	210_F	0.604	0.19
77_S	146_K	0.604	0.19
28_I	155_K	0.602	0.19
28_I	86_E	0.601	0.19
56_I	111_E	0.600	0.19
50_E	189_A	0.599	0.19
117_E	138_S	0.597	0.19
150_A	189_A	0.590	0.19
166_G	172_I	0.588	0.18
109_S	134_Y	0.583	0.18
69_I	120_Q	0.582	0.18
49_D	126_S	0.581	0.18
63_P	124_D	0.580	0.18
67_S	111_E	0.580	0.18
174_G	180_S	0.579	0.18
26_L	125_R	0.579	0.18
187_W	205_P	0.578	0.18
150_A	188_N	0.577	0.18
33_Q	183_W	0.576	0.18
162_T	181_T	0.576	0.18
162_T	184_R	0.575	0.18
165_K	216_K	0.574	0.18
59_S	80_N	0.574	0.18
31_T	55_E	0.572	0.18
194_M	209_I	0.572	0.18
11_S	95_V	0.572	0.18
188_N	192_T	0.571	0.18
30_N	130_Q	0.570	0.18
91_A	145_K	0.569	0.18
72_Y	76_P	0.569	0.18
34_N	48_I	0.568	0.18
49_D	180_S	0.562	0.18
30_N	54_K	0.559	0.17
192_T	210_F	0.559	0.17
176_F	183_W	0.558	0.17
17_L	186_I	0.557	0.17
43_G	88_W	0.554	0.17
67_S	120_Q	0.553	0.17
131_L	138_S	0.553	0.17
50_E	109_S	0.550	0.17
150_A	182_Q	0.550	0.17
81_A	144_Q	0.550	0.17
70_A	137_A	0.547	0.17
97_F	204_Q	0.546	0.17
163_V	187_W	0.545	0.17
23_P	78_P	0.544	0.17
157_A	182_Q	0.543	0.17
44_D	68_P	0.542	0.17
66_Y	129_I	0.542	0.17
28_I	164_K	0.542	0.17
66_Y	69_I	0.538	0.17
173_A	179_N	0.538	0.17
32_V	189_A	0.538	0.17
92_K	164_K	0.537	0.17
173_A	215_L	0.536	0.17
45_L	87_K	0.535	0.17
94_P	159_K	0.534	0.17
62_F	123_G	0.534	0.17
33_Q	52_G	0.533	0.17
152_R	158_P	0.533	0.17
30_N	133_E	0.530	0.16
150_A	184_R	0.529	0.16
59_S	141_K	0.527	0.16
189_A	216_K	0.526	0.16
151_K	191_K	0.524	0.16
41_K	71_E	0.524	0.16
208_W	213_Q	0.522	0.16
191_K	210_F	0.520	0.16
48_I	134_Y	0.519	0.16
17_L	85_I	0.518	0.16
123_G	162_T	0.517	0.16
78_P	97_F	0.512	0.16
151_K	156_A	0.510	0.16
157_A	176_F	0.509	0.16
112_G	143_K	0.506	0.16
30_N	52_G	0.506	0.16
148_T	173_A	0.506	0.16
95_V	153_P	0.505	0.16
163_V	194_M	0.504	0.16
61_F	214_K	0.504	0.16
66_Y	191_K	0.503	0.16
37_V	47_F	0.503	0.16
95_V	110_I	0.503	0.16
96_Q	129_I	0.503	0.16
128_D	175_R	0.500	0.15
58_F	96_Q	0.500	0.15
187_W	211_P	0.500	0.15

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2ltfA	1	0.2329	99.3	0.811	Contact Map
2djpA	1	0.2831	99.2	0.818	Contact Map
2mkxA	1	0.2237	99.1	0.828	Contact Map
4pxvA	1	0.2192	99	0.833	Contact Map
2mpwA	1	0.347	99	0.835	Contact Map
2l9yA	1	0.4977	98.8	0.842	Contact Map
1e0gA	1	0.2146	98.8	0.845	Contact Map
4uz3A	1	0.2146	98.7	0.852	Contact Map
4b8vA	2	0.242	98.5	0.858	Contact Map
4ebyA	1	0.2648	98.5	0.858	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0078 seconds.