XKDK - BACSU - GREMLIN Contacts

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XKDK - Phage-like element PBSX protein XkdK

UniProt:	P54331	Sequences: MNGGTFTTGKEKERAGIYFNFKTTAQERVSLSERGTVALPVASSWGEAKTFVSISSVEDLNKKVGLSIDDPSLLLLREAKKNAKTVLMYRLTEGVRASADIAEGVKATAVYGGTKGNDIIIRINQNVLDANSFDVTTYMDESEVDKQTVKKAEELTANGYVTFTGTGDLSSTIPLTGSEGDTAAETLNASAGIRLSGGTDKAPVNSDYTDFLAAAETESFDVIALPVAEGDQLKATFAAFIKRLRDGQGQKVQGVTANYAGDYEGIINVTEGVLLEDGTEVTPDKATAWVAGASAGATFNQSLTFVEYEGAVDVLHRLDHDTIVERLGKGEFLFTFDARDKSVSVEKDINSLVTFTAEKNKKFAKNKIVRVLDAVNNDLTRELKALIKSRKGSGSDIPASEDGLQYVKTMITQYMTTLQDAGGITGFDSDEDITISMNEDRDGFLIDLAVQPVDAAEKFYFNVEVN	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	466 (416)
Sequences:	1046 (908)
Seq/√Len:	44.5

BACSU - XKDK YQBK

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
375_V	450_V	4.894	1.00
435_I	439_E	4.885	1.00
433_I	436_S	4.880	1.00
433_I	439_E	4.580	1.00
434_T	438_N	3.731	1.00
434_T	439_E	3.715	1.00
407_V	444_F	3.660	1.00
38_A	211_F	3.410	1.00
433_I	438_N	3.266	1.00
238_A	266_I	3.121	1.00
436_S	439_E	3.064	1.00
435_I	438_N	2.954	1.00
237_F	254_G	2.863	1.00
164_T	168_D	2.830	1.00
265_G	373_D	2.758	1.00
40_P	89_Y	2.669	1.00
134_D	148_T	2.559	1.00
165_G	168_D	2.483	1.00
379_L	411_I	2.447	1.00
375_V	418_L	2.411	1.00
289_W	308_Y	2.410	1.00
456_A	459_F	2.363	1.00
400_S	422_G	2.348	1.00
440_D	454_D	2.346	1.00
255_V	287_T	2.320	1.00
241_I	254_G	2.300	1.00
286_A	345_V	2.293	1.00
39_L	86_V	2.248	1.00
374_A	414_Y	2.232	1.00
349_I	457_E	2.212	1.00
292_G	296_G	2.210	1.00
372_L	450_V	2.208	1.00
126_N	134_D	2.156	1.00
240_F	252_V	2.153	1.00
14_R	324_V	2.112	1.00
426_G	451_Q	2.080	0.99
216_E	243_R	2.055	0.99
208_Y	237_F	2.055	0.99
21_F	369_V	1.997	0.99
308_Y	311_A	1.994	0.99
59_D	62_K	1.980	0.99
224_A	287_T	1.977	0.99
419_Q	424_I	1.955	0.99
94_G	97_A	1.950	0.99
268_N	351_S	1.928	0.99
234_K	256_T	1.923	0.99
253_Q	366_N	1.877	0.99
288_A	292_G	1.869	0.99
93_E	97_A	1.862	0.99
52_V	64_V	1.857	0.99
76_L	86_V	1.834	0.99
47_E	50_T	1.832	0.99
253_Q	290_V	1.829	0.99
274_L	280_E	1.821	0.99
164_T	167_G	1.816	0.99
305_F	344_S	1.794	0.98
158_N	164_T	1.792	0.98
151_K	154_E	1.786	0.98
14_R	346_E	1.769	0.98
211_F	214_A	1.755	0.98
257_A	284_D	1.754	0.98
292_G	298_T	1.739	0.98
43_S	72_S	1.738	0.98
161_V	164_T	1.730	0.98
93_E	101_I	1.726	0.98
399_A	404_L	1.694	0.98
45_W	115_K	1.693	0.98
414_Y	418_L	1.691	0.98
415_M	424_I	1.687	0.98
327_L	347_K	1.672	0.97
198_G	201_K	1.664	0.97
113_G	117_N	1.660	0.97
289_W	293_A	1.634	0.97
427_F	432_D	1.616	0.97
428_D	431_E	1.612	0.97
151_K	156_T	1.610	0.97
289_W	345_V	1.607	0.97
149_V	152_A	1.598	0.97
129_D	132_S	1.596	0.97
150_K	154_E	1.594	0.97
14_R	320_H	1.594	0.97
398_P	455_A	1.586	0.96
242_K	263_Y	1.576	0.96
388_K	407_V	1.562	0.96
365_K	442_D	1.550	0.96
38_A	89_Y	1.549	0.96
113_G	198_G	1.542	0.96
53_S	85_T	1.518	0.95
137_T	145_D	1.515	0.95
45_W	111_Y	1.499	0.95
94_G	99_A	1.481	0.95
95_V	98_S	1.476	0.95
405_Q	408_K	1.465	0.94
149_V	154_E	1.464	0.94
289_W	292_G	1.459	0.94
37_V	79_A	1.455	0.94
238_A	242_K	1.455	0.94
113_G	116_G	1.451	0.94
36_T	85_T	1.445	0.94
25_A	28_R	1.440	0.94
424_I	450_V	1.433	0.94
109_A	116_G	1.431	0.94
215_A	223_I	1.426	0.94
144_V	147_Q	1.425	0.94
378_D	414_Y	1.416	0.93
46_G	90_R	1.401	0.93
327_L	346_E	1.397	0.93
23_T	362_K	1.391	0.93
47_E	63_K	1.391	0.93
204_V	207_D	1.384	0.93
137_T	144_V	1.365	0.92
240_F	244_L	1.361	0.92
205_N	233_L	1.360	0.92
161_V	165_G	1.360	0.92
67_S	70_D	1.358	0.92
320_H	324_V	1.352	0.92
447_D	462_N	1.339	0.91
93_E	99_A	1.337	0.91
429_S	432_D	1.336	0.91
319_D	322_T	1.335	0.91
223_I	240_F	1.333	0.91
124_N	136_T	1.331	0.91
38_A	215_A	1.328	0.91
368_I	452_P	1.327	0.91
109_A	113_G	1.326	0.91
326_R	333_L	1.321	0.91
434_T	437_M	1.318	0.91
327_L	349_I	1.316	0.91
94_G	98_S	1.284	0.89
21_F	376_N	1.283	0.89
415_M	450_V	1.279	0.89
347_K	457_E	1.276	0.89
253_Q	267_I	1.276	0.89
300_N	423_G	1.275	0.89
163_F	167_G	1.262	0.89
31_L	374_A	1.260	0.89
150_K	153_E	1.255	0.88
138_Y	143_E	1.254	0.88
107_A	121_I	1.240	0.88
160_Y	164_T	1.227	0.87
427_F	431_E	1.225	0.87
288_A	294_S	1.217	0.87
451_Q	455_A	1.198	0.86
245_R	373_D	1.193	0.86
116_G	119_I	1.193	0.86
192_G	204_V	1.180	0.85
294_S	370_R	1.166	0.84
350_N	369_V	1.164	0.84
147_Q	158_N	1.164	0.84
135_V	145_D	1.152	0.84
145_D	149_V	1.152	0.84
136_T	143_E	1.146	0.83
210_D	213_A	1.142	0.83
327_L	335_T	1.142	0.83
162_T	166_T	1.140	0.83
412_T	416_T	1.133	0.83
195_L	198_G	1.131	0.82
125_Q	129_D	1.125	0.82
446_I	461_F	1.119	0.82
303_L	366_N	1.118	0.82
97_A	100_D	1.112	0.81
21_F	337_D	1.111	0.81
389_S	426_G	1.110	0.81
363_F	372_L	1.106	0.81
35_G	84_K	1.105	0.81
46_G	64_V	1.103	0.81
244_L	252_V	1.102	0.81
270_T	318_L	1.101	0.81
29_V	382_E	1.101	0.81
126_N	129_D	1.099	0.81
389_S	396_D	1.096	0.80
313_D	317_R	1.089	0.80
111_Y	115_K	1.084	0.80
415_M	448_L	1.084	0.80
223_I	254_G	1.082	0.80
105_V	152_A	1.078	0.79
39_L	76_L	1.078	0.79
139_M	142_S	1.067	0.79
150_K	158_N	1.060	0.78
114_T	200_D	1.059	0.78
76_L	88_M	1.058	0.78
137_T	147_Q	1.053	0.78
20_N	462_N	1.053	0.78
97_A	101_I	1.043	0.77
305_F	365_K	1.039	0.77
41_V	72_S	1.035	0.76
257_A	294_S	1.034	0.76
13_E	324_V	1.029	0.76
438_N	445_L	1.026	0.76
379_L	461_F	1.024	0.76
234_K	254_G	1.021	0.75
136_T	146_K	1.021	0.75
365_K	457_E	1.019	0.75
46_G	113_G	1.019	0.75
49_K	89_Y	1.014	0.75
188_N	194_R	1.011	0.75
79_A	288_A	1.011	0.75
275_L	281_V	1.002	0.74
347_K	365_K	0.999	0.74
347_K	442_D	0.997	0.74
38_A	223_I	0.995	0.74
438_N	442_D	0.992	0.73
211_F	215_A	0.988	0.73
17_I	452_P	0.988	0.73
37_V	291_A	0.987	0.73
124_N	127_V	0.985	0.73
375_V	415_M	0.979	0.72
368_I	454_D	0.976	0.72
442_D	455_A	0.976	0.72
123_I	126_N	0.975	0.72
281_V	284_D	0.969	0.72
49_K	91_L	0.961	0.71
294_S	347_K	0.961	0.71
122_R	138_Y	0.961	0.71
325_E	329_K	0.954	0.70
149_V	155_L	0.948	0.70
326_R	331_E	0.945	0.70
103_E	108_T	0.940	0.69
322_T	377_N	0.940	0.69
265_G	269_V	0.939	0.69
132_S	150_K	0.938	0.69
91_L	277_D	0.937	0.69
231_D	235_A	0.934	0.69
187_L	191_A	0.932	0.69
147_Q	150_K	0.931	0.68
105_V	110_V	0.925	0.68
294_S	298_T	0.924	0.68
417_T	421_A	0.922	0.68
216_E	244_L	0.917	0.67
153_E	156_T	0.916	0.67
282_T	285_K	0.915	0.67
13_E	328_G	0.913	0.67
105_V	133_F	0.908	0.67
25_A	193_I	0.906	0.66
107_A	138_Y	0.903	0.66
81_K	310_G	0.901	0.66
118_D	187_L	0.899	0.66
433_I	447_D	0.897	0.66
211_F	218_E	0.897	0.66
280_E	315_L	0.896	0.65
14_R	327_L	0.895	0.65
398_P	418_L	0.892	0.65
145_D	158_N	0.891	0.65
266_I	269_V	0.890	0.65
29_V	378_D	0.885	0.65
365_K	454_D	0.883	0.64
158_N	200_D	0.881	0.64
14_R	323_I	0.881	0.64
195_L	200_D	0.880	0.64
297_A	301_Q	0.880	0.64
47_E	90_R	0.879	0.64
419_Q	426_G	0.878	0.64
80_K	83_A	0.875	0.64
323_I	346_E	0.872	0.63
403_G	456_A	0.872	0.63
290_V	366_N	0.870	0.63
418_L	421_A	0.868	0.63
367_K	398_P	0.867	0.63
291_A	422_G	0.866	0.63
283_P	344_S	0.860	0.62
205_N	230_G	0.858	0.62
283_P	334_F	0.857	0.62
425_T	453_V	0.855	0.62
152_A	155_L	0.853	0.62
206_S	210_D	0.852	0.62
415_M	453_V	0.852	0.62
273_V	278_G	0.851	0.61
48_A	112_G	0.850	0.61
107_A	123_I	0.850	0.61
288_A	293_A	0.847	0.61
147_Q	155_L	0.846	0.61
258_N	351_S	0.845	0.61
139_M	143_E	0.842	0.61
375_V	414_Y	0.841	0.61
110_V	166_T	0.838	0.60
187_L	190_S	0.838	0.60
161_V	166_T	0.838	0.60
135_V	143_E	0.838	0.60
133_F	153_E	0.837	0.60
269_V	332_F	0.834	0.60
46_G	109_A	0.830	0.60
374_A	418_L	0.830	0.60
58_E	62_K	0.827	0.59
154_E	158_N	0.823	0.59
404_L	456_A	0.821	0.59
95_V	100_D	0.820	0.59
327_L	333_L	0.818	0.58
42_A	71_P	0.816	0.58
188_N	191_A	0.815	0.58
225_L	237_F	0.814	0.58
17_I	459_F	0.812	0.58
32_S	378_D	0.810	0.58
74_L	78_E	0.808	0.57
117_N	125_Q	0.806	0.57
117_N	198_G	0.804	0.57
114_T	140_D	0.804	0.57
221_D	373_D	0.804	0.57
152_A	164_T	0.801	0.57
16_G	370_R	0.798	0.57
17_I	456_A	0.797	0.56
418_L	423_G	0.796	0.56
374_A	378_D	0.796	0.56
147_Q	152_A	0.796	0.56
365_K	458_K	0.795	0.56
163_F	287_T	0.795	0.56
299_F	414_Y	0.794	0.56
154_E	165_G	0.794	0.56
222_V	253_Q	0.793	0.56
95_V	99_A	0.793	0.56
267_I	366_N	0.792	0.56
140_D	148_T	0.791	0.56
115_K	139_M	0.789	0.56
193_I	209_T	0.789	0.56
46_G	198_G	0.787	0.55
114_T	117_N	0.787	0.55
294_S	297_A	0.787	0.55
216_E	240_F	0.786	0.55
266_I	351_S	0.786	0.55
336_F	343_V	0.780	0.55
17_I	40_P	0.778	0.55
83_A	86_V	0.778	0.55
379_L	415_M	0.777	0.54
133_F	138_Y	0.773	0.54
14_R	305_F	0.773	0.54
371_V	418_L	0.772	0.54
104_G	331_E	0.771	0.54
226_P	330_G	0.769	0.54
347_K	396_D	0.768	0.54
262_D	353_V	0.766	0.53
407_V	456_A	0.765	0.53
112_G	115_K	0.764	0.53
302_S	348_D	0.763	0.53
398_P	456_A	0.763	0.53
150_K	155_L	0.762	0.53
99_A	117_N	0.760	0.53
127_V	132_S	0.756	0.52
226_P	257_A	0.753	0.52
93_E	100_D	0.751	0.52
222_V	290_V	0.751	0.52
162_T	168_D	0.750	0.52
137_T	165_G	0.749	0.52
379_L	414_Y	0.747	0.52
267_I	332_F	0.747	0.52
145_D	150_K	0.745	0.51
411_I	414_Y	0.744	0.51
184_A	187_L	0.743	0.51
346_E	349_I	0.743	0.51
117_N	199_T	0.741	0.51
211_F	217_T	0.740	0.51
133_F	145_D	0.738	0.51
214_A	277_D	0.736	0.51
89_Y	211_F	0.734	0.50
113_G	195_L	0.734	0.50
74_L	279_T	0.734	0.50
426_G	431_E	0.731	0.50
106_K	142_S	0.731	0.50
332_F	396_D	0.729	0.50
55_S	321_D	0.729	0.50
332_F	366_N	0.727	0.50
117_N	201_K	0.727	0.50
90_R	240_F	0.727	0.50
426_G	455_A	0.725	0.49
305_F	380_T	0.723	0.49
145_D	148_T	0.723	0.49
433_I	437_M	0.722	0.49
448_L	461_F	0.722	0.49
121_I	345_V	0.722	0.49
121_I	137_T	0.721	0.49
451_Q	458_K	0.719	0.49
263_Y	266_I	0.718	0.49
150_K	161_V	0.717	0.49
429_S	446_I	0.712	0.48
389_S	456_A	0.711	0.48
49_K	210_D	0.711	0.48
51_F	87_L	0.710	0.48
323_I	333_L	0.709	0.48
126_N	148_T	0.709	0.48
212_L	237_F	0.708	0.48
272_G	282_T	0.707	0.48
109_A	115_K	0.701	0.47
98_S	153_E	0.701	0.47
349_I	365_K	0.701	0.47
135_V	160_Y	0.699	0.47
60_L	76_L	0.698	0.47
48_A	92_T	0.697	0.47
292_G	297_A	0.696	0.47
155_L	161_V	0.696	0.47
327_L	365_K	0.696	0.47
69_D	437_M	0.695	0.47
80_K	86_V	0.694	0.46
18_Y	333_L	0.693	0.46
13_E	418_L	0.692	0.46
256_T	415_M	0.692	0.46
311_A	343_V	0.687	0.46
332_F	345_V	0.687	0.46
286_A	366_N	0.687	0.46
254_G	415_M	0.687	0.46
271_E	426_G	0.686	0.46
140_D	144_V	0.684	0.46
305_F	461_F	0.683	0.45
419_Q	427_F	0.683	0.45
303_L	332_F	0.683	0.45
396_D	399_A	0.682	0.45
115_K	119_I	0.678	0.45
302_S	367_K	0.677	0.45
238_A	263_Y	0.676	0.45
438_N	443_G	0.674	0.45
432_D	451_Q	0.672	0.44
12_K	460_Y	0.672	0.44
190_S	194_R	0.672	0.44
189_A	194_R	0.671	0.44
265_G	272_G	0.671	0.44
83_A	432_D	0.671	0.44
379_L	446_I	0.671	0.44
112_G	117_N	0.670	0.44
41_V	326_R	0.669	0.44
338_A	351_S	0.669	0.44
239_A	243_R	0.668	0.44
74_L	277_D	0.666	0.44
212_L	225_L	0.666	0.44
372_L	452_P	0.666	0.44
18_Y	398_P	0.661	0.43
96_R	99_A	0.661	0.43
323_I	335_T	0.660	0.43
134_D	146_K	0.658	0.43
145_D	152_A	0.657	0.43
162_T	165_G	0.656	0.43
294_S	346_E	0.656	0.43
224_A	284_D	0.655	0.43
184_A	198_G	0.654	0.43
186_T	190_S	0.653	0.43
255_V	290_V	0.653	0.43
143_E	146_K	0.652	0.42
31_L	459_F	0.649	0.42
108_T	120_I	0.649	0.42
237_F	344_S	0.648	0.42
98_S	194_R	0.648	0.42
266_I	271_E	0.647	0.42
226_P	457_E	0.646	0.42
32_S	322_T	0.645	0.42
258_N	262_D	0.644	0.42
371_V	453_V	0.644	0.42
288_A	298_T	0.643	0.42
106_K	155_L	0.643	0.42
323_I	327_L	0.643	0.42
431_E	449_A	0.641	0.41
35_G	221_D	0.640	0.41
305_F	410_M	0.636	0.41
346_E	365_K	0.636	0.41
321_D	324_V	0.632	0.41
182_T	204_V	0.631	0.41
414_Y	424_I	0.630	0.40
367_K	371_V	0.628	0.40
294_S	456_A	0.626	0.40
12_K	20_N	0.626	0.40
217_T	441_R	0.626	0.40
186_T	189_A	0.625	0.40
40_P	211_F	0.624	0.40
304_T	341_K	0.624	0.40
35_G	79_A	0.623	0.40
241_I	252_V	0.622	0.40
98_S	108_T	0.622	0.40
231_D	313_D	0.622	0.40
157_A	168_D	0.621	0.40
382_E	410_M	0.620	0.39
153_E	157_A	0.619	0.39
203_P	210_D	0.618	0.39
200_D	203_P	0.618	0.39
403_G	455_A	0.618	0.39
153_E	274_L	0.617	0.39
271_E	455_A	0.617	0.39
365_K	455_A	0.617	0.39
346_E	457_E	0.615	0.39
155_L	158_N	0.615	0.39
414_Y	448_L	0.614	0.39
160_Y	239_A	0.613	0.39
131_N	154_E	0.612	0.39
371_V	452_P	0.610	0.39
135_V	164_T	0.609	0.38
154_E	161_V	0.609	0.38
297_A	306_V	0.609	0.38
95_V	132_S	0.609	0.38
76_L	79_A	0.609	0.38
51_F	80_K	0.608	0.38
116_G	198_G	0.608	0.38
160_Y	166_T	0.608	0.38
344_S	353_V	0.607	0.38
43_S	197_G	0.606	0.38
136_T	139_M	0.605	0.38
31_L	414_Y	0.603	0.38
257_A	346_E	0.601	0.38
35_G	378_D	0.601	0.38
68_I	71_P	0.599	0.38
388_K	459_F	0.598	0.37
428_D	449_A	0.596	0.37
139_M	153_E	0.595	0.37
115_K	118_D	0.594	0.37
101_I	122_R	0.592	0.37
103_E	106_K	0.592	0.37
21_F	347_K	0.592	0.37
39_L	75_L	0.589	0.37
277_D	368_I	0.589	0.37
375_V	448_L	0.588	0.37
121_I	181_D	0.588	0.37
451_Q	457_E	0.586	0.36
131_N	134_D	0.586	0.36
292_G	309_E	0.585	0.36
352_L	369_V	0.583	0.36
232_Q	438_N	0.583	0.36
335_T	346_E	0.576	0.35
330_G	457_E	0.575	0.35
16_G	368_I	0.575	0.35
94_G	100_D	0.575	0.35
118_D	123_I	0.575	0.35
135_V	138_Y	0.574	0.35
109_A	117_N	0.574	0.35
253_Q	369_V	0.573	0.35
231_D	239_A	0.573	0.35
400_S	425_T	0.572	0.35
19_F	450_V	0.572	0.35
181_D	186_T	0.571	0.35
198_G	204_V	0.571	0.35
409_T	416_T	0.570	0.35
434_T	447_D	0.570	0.35
135_V	155_L	0.569	0.35
342_S	347_K	0.569	0.35
272_G	283_P	0.568	0.35
410_M	413_Q	0.568	0.35
269_V	272_G	0.567	0.35
110_V	115_K	0.566	0.35
21_F	301_Q	0.566	0.35
105_V	186_T	0.566	0.35
453_V	459_F	0.565	0.35
334_F	343_V	0.564	0.34
335_T	365_K	0.564	0.34
62_K	123_I	0.563	0.34
140_D	149_V	0.561	0.34
185_E	191_A	0.560	0.34
114_T	196_S	0.560	0.34
202_A	209_T	0.559	0.34
123_I	207_D	0.557	0.34
454_D	457_E	0.557	0.34
54_I	112_G	0.557	0.34
181_D	197_G	0.557	0.34
403_G	442_D	0.556	0.34
38_A	440_D	0.553	0.33
183_A	186_T	0.551	0.33
415_M	419_Q	0.551	0.33
254_G	372_L	0.551	0.33
53_S	87_L	0.551	0.33
301_Q	306_V	0.550	0.33
342_S	346_E	0.549	0.33
280_E	283_P	0.549	0.33
319_D	364_A	0.548	0.33
205_N	209_T	0.548	0.33
365_K	396_D	0.547	0.33
349_I	379_L	0.546	0.33
267_I	302_S	0.546	0.33
262_D	289_W	0.545	0.33
137_T	140_D	0.544	0.33
62_K	182_T	0.543	0.33
346_E	350_N	0.541	0.32
145_D	154_E	0.540	0.32
40_P	268_N	0.540	0.32
35_G	302_S	0.540	0.32
215_A	218_E	0.539	0.32
233_L	236_T	0.537	0.32
257_A	347_K	0.536	0.32
15_A	396_D	0.536	0.32
292_G	306_V	0.536	0.32
140_D	143_E	0.535	0.32
301_Q	369_V	0.535	0.32
49_K	207_D	0.533	0.32
166_T	189_A	0.533	0.32
138_Y	192_G	0.532	0.32
332_F	369_V	0.532	0.32
34_R	221_D	0.532	0.32
223_I	237_F	0.531	0.32
134_D	140_D	0.528	0.31
114_T	131_N	0.527	0.31
78_E	281_V	0.526	0.31
103_E	186_T	0.525	0.31
117_N	195_L	0.524	0.31
102_A	185_E	0.524	0.31
26_Q	402_D	0.524	0.31
93_E	96_R	0.524	0.31
327_L	455_A	0.523	0.31
95_V	232_Q	0.522	0.31
378_D	403_G	0.522	0.31
98_S	101_I	0.520	0.31
40_P	253_Q	0.519	0.31
411_I	446_I	0.519	0.31
234_K	260_A	0.519	0.31
220_F	240_F	0.519	0.31
121_I	163_F	0.518	0.31
206_S	229_E	0.518	0.31
365_K	451_Q	0.517	0.30
300_N	424_I	0.516	0.30
54_I	64_V	0.516	0.30
332_F	397_I	0.516	0.30
100_D	188_N	0.516	0.30
116_G	195_L	0.515	0.30
127_V	155_L	0.515	0.30
127_V	134_D	0.514	0.30
226_P	327_L	0.514	0.30
204_V	209_T	0.513	0.30
91_L	143_E	0.511	0.30
281_V	315_L	0.510	0.30
133_F	139_M	0.510	0.30
62_K	375_V	0.509	0.30
302_S	332_F	0.508	0.30
208_Y	216_E	0.508	0.30
397_I	400_S	0.508	0.30
271_E	369_V	0.507	0.30
110_V	181_D	0.507	0.30
34_R	374_A	0.506	0.30
107_A	153_E	0.506	0.30
41_V	331_E	0.506	0.30
25_A	216_E	0.504	0.29
352_L	360_N	0.503	0.29
119_I	183_A	0.503	0.29
347_K	379_L	0.501	0.29
267_I	290_V	0.501	0.29
274_L	313_D	0.500	0.29

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3j2mU	1	0.8433	100	0.294	Contact Map
3hxlA	1	0.8863	100	0.33	Contact Map
3lmlA	1	0.9185	100	0.332	Contact Map
3j9qA	8	0.7189	100	0.436	Contact Map
3foaA	1	0.5687	100	0.579	Contact Map
3fo8D	4	0.3691	53.5	0.965	Contact Map
1ywmA	1	0.0966	16.2	0.973	Contact Map
4ycsA	1	0.2597	12.8	0.975	Contact Map
3qdsA	4	0.2339	7.6	0.977	Contact Map
4hrzA	2	0.2403	7.5	0.977	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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