GERKA - BACSU - GREMLIN Contacts

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GERKA - Spore germination protein KA

UniProt:	P49939	Sequences: MPLFSKRKNNTDSKDKQNTDERNQEQQQEKERPVLISPSLAKNIAETKKEVGSSSDVIIREIKIGEQDHVHLAVIYISGLVDNNTIHESLIDPLVQDESIQNTHAIQQILEKTLPLGGVKAEKSWDKLFSELMLGNALIFADGHDEALICSTQGGEQRSIQEPSTQVSFRGPRQGFTESLQTNISMIRRYIKNPNLWVEKMKKGSVTNTDIALMYIQGICDEKVLKEVKQRLEKIDIDSILESGYIEQLIEDETFTTFPTMYHTERPDVVAGNLLEGRFAIIVDGTPFVLIAPALFVQFFQSVEDYYSRFDIATSIRILRVLVFFISLVAPAVYVAATTFHQEMIPTQLLVVIAAQREIVPFPAVVEALTMEVAFEILREAGVRLPRVVGSAVSIVGALVIGQAAVQAGIVSPAMVIIVALTAIASFATPAFAMAISARLIRFIFIIASAVMGFYGLILGIIMMFVHLCSLRSFGVPYMSPLAPFSSQGVKDALFRVPWWADEKRPESVSKEDKVRQGKDQRPEPAASRGMVNKDLEEGDQNGT	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	544 (480)
Sequences:	2255 (1873)
Seq/√Len:	85.5

BACSU - GERKA YFKQ YNDD GERBA SP5AF GERAA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
199_E	229_K	7.434	1.00
270_V	280_A	7.037	1.00
448_A	460_G	5.728	1.00
205_S	236_D	4.868	1.00
137_A	152_T	4.728	1.00
220_C	225_L	4.452	1.00
203_K	232_L	3.835	1.00
403_Q	407_Q	3.607	1.00
251_E	309_R	3.533	1.00
282_I	289_V	3.193	1.00
335_V	446_I	3.193	1.00
198_V	212_A	3.088	1.00
213_L	229_K	3.085	1.00
261_M	292_A	3.052	1.00
198_V	214_M	2.974	1.00
132_L	138_L	2.926	1.00
216_I	219_I	2.861	1.00
187_I	282_I	2.854	1.00
368_A	415_M	2.796	1.00
329_V	461_I	2.788	1.00
174_Q	190_Y	2.787	1.00
242_E	286_T	2.754	1.00
124_S	127_K	2.720	1.00
138_L	149_I	2.707	1.00
239_S	275_L	2.685	1.00
44_I	73_A	2.681	1.00
445_F	460_G	2.650	1.00
181_Q	184_I	2.646	1.00
122_E	149_I	2.592	1.00
206_V	218_G	2.591	1.00
222_E	512_E	2.569	1.00
469_C	479_M	2.538	1.00
264_T	270_V	2.507	1.00
187_I	214_M	2.470	1.00
139_I	150_C	2.389	1.00
206_V	513_D	2.371	1.00
216_I	274_L	2.362	1.00
128_L	138_L	2.354	1.00
195_N	218_G	2.340	1.00
121_A	146_E	2.297	1.00
38_P	43_N	2.254	1.00
197_W	217_Q	2.250	1.00
52_G	197_W	2.225	1.00
372_E	442_R	2.218	1.00
449_S	457_L	2.212	1.00
37_S	43_N	2.199	1.00
445_F	464_M	2.153	1.00
227_E	231_R	2.146	1.00
225_L	279_F	2.143	1.00
163_P	175_G	2.139	1.00
172_P	307_Y	2.135	1.00
201_M	233_E	2.108	1.00
228_V	292_A	2.090	1.00
193_N	206_V	2.079	1.00
54_S	197_W	2.060	1.00
122_E	127_K	2.056	1.00
368_A	446_I	2.044	1.00
300_F	324_F	2.043	1.00
228_V	279_F	1.919	1.00
61_E	71_H	1.878	1.00
315_S	440_L	1.875	1.00
273_N	291_I	1.869	1.00
203_K	211_I	1.858	1.00
201_M	229_K	1.857	1.00
57_V	77_I	1.855	1.00
191_I	271_A	1.841	1.00
36_I	140_F	1.835	1.00
130_S	208_N	1.826	1.00
231_R	252_D	1.820	1.00
226_K	230_Q	1.806	1.00
237_I	249_L	1.786	1.00
365_V	450_A	1.757	1.00
211_I	283_V	1.756	1.00
78_S	181_Q	1.751	1.00
455_Y	459_L	1.738	1.00
217_Q	222_E	1.725	1.00
235_I	246_I	1.725	1.00
39_S	42_K	1.725	1.00
140_F	147_A	1.710	1.00
485_F	490_V	1.709	1.00
228_V	281_I	1.701	1.00
53_S	199_E	1.677	1.00
162_E	175_G	1.673	1.00
227_E	230_Q	1.665	1.00
332_A	449_S	1.658	1.00
180_L	212_A	1.652	1.00
53_S	217_Q	1.640	1.00
201_M	213_L	1.635	1.00
136_N	153_Q	1.628	1.00
131_E	136_N	1.604	1.00
45_A	49_K	1.583	1.00
41_A	71_H	1.571	1.00
48_K	59_I	1.564	1.00
294_A	299_F	1.558	1.00
131_E	149_I	1.558	1.00
207_T	239_S	1.556	1.00
118_G	151_S	1.555	1.00
37_S	42_K	1.552	1.00
323_V	428_A	1.548	1.00
110_L	121_A	1.542	1.00
306_Y	492_D	1.538	1.00
123_K	146_E	1.535	1.00
202_K	210_D	1.524	1.00
74_V	139_I	1.520	1.00
214_M	289_V	1.509	1.00
128_L	147_A	1.494	0.99
222_E	226_K	1.493	0.99
213_L	279_F	1.484	0.99
481_P	484_P	1.482	0.99
324_F	438_A	1.482	0.99
200_K	210_D	1.465	0.99
327_S	429_T	1.427	0.99
184_I	198_V	1.418	0.99
256_T	260_T	1.413	0.99
59_I	73_A	1.409	0.99
243_S	283_V	1.409	0.99
331_P	422_T	1.406	0.99
191_I	275_L	1.405	0.99
323_V	377_I	1.390	0.99
278_R	298_Q	1.389	0.99
314_T	318_I	1.386	0.99
281_I	292_A	1.380	0.99
57_V	75_I	1.370	0.99
44_I	48_K	1.369	0.99
467_H	471_L	1.364	0.99
230_Q	234_K	1.363	0.99
202_K	208_N	1.353	0.99
86_I	137_A	1.349	0.99
318_I	322_L	1.344	0.99
82_D	154_G	1.340	0.99
363_P	366_V	1.325	0.99
229_K	233_E	1.322	0.99
238_D	505_R	1.321	0.99
51_V	133_M	1.319	0.99
79_G	184_I	1.309	0.99
120_K	127_K	1.305	0.99
270_V	289_V	1.304	0.99
207_T	275_L	1.300	0.99
86_I	152_T	1.300	0.99
261_M	290_L	1.299	0.99
336_A	457_L	1.295	0.98
44_I	61_E	1.285	0.98
238_D	516_R	1.283	0.98
79_G	185_S	1.278	0.98
40_L	140_F	1.269	0.98
375_F	423_A	1.261	0.98
406_V	417_I	1.261	0.98
162_E	173_R	1.256	0.98
374_A	400_V	1.249	0.98
81_V	86_I	1.235	0.98
365_V	447_I	1.234	0.98
256_T	467_H	1.230	0.98
376_E	443_F	1.224	0.98
180_L	282_I	1.221	0.98
176_F	187_I	1.218	0.98
322_L	373_V	1.214	0.98
220_C	279_F	1.212	0.98
168_S	302_S	1.211	0.98
444_I	448_A	1.187	0.97
138_L	147_A	1.185	0.97
164_S	173_R	1.184	0.97
40_L	142_D	1.179	0.97
42_K	45_A	1.178	0.97
59_I	75_I	1.176	0.97
224_V	279_F	1.173	0.97
260_T	309_R	1.166	0.97
160_I	174_Q	1.160	0.97
184_I	214_M	1.138	0.97
356_Q	413_P	1.134	0.96
84_N	88_E	1.129	0.96
63_K	71_H	1.122	0.96
362_F	366_V	1.115	0.96
468_L	479_M	1.115	0.96
218_G	222_E	1.110	0.96
200_K	212_A	1.105	0.96
64_I	72_L	1.091	0.96
372_E	419_V	1.087	0.96
174_Q	186_M	1.083	0.95
258_F	441_I	1.076	0.95
174_Q	189_R	1.074	0.95
446_I	450_A	1.069	0.95
136_N	151_S	1.067	0.95
134_L	192_K	1.067	0.95
40_L	73_A	1.064	0.95
230_Q	233_E	1.060	0.95
46_E	50_E	1.060	0.95
241_L	245_Y	1.058	0.95
221_D	476_V	1.056	0.95
280_A	289_V	1.045	0.94
195_N	217_Q	1.044	0.94
228_V	474_F	1.043	0.94
227_E	252_D	1.042	0.94
329_V	445_F	1.041	0.94
53_S	197_W	1.041	0.94
291_I	298_Q	1.040	0.94
55_S	199_E	1.040	0.94
167_V	387_R	1.040	0.94
279_F	292_A	1.038	0.94
177_T	183_N	1.038	0.94
206_V	216_I	1.036	0.94
169_F	304_E	1.035	0.94
364_A	415_M	1.029	0.94
219_I	505_R	1.028	0.94
60_R	119_V	1.020	0.94
300_F	321_V	1.018	0.94
251_E	260_T	1.015	0.94
36_I	128_L	1.013	0.93
299_F	434_M	1.012	0.93
36_I	147_A	1.011	0.93
296_F	479_M	1.011	0.93
425_A	428_A	1.007	0.93
372_E	443_F	1.001	0.93
79_G	181_Q	0.997	0.93
136_N	149_I	0.995	0.93
297_V	482_L	0.994	0.93
295_L	298_Q	0.994	0.93
174_Q	285_G	0.987	0.93
441_I	464_M	0.986	0.93
505_R	513_D	0.986	0.93
80_L	185_S	0.984	0.92
81_V	152_T	0.984	0.92
280_A	291_I	0.983	0.92
192_K	210_D	0.982	0.92
221_D	510_S	0.980	0.92
214_M	274_L	0.980	0.92
211_I	281_I	0.978	0.92
47_T	57_V	0.977	0.92
161_Q	175_G	0.974	0.92
332_A	445_F	0.971	0.92
372_E	439_R	0.967	0.92
38_P	145_D	0.967	0.92
61_E	73_A	0.964	0.92
369_L	446_I	0.963	0.92
73_A	140_F	0.959	0.91
155_G	179_S	0.958	0.91
270_V	291_I	0.955	0.91
191_I	216_I	0.954	0.91
62_I	91_I	0.953	0.91
201_M	232_L	0.948	0.91
213_L	228_V	0.948	0.91
317_R	492_D	0.946	0.91
382_G	390_G	0.944	0.91
189_R	284_D	0.944	0.91
248_Q	499_W	0.942	0.91
187_I	270_V	0.940	0.91
43_N	140_F	0.938	0.91
513_D	516_R	0.937	0.91
297_V	493_A	0.934	0.90
505_R	516_R	0.930	0.90
105_A	108_Q	0.923	0.90
295_L	299_F	0.923	0.90
46_E	125_W	0.919	0.90
426_S	435_A	0.918	0.90
258_F	478_Y	0.912	0.89
44_I	75_I	0.910	0.89
116_L	150_C	0.909	0.89
41_A	45_A	0.908	0.89
261_M	474_F	0.908	0.89
482_L	494_L	0.908	0.89
187_I	196_L	0.904	0.89
335_V	368_A	0.903	0.89
258_F	467_H	0.902	0.89
276_E	306_Y	0.901	0.89
372_E	379_R	0.901	0.89
338_T	364_A	0.900	0.89
258_F	464_M	0.897	0.88
120_K	131_E	0.897	0.88
226_K	229_K	0.897	0.88
315_S	376_E	0.895	0.88
56_D	188_R	0.895	0.88
231_R	250_I	0.894	0.88
159_S	177_T	0.891	0.88
108_Q	111_E	0.891	0.88
155_G	189_R	0.891	0.88
209_T	283_V	0.889	0.88
127_K	130_S	0.887	0.88
206_V	505_R	0.886	0.88
375_F	394_S	0.884	0.88
107_Q	111_E	0.883	0.88
241_L	275_L	0.879	0.87
165_T	389_V	0.879	0.87
190_Y	209_T	0.878	0.87
258_F	468_L	0.870	0.87
272_G	276_E	0.864	0.87
248_Q	496_R	0.864	0.87
497_V	502_D	0.861	0.86
225_L	228_V	0.858	0.86
340_F	451_V	0.858	0.86
130_S	202_K	0.856	0.86
163_P	265_E	0.855	0.86
176_F	270_V	0.853	0.86
393_V	423_A	0.852	0.86
385_L	427_F	0.851	0.86
128_L	140_F	0.849	0.86
166_Q	269_V	0.846	0.85
206_V	219_I	0.844	0.85
122_E	128_L	0.842	0.85
365_V	446_I	0.841	0.85
158_R	178_E	0.840	0.85
122_E	138_L	0.829	0.84
235_I	238_D	0.827	0.84
382_G	392_A	0.826	0.84
181_Q	210_D	0.825	0.84
326_I	421_L	0.823	0.84
242_E	307_Y	0.822	0.84
168_S	303_V	0.822	0.84
323_V	425_A	0.818	0.83
262_Y	298_Q	0.815	0.83
257_T	467_H	0.814	0.83
75_I	132_L	0.814	0.83
447_I	450_A	0.813	0.83
165_T	288_F	0.812	0.83
47_T	75_I	0.812	0.83
75_I	140_F	0.811	0.83
503_E	517_Q	0.810	0.83
294_A	298_Q	0.809	0.83
439_R	443_F	0.807	0.83
387_R	393_V	0.807	0.83
58_I	78_S	0.803	0.82
51_V	54_S	0.802	0.82
185_S	189_R	0.801	0.82
244_G	248_Q	0.799	0.82
221_D	511_K	0.798	0.82
125_W	140_F	0.796	0.82
207_T	241_L	0.796	0.82
511_K	514_K	0.794	0.82
47_T	51_V	0.792	0.81
242_E	245_Y	0.790	0.81
157_Q	182_T	0.789	0.81
296_F	434_M	0.788	0.81
269_V	303_V	0.788	0.81
72_L	141_A	0.787	0.81
50_E	129_F	0.786	0.81
458_I	462_I	0.785	0.81
432_F	436_I	0.784	0.81
356_Q	414_A	0.781	0.80
156_E	185_S	0.781	0.80
376_E	379_R	0.777	0.80
504_K	515_V	0.777	0.80
315_S	373_V	0.775	0.80
90_L	150_C	0.773	0.80
379_R	382_G	0.772	0.80
88_E	92_D	0.770	0.80
91_I	95_V	0.769	0.79
434_M	437_S	0.769	0.79
192_K	284_D	0.767	0.79
55_S	184_I	0.762	0.79
190_Y	285_G	0.761	0.79
504_K	507_E	0.761	0.79
392_A	398_A	0.759	0.79
128_L	132_L	0.758	0.78
47_T	73_A	0.755	0.78
262_Y	294_A	0.755	0.78
341_H	454_F	0.755	0.78
234_K	472_R	0.754	0.78
168_S	304_E	0.750	0.78
382_G	391_S	0.747	0.77
314_T	497_V	0.746	0.77
333_V	482_L	0.742	0.77
213_L	220_C	0.741	0.77
170_R	247_E	0.740	0.77
445_F	448_A	0.739	0.77
123_K	127_K	0.735	0.76
219_I	238_D	0.734	0.76
157_Q	179_S	0.734	0.76
186_M	189_R	0.734	0.76
296_F	428_A	0.733	0.76
443_F	447_I	0.732	0.76
273_N	298_Q	0.731	0.76
394_S	414_A	0.731	0.76
179_S	210_D	0.730	0.76
179_S	182_T	0.724	0.75
193_N	513_D	0.724	0.75
177_T	182_T	0.723	0.75
364_A	394_S	0.723	0.75
491_K	497_V	0.723	0.75
374_A	421_L	0.722	0.75
339_T	364_A	0.722	0.75
206_V	238_D	0.722	0.75
469_C	483_A	0.722	0.75
179_S	284_D	0.722	0.75
308_S	436_I	0.722	0.75
245_Y	272_G	0.720	0.75
184_I	212_A	0.719	0.75
441_I	444_I	0.716	0.74
72_L	139_I	0.714	0.74
362_F	410_I	0.713	0.74
445_F	449_S	0.712	0.74
251_E	254_T	0.711	0.74
272_G	301_Q	0.711	0.74
352_V	414_A	0.711	0.74
134_L	153_Q	0.711	0.74
264_T	280_A	0.710	0.74
371_M	415_M	0.709	0.74
63_K	112_K	0.709	0.74
327_S	438_A	0.708	0.74
488_Q	504_K	0.706	0.73
51_V	129_F	0.706	0.73
237_I	243_S	0.705	0.73
357_R	360_V	0.704	0.73
422_T	446_I	0.704	0.73
224_V	474_F	0.702	0.73
331_P	372_E	0.702	0.73
85_T	152_T	0.702	0.73
114_L	119_V	0.701	0.73
170_R	175_G	0.701	0.73
394_S	399_L	0.699	0.73
407_Q	413_P	0.698	0.73
222_E	225_L	0.695	0.72
36_I	46_E	0.693	0.72
359_I	420_A	0.692	0.72
299_F	439_R	0.690	0.72
377_I	394_S	0.690	0.72
299_F	397_G	0.688	0.71
58_I	76_Y	0.688	0.71
328_L	441_I	0.687	0.71
378_L	416_V	0.686	0.71
341_H	453_G	0.684	0.71
83_N	179_S	0.683	0.71
62_I	72_L	0.683	0.71
488_Q	491_K	0.682	0.71
250_I	474_F	0.681	0.71
333_V	337_A	0.681	0.71
118_G	191_I	0.681	0.71
486_S	489_G	0.680	0.71
163_P	288_F	0.678	0.70
503_E	515_V	0.677	0.70
356_Q	398_A	0.675	0.70
36_I	43_N	0.674	0.70
365_V	369_L	0.672	0.70
406_V	413_P	0.671	0.70
153_Q	181_Q	0.671	0.70
357_R	403_Q	0.670	0.69
94_L	139_I	0.670	0.69
297_V	321_V	0.670	0.69
444_I	464_M	0.669	0.69
79_G	155_G	0.668	0.69
214_M	282_I	0.668	0.69
480_S	484_P	0.666	0.69
326_I	330_A	0.665	0.69
219_I	513_D	0.664	0.69
257_T	440_L	0.663	0.69
491_K	504_K	0.661	0.68
292_A	474_F	0.661	0.68
446_I	449_S	0.660	0.68
383_V	388_V	0.660	0.68
240_I	245_Y	0.658	0.68
237_I	240_I	0.657	0.68
509_V	512_E	0.656	0.68
46_E	49_K	0.656	0.68
276_E	516_R	0.655	0.68
476_V	509_V	0.654	0.68
262_Y	299_F	0.652	0.67
218_G	512_E	0.651	0.67
232_L	281_I	0.651	0.67
405_A	411_V	0.649	0.67
419_V	443_F	0.648	0.67
294_A	429_T	0.648	0.67
299_F	431_A	0.647	0.67
74_V	137_A	0.646	0.67
180_L	284_D	0.646	0.67
379_R	441_I	0.646	0.67
39_S	44_I	0.645	0.67
368_A	419_V	0.645	0.67
296_F	324_F	0.645	0.67
480_S	489_G	0.643	0.66
174_Q	271_A	0.642	0.66
223_K	226_K	0.641	0.66
440_L	513_D	0.640	0.66
357_R	412_S	0.639	0.66
90_L	146_E	0.639	0.66
247_E	263_H	0.639	0.66
263_H	288_F	0.638	0.66
295_L	476_V	0.638	0.66
134_L	210_D	0.638	0.66
244_G	249_L	0.637	0.66
378_L	400_V	0.635	0.65
219_I	246_I	0.634	0.65
77_I	80_L	0.634	0.65
345_I	348_Q	0.633	0.65
252_D	473_S	0.632	0.65
335_V	340_F	0.630	0.65
168_S	172_P	0.630	0.65
160_I	186_M	0.628	0.64
465_F	469_C	0.628	0.64
473_S	477_P	0.628	0.64
361_P	380_E	0.627	0.64
262_Y	273_N	0.627	0.64
459_L	463_M	0.627	0.64
53_S	229_K	0.626	0.64
243_S	290_L	0.626	0.64
130_S	322_L	0.626	0.64
310_F	398_A	0.626	0.64
403_Q	420_A	0.625	0.64
361_P	404_A	0.625	0.64
224_V	476_V	0.623	0.64
350_L	389_V	0.621	0.64
324_F	429_T	0.621	0.64
48_K	75_I	0.621	0.64
259_P	299_F	0.621	0.64
54_S	57_V	0.620	0.64
131_E	203_K	0.620	0.64
121_A	148_L	0.619	0.63
327_S	426_S	0.619	0.63
107_Q	146_E	0.619	0.63
119_V	148_L	0.616	0.63
91_I	276_E	0.615	0.63
55_S	200_K	0.615	0.63
273_N	278_R	0.615	0.63
409_G	484_P	0.614	0.63
161_Q	164_S	0.614	0.63
487_S	491_K	0.614	0.63
395_I	417_I	0.614	0.63
86_I	116_L	0.609	0.62
270_V	457_L	0.607	0.62
111_E	121_A	0.607	0.62
300_F	434_M	0.606	0.62
301_Q	317_R	0.605	0.62
486_S	507_E	0.604	0.61
303_V	307_Y	0.604	0.61
262_Y	291_I	0.603	0.61
157_Q	177_T	0.602	0.61
107_Q	121_A	0.601	0.61
57_V	216_I	0.600	0.61
201_M	281_I	0.598	0.61
329_V	457_L	0.597	0.61
41_A	61_E	0.597	0.61
295_L	338_T	0.597	0.61
205_S	513_D	0.596	0.60
213_L	348_Q	0.596	0.60
141_A	504_K	0.596	0.60
446_I	452_M	0.595	0.60
382_G	388_V	0.595	0.60
364_A	399_L	0.595	0.60
250_I	261_M	0.594	0.60
410_I	417_I	0.594	0.60
361_P	453_G	0.594	0.60
457_L	460_G	0.593	0.60
496_R	499_W	0.592	0.60
425_A	485_F	0.592	0.60
432_F	435_A	0.592	0.60
308_S	433_A	0.592	0.60
394_S	472_R	0.592	0.60
333_V	457_L	0.590	0.60
294_A	374_A	0.589	0.60
170_R	243_S	0.589	0.60
331_P	418_I	0.588	0.59
47_T	140_F	0.587	0.59
36_I	125_W	0.587	0.59
205_S	222_E	0.586	0.59
78_S	83_N	0.585	0.59
488_Q	512_E	0.585	0.59
264_T	430_P	0.584	0.59
105_A	335_V	0.584	0.59
221_D	225_L	0.584	0.59
375_F	382_G	0.584	0.59
154_G	161_Q	0.583	0.59
506_P	516_R	0.582	0.59
342_Q	364_A	0.581	0.59
240_I	246_I	0.580	0.58
62_I	95_V	0.578	0.58
330_A	421_L	0.578	0.58
199_E	217_Q	0.577	0.58
396_V	423_A	0.577	0.58
333_V	454_F	0.577	0.58
254_T	309_R	0.577	0.58
385_L	389_V	0.576	0.58
509_V	514_K	0.576	0.58
400_V	468_L	0.576	0.58
372_E	446_I	0.574	0.58
388_V	394_S	0.574	0.58
40_L	43_N	0.573	0.57
175_G	288_F	0.573	0.57
312_I	353_I	0.573	0.57
235_I	249_L	0.572	0.57
206_V	275_L	0.571	0.57
278_R	301_Q	0.571	0.57
360_V	417_I	0.570	0.57
190_Y	271_A	0.570	0.57
304_E	429_T	0.569	0.57
179_S	189_R	0.568	0.57
490_V	493_A	0.567	0.57
161_Q	451_V	0.566	0.57
237_I	499_W	0.566	0.57
332_A	435_A	0.565	0.56
211_I	246_I	0.565	0.56
91_I	137_A	0.564	0.56
332_A	432_F	0.564	0.56
295_L	394_S	0.564	0.56
360_V	412_S	0.563	0.56
419_V	446_I	0.563	0.56
195_N	206_V	0.562	0.56
166_Q	323_V	0.562	0.56
187_I	271_A	0.562	0.56
231_R	473_S	0.561	0.56
106_I	110_L	0.560	0.56
242_E	246_I	0.560	0.56
461_I	464_M	0.558	0.56
227_E	234_K	0.558	0.56
35_L	124_S	0.557	0.55
156_E	182_T	0.557	0.55
45_A	48_K	0.556	0.55
255_F	501_A	0.555	0.55
187_I	389_V	0.554	0.55
123_K	145_D	0.553	0.55
177_T	504_K	0.553	0.55
80_L	189_R	0.553	0.55
51_V	197_W	0.552	0.55
412_S	453_G	0.551	0.55
262_Y	269_V	0.551	0.55
227_E	250_I	0.550	0.54
180_L	210_D	0.549	0.54
118_G	179_S	0.549	0.54
176_F	289_V	0.548	0.54
116_L	151_S	0.547	0.54
81_V	154_G	0.546	0.54
123_K	126_D	0.545	0.54
108_Q	119_V	0.544	0.54
491_K	502_D	0.543	0.54
257_T	312_I	0.543	0.54
280_A	292_A	0.543	0.54
173_R	288_F	0.542	0.53
199_E	213_L	0.542	0.53
513_D	517_Q	0.542	0.53
216_I	282_I	0.541	0.53
274_L	429_T	0.541	0.53
92_D	96_Q	0.541	0.53
327_S	331_P	0.541	0.53
323_V	508_S	0.541	0.53
190_Y	266_R	0.539	0.53
398_A	401_I	0.539	0.53
163_P	307_Y	0.538	0.53
253_E	260_T	0.538	0.53
260_T	401_I	0.537	0.53
487_S	490_V	0.537	0.53
81_V	222_E	0.537	0.53
224_V	510_S	0.536	0.53
71_H	142_D	0.536	0.53
492_D	502_D	0.534	0.52
127_K	131_E	0.534	0.52
477_P	484_P	0.533	0.52
355_A	359_I	0.532	0.52
338_T	350_L	0.532	0.52
186_M	190_Y	0.532	0.52
225_L	255_F	0.531	0.52
305_D	380_E	0.531	0.52
341_H	395_I	0.531	0.52
245_Y	499_W	0.530	0.52
173_R	265_E	0.530	0.52
50_E	125_W	0.530	0.52
334_Y	453_G	0.529	0.52
385_L	398_A	0.529	0.52
298_Q	301_Q	0.528	0.52
203_K	237_I	0.528	0.52
300_F	328_L	0.527	0.51
176_F	183_N	0.526	0.51
306_Y	491_K	0.525	0.51
50_E	194_P	0.524	0.51
357_R	453_G	0.524	0.51
347_T	403_Q	0.522	0.51
222_E	229_K	0.522	0.51
193_N	208_N	0.521	0.51
184_I	276_E	0.521	0.51
254_T	500_W	0.521	0.51
345_I	393_V	0.521	0.51
107_Q	234_K	0.521	0.51
447_I	451_V	0.521	0.51
328_L	438_A	0.520	0.50
262_Y	431_A	0.519	0.50
360_V	406_V	0.519	0.50
219_I	236_D	0.518	0.50
224_V	227_E	0.518	0.50
47_T	59_I	0.517	0.50
220_C	224_V	0.517	0.50
344_M	423_A	0.516	0.50
492_D	496_R	0.516	0.50
90_L	115_P	0.516	0.50
195_N	403_Q	0.515	0.50
90_L	137_A	0.514	0.50
276_E	279_F	0.514	0.50
46_E	129_F	0.514	0.50
312_I	440_L	0.514	0.50
344_M	362_F	0.513	0.50
35_L	45_A	0.513	0.50
174_Q	209_T	0.513	0.50
345_I	388_V	0.512	0.49
62_I	74_V	0.512	0.49
267_P	271_A	0.512	0.49
257_T	372_E	0.512	0.49
125_W	128_L	0.511	0.49
248_Q	424_I	0.511	0.49
105_A	494_L	0.511	0.49
74_V	150_C	0.510	0.49
207_T	394_S	0.509	0.49
299_F	372_E	0.509	0.49
218_G	511_K	0.508	0.49
169_F	392_A	0.508	0.49
228_V	383_V	0.508	0.49
114_L	150_C	0.507	0.49
95_V	115_P	0.507	0.49
126_D	208_N	0.507	0.49
325_F	370_T	0.506	0.49
385_L	410_I	0.506	0.49
496_R	502_D	0.506	0.49
213_L	225_L	0.506	0.49
331_P	446_I	0.506	0.49
391_S	397_G	0.505	0.48
76_Y	430_P	0.505	0.48
118_G	181_Q	0.505	0.48
219_I	225_L	0.504	0.48
300_F	353_I	0.503	0.48
247_E	308_S	0.503	0.48
203_K	225_L	0.502	0.48
126_D	130_S	0.502	0.48
100_I	103_T	0.501	0.48
298_Q	382_G	0.501	0.48
224_V	228_V	0.501	0.48
248_Q	303_V	0.501	0.48
64_I	67_Q	0.501	0.48
143_G	274_L	0.500	0.48

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3hh1A	2	0.1875	37.6	0.981	Contact Map
4g3oA	1	0.0809	14.6	0.985	Contact Map
4bemA	3	0.1452	13.4	0.985	Contact Map
3kpeA	3	0.0901	11.5	0.985	Contact Map
2xquA	3	0.1489	9	0.986	Contact Map
2xndJ	3	0.125	8.9	0.986	Contact Map
3ojaA	1	0.1268	8.8	0.986	Contact Map
1ez3A	1	0.2022	8.4	0.986	Contact Map
1t5iA	1	0.2721	8.2	0.986	Contact Map
4f4sA	3	0.136	7.2	0.987	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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