YKHA - BACSU - GREMLIN Contacts

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YKHA - Uncharacterized acyl-CoA thioester hydrolase YkhA

UniProt:	P49851	Sequences: METPETRFCKESKVVKTSRVFPLDTNNHNTLFGGKLMSYIDDIASISAARHCRRETVTASMDSVDFLKPIGQKDSVCLESYVTWVGTSSMEVFVKVIKEHLMTGERELAATSFLTFVALDSNGKPVPVPRVVPETEEEIMLHNTAVQRANERKNRKRHSQALANALGTDKPW	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	172 (147)
Sequences:	2552 (1492)
Seq/√Len:	123.0

ECOLI - YCIA
BACSU - YKHA
HALSA - Q9HR42 Q9HMQ9
SULSO - Q97WD9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
40_I	114_L	3.492	1.00
87_T	127_P	3.151	1.00
47_S	80_S	2.912	1.00
54_R	126_V	2.691	1.00
146_V	150_N	2.471	1.00
136_E	139_I	2.414	1.00
149_A	153_K	2.339	1.00
24_D	35_K	2.260	1.00
25_T	72_Q	2.256	1.00
37_M	64_V	2.226	1.00
44_A	116_F	2.225	1.00
83_T	93_F	2.188	1.00
68_K	107_E	2.184	1.00
35_K	38_S	2.183	1.00
31_L	36_L	2.151	1.00
41_D	58_T	2.020	1.00
98_K	107_E	1.982	1.00
70_I	109_A	1.974	1.00
147_Q	150_N	1.959	1.00
12_S	51_H	1.927	1.00
32_F	38_S	1.909	1.00
120_D	124_K	1.813	1.00
20_V	31_L	1.785	1.00
74_D	107_E	1.761	1.00
108_L	111_T	1.709	1.00
133_P	138_E	1.660	1.00
26_N	33_G	1.634	1.00
139_I	143_N	1.620	1.00
52_C	90_M	1.579	1.00
99_E	106_R	1.537	1.00
74_D	100_H	1.535	1.00
93_F	141_L	1.495	1.00
77_C	106_R	1.463	1.00
47_S	82_V	1.445	1.00
83_T	91_E	1.445	1.00
43_I	78_L	1.432	1.00
38_S	42_D	1.407	1.00
91_E	148_R	1.391	1.00
84_W	146_V	1.374	1.00
83_T	141_L	1.373	1.00
150_N	154_N	1.372	1.00
78_L	94_V	1.362	1.00
79_E	97_I	1.361	1.00
70_I	76_V	1.356	1.00
18_S	42_D	1.322	1.00
26_N	32_F	1.290	1.00
151_E	154_N	1.283	1.00
60_S	115_T	1.263	1.00
90_M	128_V	1.259	1.00
15_V	79_E	1.255	1.00
37_M	61_M	1.242	0.99
86_G	89_S	1.236	0.99
100_H	103_T	1.210	0.99
50_R	99_E	1.194	0.99
30_T	71_G	1.184	0.99
154_N	157_R	1.182	0.99
135_T	138_E	1.178	0.99
97_I	106_R	1.171	0.99
133_P	142_H	1.167	0.99
13_K	81_Y	1.141	0.99
84_W	142_H	1.124	0.99
85_V	133_P	1.124	0.99
51_H	131_V	1.122	0.99
13_K	79_E	1.120	0.99
70_I	96_V	1.066	0.98
24_D	39_Y	1.065	0.98
61_M	114_L	1.061	0.98
119_L	125_P	1.061	0.98
94_V	114_L	1.058	0.98
93_F	113_F	1.034	0.98
47_S	92_V	1.030	0.98
39_Y	78_L	1.028	0.98
52_C	56_T	1.019	0.98
51_H	130_R	0.994	0.97
62_D	152_R	0.981	0.97
143_N	147_Q	0.969	0.97
150_N	153_K	0.964	0.97
45_S	49_A	0.957	0.97
43_I	80_S	0.950	0.97
33_G	66_F	0.948	0.97
77_C	97_I	0.943	0.97
143_N	146_V	0.942	0.97
36_L	110_A	0.941	0.96
15_V	77_C	0.920	0.96
102_M	121_S	0.920	0.96
84_W	145_A	0.918	0.96
48_A	56_T	0.917	0.96
89_S	117_V	0.911	0.96
83_T	113_F	0.910	0.96
16_K	42_D	0.907	0.96
37_M	114_L	0.903	0.96
135_T	139_I	0.902	0.96
136_E	140_M	0.896	0.95
134_E	138_E	0.888	0.95
137_E	140_M	0.887	0.95
41_D	57_V	0.883	0.95
100_H	105_E	0.881	0.95
36_L	70_I	0.875	0.95
46_I	75_S	0.875	0.95
91_E	145_A	0.868	0.94
142_H	145_A	0.860	0.94
95_K	108_L	0.858	0.94
49_A	101_L	0.857	0.94
59_A	89_S	0.851	0.94
18_S	39_Y	0.846	0.94
51_H	90_M	0.833	0.93
59_A	117_V	0.825	0.93
79_E	95_K	0.817	0.93
97_I	108_L	0.812	0.92
140_M	144_T	0.812	0.92
71_G	74_D	0.804	0.92
59_A	65_D	0.801	0.92
147_Q	151_E	0.800	0.92
21_F	42_D	0.790	0.91
75_S	101_L	0.785	0.91
44_A	94_V	0.785	0.91
16_K	43_I	0.777	0.91
48_A	92_V	0.776	0.90
31_L	35_K	0.774	0.90
91_E	152_R	0.768	0.90
118_A	128_V	0.766	0.90
31_L	70_I	0.763	0.90
150_N	157_R	0.751	0.89
14_V	43_I	0.750	0.89
74_D	98_K	0.747	0.89
145_A	148_R	0.743	0.88
58_T	129_P	0.741	0.88
52_C	55_E	0.738	0.88
153_K	157_R	0.736	0.88
14_V	47_S	0.734	0.88
133_P	139_I	0.734	0.88
99_E	104_G	0.732	0.88
76_V	90_M	0.728	0.87
62_D	113_F	0.720	0.87
40_I	96_V	0.714	0.86
32_F	42_D	0.708	0.86
22_P	72_Q	0.707	0.86
21_F	38_S	0.705	0.86
44_A	114_L	0.700	0.85
30_T	110_A	0.692	0.85
153_K	156_K	0.692	0.85
36_L	60_S	0.690	0.85
88_S	125_P	0.686	0.84
132_V	139_I	0.683	0.84
23_L	56_T	0.681	0.84
77_C	99_E	0.676	0.83
51_H	128_V	0.666	0.82
53_R	104_G	0.661	0.82
81_Y	141_L	0.653	0.81
121_S	126_V	0.652	0.81
39_Y	76_V	0.649	0.81
67_L	108_L	0.647	0.81
57_V	89_S	0.644	0.80
29_N	73_K	0.644	0.80
81_Y	93_F	0.643	0.80
92_V	116_F	0.643	0.80
50_R	77_C	0.641	0.80
105_E	127_P	0.641	0.80
82_V	90_M	0.640	0.80
151_E	155_R	0.636	0.79
39_Y	42_D	0.636	0.79
40_I	112_S	0.636	0.79
39_Y	64_V	0.635	0.79
25_T	73_K	0.634	0.79
144_T	148_R	0.631	0.79
57_V	61_M	0.630	0.79
60_S	65_D	0.623	0.78
84_W	149_A	0.616	0.77
51_H	82_V	0.615	0.77
80_S	94_V	0.615	0.77
82_V	131_V	0.609	0.76
23_L	38_S	0.603	0.76
35_K	39_Y	0.597	0.75
50_R	89_S	0.593	0.75
122_N	125_P	0.590	0.74
120_D	125_P	0.590	0.74
116_F	133_P	0.580	0.73
41_D	86_G	0.579	0.73
17_T	20_V	0.578	0.73
14_V	46_I	0.578	0.73
40_I	78_L	0.575	0.72
83_T	95_K	0.571	0.72
12_S	92_V	0.570	0.72
144_T	147_Q	0.569	0.71
87_T	143_N	0.568	0.71
95_K	111_T	0.568	0.71
113_F	141_L	0.565	0.71
120_D	126_V	0.565	0.71
81_Y	95_K	0.564	0.71
30_T	35_K	0.563	0.71
22_P	66_F	0.562	0.71
48_A	90_M	0.560	0.70
137_E	141_L	0.559	0.70
136_E	143_N	0.557	0.70
65_D	155_R	0.554	0.69
27_N	72_Q	0.552	0.69
44_A	92_V	0.552	0.69
143_N	153_K	0.551	0.69
21_F	32_F	0.551	0.69
81_Y	138_E	0.549	0.69
27_N	32_F	0.541	0.68
93_F	108_L	0.538	0.67
42_D	149_A	0.538	0.67
91_E	149_A	0.536	0.67
57_V	119_L	0.534	0.67
95_K	113_F	0.534	0.67
68_K	98_K	0.533	0.67
41_D	89_S	0.530	0.66
93_F	111_T	0.522	0.65
102_M	137_E	0.522	0.65
38_S	55_E	0.520	0.65
45_S	58_T	0.519	0.65
61_M	110_A	0.516	0.64
46_I	50_R	0.514	0.64
62_D	148_R	0.514	0.64
119_L	124_K	0.513	0.64
140_M	147_Q	0.507	0.63
21_F	45_S	0.505	0.62
149_A	156_K	0.504	0.62
136_E	146_V	0.500	0.62

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4mobA	3	0.9302	100	0.366	Contact Map
4ncpA	5	0.9419	100	0.367	Contact Map
4zv3A	3	0.8605	100	0.421	Contact Map
1y7uA	5	0.9535	100	0.441	Contact Map
2qq2A	5	0.907	100	0.448	Contact Map
2q2bA	5	0.8198	100	0.449	Contact Map
1vpmA	5	0.9128	99.9	0.479	Contact Map
4ienA	5	0.8953	99.9	0.525	Contact Map
2v1oA	5	0.8198	99.9	0.533	Contact Map
2gvhA	3	0.7267	99.8	0.592	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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