GUDB - BACSU - GREMLIN Contacts

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GUDB - Cryptic catabolic NAD-specific glutamate dehydrogenase GudB

UniProt:	P50735	Sequences: MAADRNTGHTEEDKLDVLKSTQTVIHKALEKLGYPEEVYELLKEPMRLLTVKIPVRMDDGSVKIFTGYRAQHNDSVGPTKGGIRFHPNVTEKEVKAVKALSIWMSLKCGIIDLPYGGGKGGIVCDPRDMSFRELERLSRGYVRAISQIVGPTKDVPAPDVFTNSQIMAWMMDEYSRIDEFNSPGFITGKPLVLGGSHGRESATAKGVTICIKEAAKKRGIDIKGARVVVQGFGNAGSYLAKFMHDAGAKVVGISDAYGGLYDPEGLDIDYLLDRRDSFGTVTKLFNDTITNQELLELDCDILVPAAIENQITEENAHNIRAKIVVEAANGPTTLEGTKILSDRDILLVPDVLASAGGVTVSYFEWVQNNQGFYWSEEEVEEKLEKMMVKSFNNIYEMANNRRIDMRLAAYMVGVRKMAEASRFRGWI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	427 (395)
Sequences:	5552 (2708)
Seq/√Len:	136.3

ECOLI - DHE4
BACSU - GUDB DHE2 DHLE
HALSA - DHEB DHE4 DHE
SULSO - Q97X22 DHE2 Q97Y81 Q97WS2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
243_M	248_A	4.440	1.00
229_V	240_A	3.782	1.00
296_E	318_N	3.643	1.00
228_V	299_C	3.598	1.00
299_C	321_A	3.375	1.00
211_I	325_V	3.351	1.00
46_M	74_D	3.193	1.00
273_D	277_S	3.109	1.00
298_D	320_R	3.091	1.00
338_K	342_D	2.854	1.00
132_R	136_R	2.682	1.00
115_Y	362_Y	2.612	1.00
226_R	249_K	2.573	1.00
340_L	345_I	2.539	1.00
125_D	128_D	2.534	1.00
252_G	294_L	2.499	1.00
213_E	216_K	2.498	1.00
220_I	225_A	2.476	1.00
240_A	253_I	2.452	1.00
341_S	404_D	2.420	1.00
160_V	307_I	2.391	1.00
213_E	388_V	2.382	1.00
108_C	358_V	2.380	1.00
143_R	173_E	2.252	1.00
267_D	270_Y	2.244	1.00
50_T	94_V	2.192	1.00
241_K	245_D	2.156	1.00
210_C	353_A	2.134	1.00
227_V	248_A	2.131	1.00
397_M	401_R	2.128	1.00
207_V	327_A	2.122	1.00
217_K	399_N	2.108	1.00
227_V	243_M	2.100	1.00
72_H	101_S	2.100	1.00
57_M	63_K	2.068	1.00
404_D	407_L	2.040	1.00
313_E	335_E	2.040	1.00
332_T	340_L	2.035	1.00
163_N	166_I	1.990	1.00
226_R	247_G	1.982	1.00
209_I	212_K	1.976	1.00
397_M	415_R	1.974	1.00
391_F	395_Y	1.967	1.00
396_E	400_N	1.966	1.00
198_G	376_E	1.953	1.00
311_I	332_T	1.944	1.00
325_V	353_A	1.915	1.00
54_P	140_G	1.895	1.00
348_V	353_A	1.886	1.00
253_I	271_L	1.877	1.00
295_L	302_L	1.868	1.00
378_E	382_K	1.856	1.00
415_R	419_E	1.849	1.00
213_E	392_N	1.845	1.00
316_A	339_I	1.810	1.00
83_I	170_M	1.798	1.00
222_I	248_A	1.782	1.00
124_C	129_M	1.769	1.00
76_V	112_D	1.759	1.00
217_K	395_Y	1.758	1.00
312_T	315_N	1.756	1.00
70_A	101_S	1.753	1.00
192_V	419_E	1.750	1.00
217_K	391_F	1.738	1.00
79_T	118_G	1.732	1.00
304_P	328_A	1.721	1.00
272_L	276_D	1.717	1.00
252_G	297_L	1.706	1.00
228_V	252_G	1.698	1.00
311_I	319_I	1.660	1.00
256_A	275_R	1.654	1.00
351_V	410_Y	1.640	1.00
208_T	246_A	1.637	1.00
403_I	411_M	1.608	1.00
214_A	323_I	1.608	1.00
221_D	224_G	1.607	1.00
110_I	352_L	1.606	1.00
212_K	384_E	1.597	1.00
263_P	287_D	1.595	1.00
339_I	343_R	1.582	1.00
241_K	272_L	1.572	1.00
142_V	170_M	1.568	1.00
146_S	178_D	1.544	1.00
143_R	176_R	1.543	1.00
215_A	301_I	1.541	1.00
212_K	246_A	1.529	1.00
58_D	130_S	1.504	1.00
48_L	98_K	1.486	1.00
328_A	331_P	1.474	1.00
403_I	408_A	1.465	1.00
239_L	303_V	1.464	1.00
90_T	96_A	1.461	1.00
135_E	139_R	1.437	1.00
139_R	173_E	1.436	1.00
37_E	61_S	1.430	1.00
214_A	348_V	1.411	1.00
140_G	143_R	1.411	1.00
173_E	176_R	1.400	1.00
90_T	95_K	1.391	1.00
207_V	325_V	1.389	1.00
257_Y	280_T	1.388	1.00
209_I	384_E	1.382	1.00
227_V	303_V	1.377	1.00
86_H	307_I	1.376	1.00
325_V	348_V	1.373	1.00
67_G	141_Y	1.368	1.00
313_E	339_I	1.363	1.00
217_K	392_N	1.357	1.00
164_S	200_E	1.357	1.00
26_H	30_E	1.349	1.00
168_A	190_P	1.343	1.00
56_R	132_R	1.337	1.00
270_Y	284_L	1.337	1.00
334_L	337_T	1.336	1.00
124_C	137_L	1.330	1.00
317_H	339_I	1.310	1.00
385_K	389_K	1.310	1.00
25_I	29_L	1.304	1.00
251_V	299_C	1.299	1.00
235_A	327_A	1.294	1.00
74_D	79_T	1.294	1.00
209_I	380_E	1.288	1.00
67_G	133_E	1.287	1.00
389_K	393_N	1.285	1.00
286_N	289_I	1.274	1.00
218_R	346_L	1.262	1.00
279_G	283_K	1.260	1.00
218_R	322_K	1.256	1.00
239_L	305_A	1.254	1.00
72_H	105_S	1.254	1.00
220_I	322_K	1.254	1.00
339_I	342_D	1.242	1.00
143_R	177_I	1.238	1.00
215_A	222_I	1.238	1.00
48_L	94_V	1.233	1.00
228_V	297_L	1.231	1.00
352_L	394_I	1.230	1.00
44_E	66_T	1.219	1.00
68_Y	123_V	1.213	1.00
274_R	278_F	1.209	1.00
105_S	417_M	1.207	1.00
302_L	319_I	1.194	1.00
31_K	400_N	1.193	1.00
211_I	301_I	1.193	1.00
26_H	43_K	1.192	1.00
259_G	291_N	1.187	1.00
227_V	301_I	1.187	1.00
226_R	300_D	1.179	0.99
146_S	177_I	1.177	0.99
53_I	140_G	1.175	0.99
338_K	341_S	1.174	0.99
292_Q	296_E	1.173	0.99
131_F	165_Q	1.169	0.99
368_N	373_Y	1.166	0.99
111_I	359_T	1.164	0.99
391_F	405_M	1.161	0.99
403_I	407_L	1.155	0.99
211_I	303_V	1.154	0.99
311_I	340_L	1.153	0.99
212_K	216_K	1.151	0.99
392_N	396_E	1.150	0.99
397_M	412_V	1.143	0.99
208_T	243_M	1.140	0.99
313_E	317_H	1.126	0.99
25_I	28_A	1.124	0.99
51_V	145_I	1.116	0.99
129_M	137_L	1.112	0.99
226_R	263_P	1.109	0.99
228_V	251_V	1.109	0.99
259_G	289_I	1.107	0.99
290_T	293_E	1.106	0.99
227_V	250_V	1.105	0.99
243_M	250_V	1.105	0.99
87_P	125_D	1.104	0.99
70_A	94_V	1.103	0.99
323_I	346_L	1.091	0.99
251_V	261_Y	1.089	0.99
49_L	148_I	1.087	0.99
244_H	269_D	1.084	0.99
106_L	351_V	1.083	0.99
400_N	415_R	1.078	0.99
293_E	296_E	1.074	0.99
384_E	388_V	1.072	0.99
381_E	385_K	1.070	0.99
73_N	421_S	1.067	0.99
205_K	242_F	1.067	0.99
40_E	43_K	1.063	0.99
237_S	276_D	1.059	0.99
167_M	170_M	1.055	0.99
85_F	162_T	1.054	0.99
337_T	406_R	1.049	0.99
274_R	284_L	1.047	0.99
375_S	385_K	1.046	0.99
229_V	248_A	1.045	0.99
207_V	211_I	1.045	0.99
226_R	298_D	1.043	0.99
207_V	303_V	1.042	0.99
401_R	411_M	1.031	0.99
207_V	305_A	1.030	0.99
214_A	325_V	1.027	0.99
138_S	142_V	1.026	0.99
85_F	138_S	1.016	0.98
106_L	417_M	1.016	0.98
244_H	268_I	1.010	0.98
153_K	179_E	1.008	0.98
212_K	222_I	1.006	0.98
303_V	325_V	1.005	0.98
238_Y	241_K	1.003	0.98
237_S	272_L	0.989	0.98
51_V	67_G	0.986	0.98
162_T	167_M	0.985	0.98
375_S	378_E	0.983	0.98
66_T	123_V	0.980	0.98
26_H	29_L	0.979	0.98
124_C	127_R	0.970	0.98
376_E	380_E	0.969	0.98
337_T	341_S	0.965	0.98
173_E	177_I	0.965	0.98
274_R	283_K	0.964	0.98
239_L	243_M	0.964	0.98
414_V	417_M	0.962	0.98
200_E	238_Y	0.960	0.98
37_E	40_E	0.953	0.98
111_I	355_A	0.940	0.97
88_N	96_A	0.938	0.97
190_P	193_L	0.936	0.97
240_A	250_V	0.936	0.97
359_T	363_F	0.936	0.97
268_I	272_L	0.934	0.97
249_K	264_E	0.933	0.97
377_E	381_E	0.932	0.97
249_K	267_D	0.930	0.97
28_A	32_L	0.927	0.97
30_E	39_Y	0.926	0.97
207_V	239_L	0.926	0.97
380_E	384_E	0.925	0.97
243_M	303_V	0.924	0.97
281_V	288_T	0.921	0.97
75_S	417_M	0.920	0.97
86_H	160_V	0.919	0.97
23_T	27_K	0.919	0.97
83_I	141_Y	0.916	0.97
23_T	26_H	0.915	0.97
397_M	411_M	0.915	0.97
205_K	380_E	0.913	0.97
270_Y	273_D	0.906	0.97
240_A	271_L	0.905	0.97
211_I	323_I	0.904	0.97
54_P	64_I	0.904	0.97
260_L	281_V	0.903	0.97
255_D	280_T	0.903	0.97
261_Y	297_L	0.899	0.97
140_G	173_E	0.893	0.96
147_Q	179_E	0.893	0.96
232_F	253_I	0.892	0.96
255_D	275_R	0.890	0.96
147_Q	151_P	0.888	0.96
27_K	31_K	0.884	0.96
302_L	310_Q	0.883	0.96
324_V	332_T	0.877	0.96
48_L	70_A	0.876	0.96
131_F	135_E	0.874	0.96
262_D	284_L	0.872	0.96
29_L	32_L	0.867	0.96
57_M	65_F	0.859	0.96
140_G	144_A	0.859	0.96
321_A	345_I	0.857	0.96
314_E	317_H	0.855	0.96
178_D	181_N	0.845	0.95
170_M	173_E	0.844	0.95
311_I	316_A	0.842	0.95
266_L	271_L	0.837	0.95
291_N	294_L	0.836	0.95
119_K	203_T	0.834	0.95
23_T	334_L	0.831	0.95
119_K	329_N	0.830	0.95
145_I	148_I	0.825	0.95
27_K	30_E	0.824	0.95
244_H	267_D	0.820	0.94
286_N	290_T	0.817	0.94
361_S	364_E	0.813	0.94
112_D	386_M	0.812	0.94
95_K	98_K	0.811	0.94
25_I	39_Y	0.811	0.94
44_E	47_R	0.810	0.94
358_V	361_S	0.806	0.94
300_D	322_K	0.806	0.94
28_A	31_K	0.805	0.94
232_F	271_L	0.804	0.94
171_M	182_S	0.803	0.94
50_T	66_T	0.797	0.93
324_V	340_L	0.789	0.93
85_F	122_I	0.789	0.93
244_H	250_V	0.789	0.93
222_I	227_V	0.789	0.93
40_E	63_K	0.788	0.93
332_T	336_G	0.787	0.93
281_V	284_L	0.786	0.93
271_L	284_L	0.786	0.93
271_L	281_V	0.786	0.93
76_V	116_G	0.785	0.93
135_E	170_M	0.785	0.93
398_A	403_I	0.783	0.93
399_N	402_R	0.771	0.92
149_V	170_M	0.770	0.92
101_S	105_S	0.766	0.92
83_I	156_P	0.766	0.92
332_T	347_L	0.765	0.92
26_H	39_Y	0.765	0.92
311_I	350_D	0.764	0.92
42_L	106_L	0.763	0.92
169_W	172_D	0.761	0.92
296_E	315_N	0.761	0.92
210_C	394_I	0.760	0.92
120_G	141_Y	0.759	0.92
238_Y	242_F	0.757	0.92
242_F	246_A	0.756	0.92
293_E	315_N	0.756	0.92
269_D	272_L	0.755	0.92
317_H	343_R	0.755	0.92
136_R	139_R	0.754	0.91
138_S	141_Y	0.750	0.91
76_V	109_G	0.744	0.91
204_A	239_L	0.744	0.91
48_L	97_V	0.743	0.91
298_D	321_A	0.743	0.91
199_R	360_V	0.742	0.91
140_G	176_R	0.742	0.91
259_G	296_E	0.740	0.91
229_V	253_I	0.737	0.91
301_I	323_I	0.735	0.90
51_V	55_V	0.734	0.90
47_R	71_Q	0.733	0.90
270_Y	274_R	0.731	0.90
80_K	358_V	0.731	0.90
313_E	337_T	0.728	0.90
319_I	324_V	0.728	0.90
280_T	283_K	0.726	0.90
107_K	329_N	0.726	0.90
395_Y	399_N	0.724	0.90
319_I	340_L	0.723	0.90
398_A	401_R	0.720	0.89
23_T	28_A	0.719	0.89
127_R	256_A	0.718	0.89
53_I	137_L	0.718	0.89
260_L	271_L	0.717	0.89
381_E	384_E	0.716	0.89
137_L	140_G	0.716	0.89
346_L	405_M	0.715	0.89
142_V	145_I	0.710	0.89
312_T	333_T	0.709	0.89
202_A	234_N	0.708	0.89
217_K	396_E	0.707	0.89
274_R	285_F	0.703	0.88
63_K	128_D	0.701	0.88
29_L	39_Y	0.699	0.88
171_M	175_S	0.699	0.88
303_V	327_A	0.698	0.88
313_E	336_G	0.696	0.88
340_L	347_L	0.694	0.88
137_L	142_V	0.692	0.88
412_V	416_K	0.691	0.87
152_T	369_N	0.690	0.87
158_P	199_R	0.689	0.87
401_R	415_R	0.687	0.87
142_V	186_I	0.685	0.87
29_L	34_Y	0.684	0.87
63_K	129_M	0.683	0.87
232_F	268_I	0.683	0.87
134_L	278_F	0.683	0.87
324_V	336_G	0.681	0.87
347_L	350_D	0.679	0.87
158_P	234_N	0.678	0.87
77_G	150_G	0.678	0.87
161_F	235_A	0.676	0.86
205_K	384_E	0.674	0.86
127_R	275_R	0.673	0.86
355_A	359_T	0.670	0.86
139_R	172_D	0.669	0.86
57_M	77_G	0.667	0.86
274_R	279_G	0.666	0.86
413_G	417_M	0.666	0.86
414_V	418_A	0.664	0.85
210_C	325_V	0.663	0.85
71_Q	153_K	0.662	0.85
360_V	379_V	0.661	0.85
242_F	380_E	0.659	0.85
321_A	324_V	0.657	0.85
258_G	282_T	0.657	0.85
165_Q	169_W	0.655	0.85
311_I	324_V	0.655	0.85
324_V	345_I	0.655	0.85
203_T	357_G	0.655	0.85
236_G	255_D	0.652	0.84
347_L	406_R	0.652	0.84
151_P	182_S	0.651	0.84
261_Y	287_D	0.651	0.84
56_R	63_K	0.649	0.84
240_A	268_I	0.649	0.84
50_T	68_Y	0.648	0.84
252_G	259_G	0.646	0.84
30_E	33_G	0.644	0.84
24_V	103_W	0.642	0.83
366_V	372_F	0.641	0.83
393_N	396_E	0.639	0.83
165_Q	168_A	0.639	0.83
243_M	301_I	0.639	0.83
241_K	269_D	0.639	0.83
167_M	193_L	0.638	0.83
218_R	323_I	0.637	0.83
400_N	403_I	0.637	0.83
103_W	330_G	0.637	0.83
202_A	360_V	0.636	0.83
202_A	383_L	0.636	0.83
232_F	328_A	0.635	0.83
49_L	145_I	0.634	0.83
212_K	388_V	0.633	0.83
226_R	251_V	0.631	0.82
97_V	101_S	0.630	0.82
111_I	390_S	0.628	0.82
75_S	105_S	0.627	0.82
337_T	347_L	0.626	0.82
359_T	387_M	0.626	0.82
262_D	266_L	0.625	0.82
397_M	408_A	0.622	0.81
398_A	405_M	0.622	0.81
207_V	353_A	0.622	0.81
367_Q	374_W	0.621	0.81
228_V	298_D	0.621	0.81
68_Y	94_V	0.620	0.81
359_T	386_M	0.620	0.81
289_I	297_L	0.619	0.81
58_D	136_R	0.618	0.81
139_R	142_V	0.617	0.81
271_L	275_R	0.615	0.81
196_S	379_V	0.615	0.81
89_V	121_G	0.614	0.81
235_A	256_A	0.614	0.81
177_I	186_I	0.613	0.80
199_R	361_S	0.612	0.80
151_P	183_P	0.612	0.80
214_A	346_L	0.612	0.80
191_L	197_H	0.612	0.80
27_K	407_L	0.611	0.80
255_D	258_G	0.610	0.80
170_M	186_I	0.609	0.80
230_Q	310_Q	0.609	0.80
109_G	413_G	0.609	0.80
107_K	119_K	0.608	0.80
32_L	35_P	0.608	0.80
24_V	28_A	0.607	0.80
28_A	34_Y	0.607	0.80
80_K	365_W	0.607	0.80
382_K	385_K	0.607	0.80
327_A	353_A	0.607	0.80
134_L	138_S	0.604	0.80
215_A	220_I	0.604	0.80
232_F	281_V	0.604	0.80
75_S	420_A	0.603	0.79
157_A	358_V	0.603	0.79
215_A	323_I	0.600	0.79
362_Y	366_V	0.600	0.79
75_S	421_S	0.600	0.79
27_K	338_K	0.600	0.79
29_L	33_G	0.599	0.79
196_S	374_W	0.599	0.79
282_T	288_T	0.598	0.79
311_I	347_L	0.598	0.79
142_V	149_V	0.598	0.79
28_A	36_E	0.597	0.79
55_V	65_F	0.597	0.79
28_A	33_G	0.597	0.79
71_Q	79_T	0.596	0.79
228_V	259_G	0.596	0.79
292_Q	314_E	0.594	0.78
254_S	295_L	0.593	0.78
270_Y	275_R	0.592	0.78
203_T	354_S	0.592	0.78
130_S	133_E	0.592	0.78
33_G	36_E	0.591	0.78
203_T	234_N	0.591	0.78
34_Y	39_Y	0.583	0.77
259_G	297_L	0.583	0.77
388_V	392_N	0.582	0.77
273_D	276_D	0.582	0.77
174_Y	177_I	0.582	0.77
201_S	238_Y	0.581	0.77
162_T	202_A	0.581	0.77
275_R	278_F	0.580	0.77
321_A	340_L	0.579	0.77
312_T	318_N	0.579	0.77
199_R	234_N	0.578	0.77
258_G	281_V	0.577	0.76
213_E	217_K	0.577	0.76
232_F	304_P	0.575	0.76
217_K	346_L	0.573	0.76
76_V	416_K	0.572	0.76
110_I	393_N	0.572	0.76
36_E	40_E	0.571	0.76
208_T	242_F	0.571	0.76
131_F	134_L	0.569	0.75
24_V	27_K	0.569	0.75
262_D	286_N	0.567	0.75
26_H	31_K	0.566	0.75
114_P	366_V	0.565	0.75
210_C	352_L	0.565	0.75
348_V	405_M	0.564	0.75
80_K	108_C	0.564	0.75
348_V	391_F	0.563	0.75
120_G	138_S	0.563	0.75
112_D	393_N	0.562	0.75
224_G	247_G	0.562	0.75
308_E	330_G	0.562	0.75
316_A	340_L	0.561	0.74
97_V	121_G	0.560	0.74
228_V	294_L	0.559	0.74
360_V	374_W	0.559	0.74
277_S	283_K	0.559	0.74
35_P	419_E	0.559	0.74
80_K	115_Y	0.558	0.74
70_A	118_G	0.557	0.74
275_R	281_V	0.556	0.74
196_S	360_V	0.556	0.74
386_M	389_K	0.555	0.74
25_I	30_E	0.555	0.74
210_C	348_V	0.555	0.74
205_K	241_K	0.555	0.74
85_F	124_C	0.554	0.73
295_L	310_Q	0.552	0.73
383_L	387_M	0.550	0.73
395_Y	405_M	0.549	0.73
34_Y	37_E	0.547	0.73
112_D	389_K	0.546	0.72
332_T	337_T	0.544	0.72
58_D	69_R	0.542	0.72
86_H	256_A	0.541	0.72
229_V	243_M	0.541	0.72
138_S	170_M	0.541	0.72
30_E	35_P	0.540	0.72
226_R	261_Y	0.540	0.72
220_I	300_D	0.539	0.71
272_L	275_R	0.539	0.71
25_I	43_K	0.539	0.71
99_A	330_G	0.538	0.71
187_T	361_S	0.538	0.71
254_S	291_N	0.536	0.71
242_F	245_D	0.536	0.71
395_Y	398_A	0.535	0.71
38_V	41_L	0.534	0.71
152_T	371_G	0.534	0.71
259_G	294_L	0.533	0.71
207_V	235_A	0.533	0.71
251_V	297_L	0.532	0.70
157_A	234_N	0.531	0.70
288_T	291_N	0.531	0.70
83_I	120_G	0.530	0.70
214_A	391_F	0.528	0.70
239_L	327_A	0.527	0.70
194_G	364_E	0.524	0.69
23_T	30_E	0.524	0.69
158_P	360_V	0.523	0.69
196_S	367_Q	0.522	0.69
278_F	283_K	0.521	0.69
278_F	281_V	0.521	0.69
307_I	310_Q	0.519	0.69
211_I	327_A	0.519	0.69
311_I	317_H	0.519	0.69
115_Y	365_W	0.519	0.69
214_A	395_Y	0.515	0.68
397_M	400_N	0.514	0.68
119_K	157_A	0.514	0.68
263_P	285_F	0.513	0.68
317_H	342_D	0.513	0.68
25_I	414_V	0.513	0.68
312_T	332_T	0.513	0.68
234_N	360_V	0.513	0.68
143_R	146_S	0.513	0.68
138_S	166_I	0.512	0.68
333_T	337_T	0.511	0.67
111_I	386_M	0.510	0.67
208_T	211_I	0.510	0.67
305_A	327_A	0.509	0.67
56_R	62_V	0.509	0.67
119_K	354_S	0.507	0.67
27_K	35_P	0.506	0.67
198_G	379_V	0.506	0.67
241_K	268_I	0.506	0.67
396_E	399_N	0.505	0.67
142_V	173_E	0.505	0.67
102_I	106_L	0.504	0.66
57_M	61_S	0.501	0.66
274_R	281_V	0.500	0.66

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4xgiA	6	0.9625	100	0.086	Contact Map
2yfqA	5	0.9157	100	0.087	Contact Map
3r3jA	5	0.9906	100	0.09	Contact Map
4fccA	5	0.9906	100	0.093	Contact Map
2bmaA	5	0.9906	100	0.094	Contact Map
3k92A	5	0.9789	100	0.098	Contact Map
2tmgA	5	0.9508	100	0.099	Contact Map
1bgvA	5	0.993	100	0.1	Contact Map
3aoeE	3	0.9742	100	0.101	Contact Map
1v9lA	4	0.9602	100	0.101	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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