UGTP - BACSU - GREMLIN Contacts

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UGTP - Processive diacylglycerol beta-glucosyltransferase

UniProt:	P54166	Sequences: MNTNKRVLILTANYGNGHVQVAKTLYEQCVRLGFQHVTVSNLYQESNPIVSEVTQYLYLKSFSIGKQFYRLFYYGVDKIYNKRKFNIYFKMGNKRLGELVDEHQPDIIINTFPMIVVPEYRRRTGRVIPTFNVMTDFCLHKIWVHENVDKYYVATDYVKEKLLEIGTHPSNVKITGIPIRPQFEESMPVGPIYKKYNLSPNKKVLLIMAGAHGVLKNVKELCENLVKDDQVQVVVVCGKNTALKESLSALEAENGDKLKVLGYVERIDELFRITDCMITKPGGITLTEATAIGVPVILYKPVPGQEKENANFFEDRGAAIVVNRHEEILESVTSLLADEDTLHRMKKNIKDLHLANSSEVILEDILKESEMMTAKQKAKVLS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	382 (338)
Sequences:	20267 (16137)
Seq/√Len:	877.8

ECOLI - MURG
BACSU - UGTP YKON MURG YJIC YOJK YDHE SPSG
SULSO - Q97VW9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
313_F	319_A	3.143	1.00
28_Q	31_R	2.989	1.00
344_R	347_K	2.925	1.00
281_P	298_L	2.847	1.00
32_L	363_E	2.570	1.00
342_L	346_K	2.518	1.00
97_G	125_G	2.456	1.00
298_L	310_A	2.394	1.00
297_I	335_L	2.367	1.00
329_L	333_T	2.360	1.00
311_N	315_D	2.332	1.00
320_I	334_S	2.320	1.00
314_E	321_V	2.314	1.00
334_S	341_T	2.310	1.00
50_V	54_T	2.302	1.00
28_Q	32_L	2.284	1.00
101_D	126_R	2.275	1.00
334_S	338_D	2.251	1.00
7_V	35_Q	2.205	1.00
28_Q	359_E	2.191	1.00
202_K	232_Q	2.182	1.00
98_E	102_E	2.149	1.00
344_R	348_N	2.144	1.00
277_M	289_A	2.134	1.00
356_N	360_V	2.111	1.00
10_L	26_Y	2.098	1.00
349_I	353_H	2.077	1.00
333_T	337_A	2.076	1.00
343_H	347_K	2.067	1.00
327_E	331_S	2.055	1.00
215_L	219_K	2.053	1.00
40_S	103_H	2.051	1.00
244_K	248_S	2.040	1.00
320_I	331_S	1.964	1.00
348_N	351_D	1.951	1.00
339_E	343_H	1.927	1.00
97_G	126_R	1.922	1.00
228_D	329_L	1.920	1.00
356_N	359_E	1.911	1.00
289_A	296_V	1.908	1.00
173_K	364_D	1.834	1.00
140_H	144_V	1.832	1.00
110_N	130_T	1.816	1.00
341_T	344_R	1.788	1.00
150_K	154_A	1.754	1.00
266_R	269_E	1.754	1.00
7_V	40_S	1.746	1.00
216_K	220_E	1.746	1.00
277_M	285_T	1.740	1.00
40_S	61_S	1.728	1.00
331_S	334_S	1.720	1.00
51_S	55_Q	1.711	1.00
279_T	296_V	1.695	1.00
345_M	348_N	1.673	1.00
244_K	247_L	1.667	1.00
204_V	232_Q	1.666	1.00
286_L	313_F	1.660	1.00
232_Q	259_K	1.638	1.00
276_C	335_L	1.634	1.00
199_S	232_Q	1.611	1.00
304_G	307_K	1.604	1.00
359_E	363_E	1.569	1.00
139_L	142_I	1.537	1.00
347_K	351_D	1.537	1.00
320_I	341_T	1.526	1.00
346_K	349_I	1.515	1.00
88_Y	92_G	1.513	1.00
255_G	258_L	1.505	1.00
261_L	264_V	1.503	1.00
205_L	278_I	1.498	1.00
151_Y	154_A	1.496	1.00
338_D	341_T	1.486	1.00
311_N	314_E	1.485	1.00
206_L	274_T	1.481	1.00
360_V	363_E	1.479	1.00
190_G	194_K	1.459	1.00
276_C	332_V	1.454	1.00
277_M	294_V	1.454	1.00
95_R	98_E	1.451	1.00
153_V	156_D	1.442	1.00
297_I	331_S	1.441	1.00
139_L	143_W	1.438	1.00
219_K	223_E	1.438	1.00
247_L	250_L	1.419	1.00
32_L	362_L	1.409	1.00
158_V	161_K	1.405	1.00
340_D	343_H	1.390	1.00
9_I	42_L	1.385	1.00
138_C	141_K	1.379	1.00
8_L	107_I	1.377	1.00
341_T	345_M	1.349	1.00
139_L	144_V	1.344	1.00
8_L	29_C	1.344	1.00
203_K	275_D	1.340	1.00
28_Q	358_S	1.335	1.00
217_N	221_L	1.335	1.00
97_G	101_D	1.325	1.00
340_D	344_R	1.322	1.00
220_E	223_E	1.321	1.00
348_N	352_L	1.314	1.00
108_I	123_R	1.290	1.00
150_K	155_T	1.288	1.00
269_E	272_R	1.280	1.00
150_K	173_K	1.278	1.00
109_I	131_F	1.274	1.00
205_L	276_C	1.273	1.00
141_K	144_V	1.265	1.00
8_L	34_F	1.262	1.00
327_E	330_E	1.261	1.00
217_N	225_L	1.258	1.00
312_F	315_D	1.248	1.00
150_K	153_V	1.247	1.00
222_C	225_L	1.245	1.00
150_K	156_D	1.242	1.00
200_P	232_Q	1.233	1.00
313_F	318_A	1.226	1.00
28_Q	362_L	1.222	1.00
330_E	334_S	1.219	1.00
27_E	30_V	1.216	1.00
358_S	362_L	1.215	1.00
229_D	333_T	1.205	1.00
159_K	162_L	1.202	1.00
220_E	224_N	1.196	1.00
131_F	152_Y	1.196	1.00
29_C	362_L	1.192	1.00
193_Y	197_N	1.191	1.00
120_Y	130_T	1.186	1.00
360_V	364_D	1.182	1.00
245_E	248_S	1.172	1.00
74_Y	77_D	1.155	1.00
314_E	320_I	1.154	1.00
147_N	151_Y	1.152	1.00
271_F	292_I	1.150	1.00
218_V	222_C	1.150	1.00
17_G	21_V	1.149	1.00
131_F	365_I	1.141	1.00
347_K	350_K	1.140	1.00
318_A	348_N	1.138	1.00
246_S	250_L	1.135	1.00
50_V	60_K	1.134	1.00
140_H	143_W	1.130	1.00
326_E	330_E	1.122	1.00
341_T	348_N	1.121	1.00
57_L	60_K	1.111	1.00
98_E	101_D	1.110	1.00
202_K	230_Q	1.107	1.00
215_L	218_V	1.103	1.00
239_K	262_G	1.101	1.00
122_R	126_R	1.099	1.00
59_L	62_F	1.095	1.00
339_E	342_L	1.093	1.00
231_V	333_T	1.092	1.00
192_I	195_K	1.089	1.00
320_I	335_L	1.086	1.00
57_L	61_S	1.079	1.00
148_V	152_Y	1.076	1.00
107_I	131_F	1.071	1.00
74_Y	78_K	1.069	1.00
350_K	354_L	1.069	1.00
138_C	142_I	1.069	1.00
307_K	311_N	1.068	1.00
86_N	90_K	1.068	1.00
322_V	331_S	1.066	1.00
51_S	54_T	1.061	1.00
30_V	39_V	1.058	1.00
9_I	105_P	1.058	1.00
94_K	98_E	1.057	1.00
206_L	236_V	1.056	1.00
10_L	22_A	1.055	1.00
32_L	359_E	1.054	1.00
25_L	361_I	1.046	1.00
152_Y	361_I	1.036	1.00
205_L	233_V	1.036	1.00
10_L	109_I	1.036	1.00
20_Q	263_Y	1.033	1.00
236_V	264_V	1.029	1.00
245_E	249_A	1.026	1.00
354_L	360_V	1.022	1.00
204_V	274_T	1.021	1.00
207_I	233_V	1.021	1.00
290_T	318_A	1.015	1.00
73_Y	76_V	1.014	1.00
149_D	153_V	1.009	1.00
342_L	348_N	1.006	1.00
83_R	86_N	1.001	1.00
293_G	350_K	1.000	1.00
228_D	333_T	0.999	1.00
246_S	249_A	0.999	1.00
16_N	20_Q	0.999	1.00
297_I	320_I	0.997	1.00
152_Y	364_D	0.996	1.00
217_N	220_E	0.995	1.00
138_C	144_V	0.994	1.00
234_V	270_L	0.990	1.00
350_K	353_H	0.989	1.00
149_D	155_T	0.985	1.00
191_P	194_K	0.985	1.00
222_C	226_V	0.984	1.00
138_C	143_W	0.977	1.00
52_E	55_Q	0.972	1.00
343_H	346_K	0.969	1.00
218_V	225_L	0.965	1.00
278_I	299_Y	0.961	1.00
217_N	223_E	0.959	1.00
346_K	350_K	0.957	1.00
223_E	226_V	0.956	1.00
147_N	150_K	0.956	1.00
175_T	178_P	0.953	1.00
82_K	86_N	0.949	1.00
123_R	130_T	0.947	1.00
152_Y	155_T	0.942	1.00
70_R	74_Y	0.940	1.00
190_G	193_Y	0.934	1.00
312_F	316_R	0.925	1.00
57_L	62_F	0.922	1.00
35_Q	59_L	0.921	1.00
61_S	102_E	0.918	1.00
45_E	62_F	0.916	1.00
115_I	118_P	0.914	1.00
193_Y	273_I	0.912	1.00
298_L	313_F	0.911	1.00
124_T	147_N	0.908	1.00
307_K	323_N	0.908	1.00
148_V	155_T	0.907	1.00
27_E	31_R	0.905	1.00
151_Y	156_D	0.904	1.00
180_R	183_F	0.903	1.00
335_L	341_T	0.900	1.00
158_V	162_L	0.900	1.00
53_V	58_Y	0.900	1.00
80_Y	83_R	0.896	1.00
150_K	364_D	0.896	1.00
317_G	344_R	0.891	1.00
204_V	234_V	0.891	1.00
217_N	224_N	0.890	1.00
9_I	100_V	0.883	1.00
15_G	212_H	0.881	1.00
151_Y	155_T	0.880	1.00
173_K	176_G	0.880	1.00
96_L	100_V	0.878	1.00
84_K	88_Y	0.878	1.00
56_Y	61_S	0.877	1.00
44_Q	47_N	0.867	1.00
76_V	79_I	0.867	1.00
320_I	323_N	0.867	1.00
27_E	58_Y	0.865	1.00
156_D	159_K	0.862	1.00
58_Y	61_S	0.860	1.00
84_K	87_I	0.852	1.00
311_N	321_V	0.851	1.00
159_K	169_P	0.847	1.00
85_F	89_F	0.844	1.00
206_L	266_R	0.840	1.00
191_P	195_K	0.839	1.00
152_Y	175_T	0.837	1.00
218_V	221_L	0.836	1.00
278_I	328_I	0.832	1.00
286_L	309_N	0.832	1.00
22_A	41_N	0.829	1.00
342_L	349_I	0.829	1.00
296_V	319_A	0.829	1.00
27_E	56_Y	0.826	1.00
298_L	319_A	0.826	1.00
263_Y	266_R	0.825	1.00
203_K	336_L	0.825	1.00
341_T	349_I	0.822	1.00
110_N	119_E	0.820	1.00
108_I	128_I	0.814	1.00
94_K	97_G	0.812	1.00
342_L	345_M	0.811	1.00
149_D	154_A	0.809	1.00
254_N	258_L	0.807	1.00
145_H	151_Y	0.806	1.00
148_V	154_A	0.805	1.00
69_Y	73_Y	0.804	1.00
235_V	238_G	0.803	1.00
72_F	76_V	0.802	1.00
71_L	76_V	0.801	1.00
152_Y	156_D	0.798	1.00
72_F	75_G	0.797	1.00
217_N	222_C	0.791	1.00
213_G	302_V	0.790	1.00
293_G	349_I	0.789	1.00
296_V	313_F	0.788	1.00
208_M	267_I	0.788	1.00
310_A	321_V	0.787	1.00
198_L	232_Q	0.786	1.00
217_N	226_V	0.784	1.00
88_Y	91_M	0.782	1.00
216_K	219_K	0.780	1.00
244_K	262_G	0.778	1.00
244_K	250_L	0.777	1.00
293_G	345_M	0.776	1.00
219_K	225_L	0.776	1.00
228_D	337_A	0.775	1.00
25_L	358_S	0.772	1.00
26_Y	58_Y	0.772	1.00
80_Y	84_K	0.772	1.00
171_N	175_T	0.766	1.00
221_L	225_L	0.764	1.00
281_P	310_A	0.758	1.00
87_I	91_M	0.758	1.00
18_H	111_T	0.758	1.00
75_G	78_K	0.757	1.00
267_I	271_F	0.757	1.00
268_D	271_F	0.753	1.00
148_V	151_Y	0.752	1.00
286_L	296_V	0.752	1.00
99_L	102_E	0.752	1.00
345_M	349_I	0.751	1.00
218_V	223_E	0.747	1.00
234_V	259_K	0.746	1.00
349_I	352_L	0.746	1.00
174_I	177_I	0.746	1.00
205_L	231_V	0.744	1.00
7_V	103_H	0.744	1.00
75_G	79_I	0.743	1.00
73_Y	77_D	0.743	1.00
30_V	58_Y	0.743	1.00
24_T	27_E	0.739	1.00
54_T	59_L	0.737	1.00
147_N	154_A	0.737	1.00
71_L	74_Y	0.737	1.00
147_N	155_T	0.736	1.00
21_V	284_I	0.733	1.00
274_T	294_V	0.730	1.00
206_L	270_L	0.730	1.00
250_L	255_G	0.730	1.00
254_N	257_K	0.728	1.00
279_T	285_T	0.726	1.00
317_G	348_N	0.725	1.00
69_Y	76_V	0.722	1.00
308_E	311_N	0.721	1.00
355_A	360_V	0.721	1.00
80_Y	88_Y	0.717	1.00
23_K	27_E	0.716	1.00
222_C	235_V	0.710	1.00
362_L	365_I	0.710	1.00
95_R	100_V	0.707	1.00
29_C	34_F	0.702	1.00
27_E	182_Q	0.702	1.00
206_L	271_F	0.699	1.00
10_L	29_C	0.696	1.00
149_D	152_Y	0.696	1.00
146_E	149_D	0.696	1.00
168_H	171_N	0.695	1.00
70_R	73_Y	0.695	1.00
54_T	60_K	0.693	1.00
58_Y	63_S	0.689	1.00
221_L	226_V	0.689	1.00
129_P	149_D	0.687	1.00
294_V	342_L	0.686	1.00
223_E	250_L	0.685	1.00
58_Y	62_F	0.685	1.00
50_V	53_V	0.683	1.00
82_K	85_F	0.682	1.00
109_I	365_I	0.681	1.00
12_A	22_A	0.680	1.00
85_F	88_Y	0.680	1.00
226_V	233_V	0.678	1.00
86_N	89_F	0.676	1.00
145_H	149_D	0.675	1.00
269_E	273_I	0.672	1.00
69_Y	72_F	0.671	1.00
241_T	244_K	0.670	1.00
204_V	273_I	0.670	1.00
289_A	298_L	0.669	1.00
306_E	309_N	0.667	1.00
54_T	57_L	0.665	1.00
219_K	224_N	0.664	1.00
203_K	339_E	0.664	1.00
47_N	50_V	0.663	1.00
89_F	92_G	0.658	1.00
131_F	150_K	0.658	1.00
194_K	198_L	0.657	1.00
53_V	57_L	0.650	1.00
71_L	78_K	0.650	1.00
7_V	106_D	0.649	1.00
194_K	197_N	0.648	1.00
203_K	230_Q	0.648	1.00
181_P	185_E	0.643	1.00
195_K	232_Q	0.642	1.00
71_L	77_D	0.642	1.00
192_I	196_Y	0.641	1.00
53_V	56_Y	0.638	1.00
70_R	75_G	0.636	1.00
53_V	60_K	0.634	1.00
231_V	336_L	0.631	1.00
40_S	59_L	0.630	1.00
217_N	324_R	0.626	1.00
180_R	184_E	0.623	1.00
146_E	150_K	0.623	1.00
107_I	365_I	0.622	1.00
166_G	169_P	0.622	1.00
173_K	177_I	0.620	1.00
35_Q	40_S	0.619	1.00
195_K	259_K	0.616	1.00
147_N	153_V	0.616	1.00
264_V	270_L	0.615	1.00
99_L	103_H	0.614	1.00
221_L	224_N	0.611	1.00
330_E	333_T	0.609	1.00
199_S	202_K	0.608	1.00
276_C	342_L	0.608	1.00
272_R	292_I	0.608	1.00
148_V	156_D	0.607	1.00
215_L	222_C	0.606	1.00
231_V	337_A	0.606	1.00
208_M	285_T	0.605	1.00
219_K	222_C	0.604	1.00
301_P	306_E	0.603	1.00
45_E	50_V	0.603	1.00
145_H	150_K	0.603	1.00
34_F	106_D	0.602	1.00
24_T	180_R	0.602	1.00
230_Q	333_T	0.601	1.00
173_K	360_V	0.601	1.00
153_V	159_K	0.600	1.00
179_I	182_Q	0.600	1.00
81_N	84_K	0.597	1.00
154_A	158_V	0.596	1.00
22_A	111_T	0.596	1.00
55_Q	58_Y	0.591	1.00
147_N	152_Y	0.591	1.00
122_R	125_G	0.590	1.00
50_V	55_Q	0.583	1.00
100_V	126_R	0.582	1.00
145_H	148_V	0.581	1.00
124_T	127_V	0.579	1.00
203_K	231_V	0.579	1.00
69_Y	75_G	0.579	1.00
280_K	306_E	0.579	1.00
42_L	96_L	0.578	1.00
11_T	119_E	0.577	1.00
120_Y	124_T	0.577	1.00
70_R	76_V	0.576	1.00
148_V	153_V	0.573	1.00
203_K	232_Q	0.572	1.00
26_Y	41_N	0.572	1.00
43_Y	47_N	0.571	1.00
82_K	88_Y	0.571	1.00
89_F	95_R	0.570	1.00
179_I	291_A	0.570	1.00
156_D	160_E	0.568	1.00
87_I	92_G	0.568	1.00
291_A	353_H	0.568	1.00
55_Q	265_E	0.564	1.00
235_V	258_L	0.563	1.00
358_S	361_I	0.562	1.00
265_E	268_D	0.562	1.00
290_T	345_M	0.562	1.00
31_R	181_P	0.561	1.00
271_F	277_M	0.560	1.00
219_K	246_S	0.559	1.00
208_M	277_M	0.558	1.00
149_D	156_D	0.558	1.00
225_L	233_V	0.556	1.00
197_N	273_I	0.553	1.00
224_N	328_I	0.553	1.00
73_Y	78_K	0.550	1.00
71_L	75_G	0.548	1.00
150_K	157_Y	0.546	1.00
56_Y	59_L	0.546	1.00
153_V	158_V	0.545	1.00
290_T	313_F	0.544	1.00
218_V	226_V	0.543	1.00
201_N	204_V	0.540	1.00
91_M	95_R	0.538	1.00
56_Y	62_F	0.535	1.00
26_Y	39_V	0.534	1.00
51_S	56_Y	0.533	1.00
229_D	233_V	0.532	1.00
278_I	332_V	0.532	1.00
204_V	275_D	0.532	1.00
70_R	77_D	0.531	1.00
175_T	361_I	0.531	1.00
310_A	314_E	0.530	1.00
94_K	100_V	0.529	1.00
69_Y	77_D	0.529	1.00
56_Y	60_K	0.527	1.00
244_K	249_A	0.525	1.00
61_S	103_H	0.524	1.00
25_L	111_T	0.524	1.00
121_R	125_G	0.524	1.00
104_Q	128_I	0.523	1.00
159_K	174_I	0.520	1.00
72_F	78_K	0.515	1.00
293_G	346_K	0.514	1.00
101_D	125_G	0.512	1.00
31_R	359_E	0.509	1.00
266_R	288_E	0.508	1.00
218_V	237_C	0.508	1.00
226_V	257_K	0.508	1.00
132_N	148_V	0.507	1.00
34_F	39_V	0.507	1.00
153_V	174_I	0.506	1.00
230_Q	257_K	0.506	1.00
43_Y	46_S	0.505	1.00
25_L	178_P	0.504	1.00
84_K	92_G	0.503	1.00
82_K	90_K	0.502	1.00
29_C	39_V	0.501	1.00
206_L	264_V	0.501	1.00
206_L	277_M	0.501	1.00
193_Y	199_S	0.500	1.00
53_V	62_F	0.500	1.00
225_L	329_L	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2iyaA	1	0.8953	100	0.376	Contact Map
2pq6A	1	0.8717	100	0.381	Contact Map
2c1xA	1	0.9162	100	0.382	Contact Map
2vchA	1	0.9293	100	0.385	Contact Map
3hbfA	1	0.9346	100	0.39	Contact Map
3rscA	1	0.8979	100	0.391	Contact Map
2iyfA	1	0.8953	100	0.395	Contact Map
3ia7A	2	0.9005	100	0.402	Contact Map
2p6pA	2	0.8901	100	0.403	Contact Map
2acvA	1	0.9319	100	0.404	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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