GREMLIN Database
YPBQ - Uncharacterized protein YpbQ
UniProt: P54158 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 168 (161)
Sequences: 533 (386)
Seq/√Len: 30.4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
24_E99_L4.6611.00
24_E97_K3.8741.00
9_L130_I3.2951.00
57_E139_T3.2481.00
27_V32_A3.2081.00
75_V125_L3.1801.00
43_I150_L3.0441.00
32_A99_L3.0421.00
66_S135_Q2.8901.00
124_I151_L2.8191.00
89_S109_K2.7081.00
98_I157_A2.5611.00
46_M150_L2.4110.99
93_Y104_V2.2960.99
27_V99_L2.2640.99
56_A60_L2.1970.98
24_E28_K2.0130.97
19_V114_W2.0110.97
78_S82_V2.0050.97
144_S147_N1.9120.96
82_V122_V1.8840.96
65_P69_W1.8270.95
93_Y106_L1.7530.94
101_V104_V1.7040.93
79_V129_L1.6870.93
15_A19_V1.6750.92
32_A160_K1.6440.92
26_K95_N1.6320.91
52_L56_A1.5910.90
128_L144_S1.5720.90
85_W111_P1.5690.90
20_A40_Y1.5530.89
136_A139_T1.5310.88
26_K30_Q1.5270.88
57_E136_A1.4760.87
72_I129_L1.4740.87
26_K92_A1.3660.82
6_I55_I1.3600.82
64_Q138_V1.3600.82
116_K159_D1.3560.81
20_A43_I1.3530.81
95_N139_T1.3290.80
86_A112_Y1.3290.80
93_Y105_E1.3270.80
20_A76_I1.3240.80
10_I55_I1.2930.78
130_I133_L1.2850.78
7_A55_I1.2820.78
28_K33_I1.2800.78
98_I161_A1.2720.77
34_E97_K1.2710.77
60_L141_C1.2640.77
10_I52_L1.1860.72
57_E95_N1.1790.71
109_K153_V1.1590.70
53_S139_T1.1410.69
128_L132_L1.1100.67
80_Q96_T1.1050.66
76_I84_Y1.0990.66
14_A25_Q1.0910.65
20_A93_Y1.0830.65
35_F138_V1.0810.65
113_K132_L1.0700.64
4_L8_I1.0700.64
43_I48_I1.0680.64
47_H120_Y1.0580.63
45_T60_L1.0400.62
98_I150_L1.0370.61
138_V142_L1.0070.59
72_I93_Y1.0060.59
131_P140_M1.0050.59
96_T123_V1.0050.59
5_L53_S1.0040.59
76_I134_Y0.9990.58
82_V86_A0.9900.58
10_I51_F0.9830.57
72_I79_V0.9770.57
15_A18_A0.9650.56
54_L65_P0.9590.55
125_L129_L0.9510.55
41_P49_L0.9450.54
4_L33_I0.9310.53
86_A95_N0.9270.53
9_L156_R0.9230.52
19_V41_P0.9200.52
84_Y122_V0.9200.52
27_V95_N0.9190.52
125_L128_L0.9130.52
43_I46_M0.9110.51
37_E152_S0.9000.51
17_M87_L0.8900.50
155_I160_K0.8890.50
32_A58_V0.8790.49
68_W148_A0.8750.49
16_E80_Q0.8710.48
49_L103_G0.8650.48
8_I160_K0.8650.48
106_L159_D0.8590.47
44_I147_N0.8500.47
80_Q110_G0.8350.45
68_W71_G0.8330.45
50_F54_L0.8260.45
58_V130_I0.8200.44
105_E115_M0.8080.43
50_F95_N0.8070.43
70_L74_A0.8030.43
76_I133_L0.8010.43
35_F104_V0.7990.43
43_I63_K0.7980.42
73_A140_M0.7930.42
15_A163_Q0.7920.42
82_V124_I0.7850.41
3_W107_V0.7820.41
14_A18_A0.7780.41
124_I156_R0.7770.41
46_M148_A0.7730.40
32_A73_A0.7660.40
32_A106_L0.7660.40
127_I144_S0.7660.40
28_K35_F0.7650.40
21_R25_Q0.7620.40
47_H119_N0.7610.40
16_E110_G0.7610.40
146_F150_L0.7590.39
79_V122_V0.7570.39
89_S110_G0.7520.39
8_I81_I0.7500.39
43_I153_V0.7490.39
146_F160_K0.7410.38
87_L98_I0.7400.38
145_I160_K0.7380.38
7_A146_F0.7340.38
102_P112_Y0.7330.37
49_L127_I0.7330.37
60_L142_L0.7280.37
21_R97_K0.7270.37
3_W68_W0.7250.37
32_A66_S0.7210.37
52_L75_V0.7140.36
116_K121_A0.7110.36
27_V51_F0.7100.36
106_L150_L0.7030.35
152_S156_R0.7020.35
53_S143_F0.7000.35
130_I142_L0.6990.35
156_R160_K0.6930.35
43_I146_F0.6910.34
79_V125_L0.6910.34
83_R123_V0.6880.34
52_L55_I0.6780.33
29_K149_V0.6710.33
153_V157_A0.6710.33
10_I14_A0.6700.33
97_K151_L0.6670.33
154_R158_E0.6660.33
29_K38_S0.6650.33
9_L80_Q0.6630.32
16_E162_L0.6630.32
128_L160_K0.6620.32
30_Q125_L0.6610.32
23_N92_A0.6610.32
45_T62_N0.6590.32
58_V136_A0.6590.32
57_E79_V0.6580.32
85_W131_P0.6570.32
55_I125_L0.6510.32
113_K141_C0.6490.31
81_I128_L0.6460.31
9_L82_V0.6430.31
88_C104_V0.6430.31
9_L53_S0.6400.31
74_A81_I0.6390.31
95_N122_V0.6370.31
84_Y101_V0.6360.31
16_E96_T0.6320.30
115_M121_A0.6310.30
69_W115_M0.6290.30
62_N163_Q0.6280.30
32_A149_V0.6280.30
68_W74_A0.6280.30
140_M144_S0.6260.30
30_Q101_V0.6260.30
38_S41_P0.6230.30
42_Y146_F0.6220.30
11_V160_K0.6210.29
12_Q51_F0.6200.29
116_K133_L0.6160.29
15_A74_A0.6150.29
40_Y96_T0.6100.29
155_I159_D0.6040.28
22_Q116_K0.6040.28
146_F163_Q0.5990.28
34_E99_L0.5970.28
19_V76_I0.5960.28
41_P45_T0.5900.27
33_I163_Q0.5900.27
5_L132_L0.5860.27
129_L135_Q0.5850.27
143_F162_L0.5820.27
36_G157_A0.5800.27
34_E37_E0.5800.27
129_L133_L0.5780.27
121_A128_L0.5760.27
73_A149_V0.5700.26
54_L147_N0.5690.26
16_E83_R0.5690.26
3_W74_A0.5650.26
11_V74_A0.5600.26
89_S134_Y0.5570.25
6_I134_Y0.5570.25
4_L45_T0.5560.25
67_S71_G0.5550.25
89_S114_W0.5530.25
35_F66_S0.5510.25
112_Y122_V0.5500.25
100_V162_L0.5480.25
54_L134_Y0.5460.25
82_V115_M0.5460.25
66_S69_W0.5450.25
40_Y80_Q0.5440.25
23_N44_I0.5430.25
58_V116_K0.5420.25
29_K92_A0.5410.24
4_L67_S0.5400.24
37_E41_P0.5390.24
72_I97_K0.5360.24
36_G43_I0.5330.24
112_Y130_I0.5320.24
75_V129_L0.5280.24
124_I144_S0.5280.24
89_S111_P0.5250.24
108_K113_K0.5250.24
116_K136_A0.5250.24
54_L79_V0.5220.23
5_L86_A0.5180.23
19_V150_L0.5170.23
29_K88_C0.5140.23
6_I57_E0.5110.23
12_Q161_A0.5080.23
49_L53_S0.5060.22
15_A33_I0.5010.22
138_V141_C0.5000.22
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4a2nB 1 0.9881 99.7 0.732 Contact Map
4quvA 2 0.9821 99.2 0.803 Contact Map
2sqcA 1 0.7798 5.7 0.964 Contact Map
4ogqF 1 0.1905 2.6 0.97 Contact Map
3oiqA 2 0.3274 2.1 0.971 Contact Map
3j9pD 4 0.8512 1.9 0.972 Contact Map
1w6kA 1 0.8869 1.4 0.974 Contact Map
2mfrA 1 0.1964 1.3 0.975 Contact Map
1xwjB 1 0.1429 1.3 0.975 Contact Map
3aqpA 1 0.9702 1.2 0.975 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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