ACCC1 - BACSU - GREMLIN Contacts

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ACCC1 - Biotin carboxylase 1

UniProt:	P49787	Sequences: MIKKLLIANRGEIAVRIIRACRELGIETVAVYSEADKDALHVQMADEAFCIGPKASKDSYLNVTNIVSVAKLTGTDAIHPGYGFLAENADFAELCEEVNVTFVGPSADAISKMGTKDVARETMKQAGVPIVPGSQGIIENVEEAVSLANEIGYPVIIKATAGGGGKGIRVARTEEELINGIKITQQEAATAFGNPGVYIEKYIEDFRHVEIQVLADNYGNTIHLGERDCSIQRRLQKLLEESPSPALDSEIREQMGDAAVKAAKAVGYTGAGTVEFIYDYNEQRYYFMEMNTRIQVEHPVTEMVTGTDLIKEQIKVASGMELSLKQEDVEFEGWAIECRINAENPSKNFMPSPGEIKMYLPPGGLGVRVDSAAYPGYSIPPYYDSMIAKVITYGKTRDEAIARMKRALSEFVIEGIETTIPFHLKLLEHETFVSGEFNTKFLETYDVMGS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	450 (392)
Sequences:	19443 (10881)
Seq/√Len:	549.6

ECOLI - ACCC PUR2 PURT PURK
BACSU - ACCC1 ACCC2 PUR2 BACD PURT PURK PYC
HALSA - Q9HQ67 Q9HPP8 Q9HRM3
SULSO - Q97VY6 Q7LXR2 PURT PURK CARB

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
149_N	174_E	3.890	1.00
145_V	178_I	3.345	1.00
68_S	72_L	3.275	1.00
4_K	27_E	3.231	1.00
173_T	176_E	3.221	1.00
257_D	261_K	3.111	1.00
140_N	143_E	3.111	1.00
132_P	201_K	2.910	1.00
93_E	111_S	2.889	1.00
62_N	65_N	2.812	1.00
279_D	284_R	2.779	1.00
396_T	399_E	2.610	1.00
153_Y	174_E	2.565	1.00
253_E	257_D	2.555	1.00
71_K	98_V	2.442	1.00
93_E	97_E	2.392	1.00
172_R	176_E	2.340	1.00
315_K	320_M	2.306	1.00
134_S	150_E	2.289	1.00
125_Q	265_A	2.274	1.00
249_S	253_E	2.261	1.00
394_G	399_E	2.190	1.00
242_S	304_V	2.102	1.00
123_M	262_A	2.095	1.00
254_Q	284_R	2.087	1.00
88_N	114_G	2.065	1.00
260_V	264_K	2.058	1.00
67_V	98_V	2.045	1.00
7_I	18_I	2.029	1.00
94_L	98_V	2.016	1.00
147_L	150_E	2.001	1.00
172_R	204_E	2.000	1.00
20_A	23_E	1.999	1.00
121_E	125_Q	1.984	1.00
118_V	121_E	1.967	1.00
174_E	178_I	1.962	1.00
248_D	251_I	1.953	1.00
395_K	399_E	1.930	1.00
63_V	94_L	1.910	1.00
258_A	285_Y	1.891	1.00
258_A	261_K	1.887	1.00
217_N	269_T	1.882	1.00
254_Q	258_A	1.841	1.00
178_I	182_K	1.831	1.00
170_V	202_Y	1.830	1.00
306_G	330_E	1.827	1.00
204_E	280_Y	1.813	1.00
311_K	315_K	1.802	1.00
338_C	404_M	1.802	1.00
312_E	323_S	1.795	1.00
355_E	379_I	1.783	1.00
5_L	103_V	1.771	1.00
67_V	71_K	1.659	1.00
147_L	151_I	1.656	1.00
145_V	174_E	1.653	1.00
111_S	118_V	1.646	1.00
185_Q	195_P	1.643	1.00
121_E	124_K	1.638	1.00
141_V	182_K	1.635	1.00
23_E	311_K	1.619	1.00
78_I	100_V	1.612	1.00
117_D	121_E	1.607	1.00
20_A	311_K	1.581	1.00
251_I	254_Q	1.577	1.00
351_P	354_G	1.575	1.00
214_L	312_E	1.565	1.00
21_C	28_T	1.560	1.00
141_V	178_I	1.557	1.00
49_F	69_V	1.554	1.00
15_V	44_M	1.546	1.00
179_N	183_I	1.545	1.00
306_G	332_E	1.544	1.00
64_T	94_L	1.532	1.00
112_K	122_T	1.524	1.00
141_V	145_V	1.516	1.00
65_N	68_S	1.514	1.00
263_A	266_V	1.505	1.00
96_E	107_A	1.499	1.00
146_S	150_E	1.495	1.00
398_D	402_A	1.490	1.00
139_E	143_E	1.487	1.00
106_S	109_A	1.485	1.00
374_Y	377_Y	1.484	1.00
254_Q	257_D	1.481	1.00
134_S	147_L	1.473	1.00
4_K	29_V	1.471	1.00
69_V	73_T	1.469	1.00
141_V	181_I	1.445	1.00
253_E	256_G	1.442	1.00
261_K	264_K	1.441	1.00
251_I	278_Y	1.438	1.00
22_R	46_D	1.436	1.00
47_E	73_T	1.435	1.00
263_A	267_G	1.416	1.00
68_S	71_K	1.405	1.00
146_S	149_N	1.399	1.00
160_T	196_G	1.394	1.00
214_L	271_A	1.393	1.00
122_T	126_A	1.390	1.00
122_T	125_Q	1.389	1.00
34_E	37_K	1.384	1.00
201_K	286_Y	1.380	1.00
203_I	288_M	1.374	1.00
280_Y	283_Q	1.374	1.00
70_A	100_V	1.369	1.00
95_C	100_V	1.366	1.00
108_D	112_K	1.364	1.00
101_T	318_S	1.362	1.00
303_M	393_Y	1.361	1.00
148_A	155_V	1.358	1.00
27_E	47_E	1.350	1.00
96_E	106_S	1.349	1.00
142_E	146_S	1.347	1.00
5_L	21_C	1.340	1.00
406_R	410_E	1.334	1.00
262_A	267_G	1.333	1.00
303_M	391_I	1.333	1.00
145_V	149_N	1.332	1.00
94_L	97_E	1.325	1.00
262_A	265_A	1.322	1.00
211_I	255_M	1.314	1.00
153_Y	173_T	1.310	1.00
137_I	196_G	1.310	1.00
49_F	73_T	1.294	1.00
93_E	108_D	1.292	1.00
120_R	200_E	1.287	1.00
148_A	153_Y	1.281	1.00
262_A	266_V	1.279	1.00
5_L	26_I	1.278	1.00
124_K	132_P	1.267	1.00
214_L	316_V	1.266	1.00
112_K	118_V	1.261	1.00
119_A	123_M	1.261	1.00
368_R	371_S	1.254	1.00
63_V	67_V	1.250	1.00
294_I	309_L	1.247	1.00
143_E	146_S	1.239	1.00
106_S	269_T	1.236	1.00
139_E	196_G	1.234	1.00
113_M	290_M	1.221	1.00
122_T	265_A	1.220	1.00
117_D	137_I	1.215	1.00
338_C	389_K	1.205	1.00
155_V	199_I	1.200	1.00
32_Y	37_K	1.199	1.00
19_R	23_E	1.193	1.00
213_V	263_A	1.192	1.00
249_S	252_R	1.189	1.00
4_K	47_E	1.188	1.00
169_R	184_T	1.187	1.00
405_K	409_S	1.182	1.00
355_E	378_S	1.180	1.00
215_A	221_T	1.168	1.00
341_N	385_S	1.166	1.00
52_G	61_L	1.164	1.00
43_Q	374_Y	1.160	1.00
95_C	102_F	1.157	1.00
70_A	78_I	1.155	1.00
179_N	182_K	1.154	1.00
138_I	147_L	1.154	1.00
250_E	254_Q	1.147	1.00
399_E	403_R	1.147	1.00
46_D	49_F	1.144	1.00
368_R	372_A	1.143	1.00
18_I	44_M	1.139	1.00
132_P	151_I	1.137	1.00
394_G	403_R	1.134	1.00
142_E	145_V	1.130	1.00
141_V	185_Q	1.122	1.00
182_K	186_Q	1.120	1.00
124_K	130_I	1.118	1.00
144_A	181_I	1.114	1.00
126_A	265_A	1.112	1.00
392_T	404_M	1.111	1.00
256_G	260_V	1.106	1.00
205_D	280_Y	1.106	1.00
402_A	406_R	1.102	1.00
78_I	95_C	1.099	1.00
181_I	197_V	1.097	1.00
175_E	179_N	1.093	1.00
307_T	312_E	1.091	1.00
373_A	377_Y	1.089	1.00
67_V	94_L	1.087	1.00
120_R	130_I	1.082	1.00
354_G	358_M	1.081	1.00
370_D	373_A	1.076	1.00
213_V	274_V	1.071	1.00
406_R	409_S	1.070	1.00
115_T	160_T	1.069	1.00
401_I	405_K	1.068	1.00
252_R	256_G	1.064	1.00
390_V	407_A	1.062	1.00
121_E	133_G	1.062	1.00
375_P	379_I	1.058	1.00
390_V	411_F	1.056	1.00
144_A	177_L	1.054	1.00
356_I	373_A	1.052	1.00
156_I	170_V	1.051	1.00
17_I	79_H	1.050	1.00
123_M	287_F	1.047	1.00
108_D	111_S	1.047	1.00
224_L	227_R	1.046	1.00
24_L	315_K	1.046	1.00
247_L	251_I	1.046	1.00
209_V	278_Y	1.043	1.00
45_A	48_A	1.042	1.00
376_G	379_I	1.040	1.00
30_A	41_H	1.036	1.00
218_Y	321_E	1.033	1.00
403_R	406_R	1.032	1.00
93_E	107_A	1.032	1.00
29_V	33_S	1.031	1.00
149_N	178_I	1.030	1.00
96_E	269_T	1.014	1.00
334_W	395_K	1.012	1.00
129_P	284_R	1.012	1.00
211_I	256_G	1.009	1.00
339_R	342_A	1.006	1.00
26_I	318_S	1.005	1.00
373_A	376_G	1.003	1.00
361_P	411_F	1.000	1.00
248_D	283_Q	0.998	1.00
176_E	179_N	0.997	1.00
101_T	217_N	0.993	1.00
92_A	102_F	0.988	1.00
63_V	91_F	0.983	1.00
124_K	134_S	0.982	1.00
117_D	160_T	0.979	1.00
67_V	97_E	0.974	1.00
250_E	253_E	0.974	1.00
151_I	155_V	0.966	1.00
37_K	40_L	0.966	1.00
138_I	144_A	0.961	1.00
363_G	366_G	0.959	1.00
5_L	314_I	0.957	1.00
157_I	197_V	0.957	1.00
66_I	95_C	0.946	1.00
347_K	350_M	0.942	1.00
175_E	178_I	0.939	1.00
156_I	202_Y	0.937	1.00
64_T	68_S	0.937	1.00
21_C	314_I	0.936	1.00
264_K	267_G	0.934	1.00
280_Y	284_R	0.934	1.00
169_R	180_G	0.933	1.00
341_N	408_L	0.932	1.00
129_P	258_A	0.932	1.00
220_N	223_H	0.930	1.00
134_S	138_I	0.929	1.00
4_K	76_D	0.928	1.00
407_A	410_E	0.923	1.00
69_V	75_T	0.917	1.00
312_E	315_K	0.914	1.00
21_C	79_H	0.912	1.00
246_A	278_Y	0.912	1.00
224_L	228_D	0.910	1.00
26_I	29_V	0.910	1.00
375_P	378_S	0.908	1.00
161_A	194_N	0.906	1.00
204_E	279_D	0.904	1.00
314_I	318_S	0.904	1.00
128_V	287_F	0.901	1.00
278_Y	285_Y	0.900	1.00
6_L	70_A	0.896	1.00
79_H	313_Q	0.895	1.00
24_L	308_D	0.895	1.00
201_K	284_R	0.893	1.00
358_M	362_P	0.893	1.00
124_K	133_G	0.884	1.00
181_I	185_Q	0.882	1.00
255_M	258_A	0.878	1.00
18_I	45_A	0.876	1.00
24_L	311_K	0.875	1.00
336_I	400_A	0.873	1.00
30_A	45_A	0.868	1.00
138_I	143_E	0.864	1.00
222_I	324_L	0.862	1.00
169_R	183_I	0.862	1.00
225_G	228_D	0.861	1.00
31_V	51_I	0.858	1.00
32_Y	48_A	0.857	1.00
302_E	391_I	0.857	1.00
148_A	181_I	0.853	1.00
145_V	182_K	0.853	1.00
106_S	267_G	0.852	1.00
25_G	311_K	0.851	1.00
95_C	98_V	0.849	1.00
153_Y	177_L	0.847	1.00
91_F	95_C	0.845	1.00
274_V	290_M	0.844	1.00
369_V	388_A	0.836	1.00
34_E	38_D	0.834	1.00
30_A	34_E	0.832	1.00
117_D	196_G	0.830	1.00
394_G	400_A	0.829	1.00
203_I	286_Y	0.827	1.00
7_I	21_C	0.826	1.00
255_M	285_Y	0.825	1.00
103_V	314_I	0.825	1.00
132_P	150_E	0.824	1.00
6_L	31_V	0.823	1.00
334_W	393_Y	0.823	1.00
18_I	28_T	0.822	1.00
220_N	264_K	0.820	1.00
171_A	180_G	0.815	1.00
226_E	244_S	0.815	1.00
143_E	147_L	0.814	1.00
358_M	412_V	0.813	1.00
332_E	393_Y	0.813	1.00
84_F	89_A	0.813	1.00
215_A	263_A	0.808	1.00
221_T	260_V	0.808	1.00
226_E	252_R	0.807	1.00
32_Y	35_A	0.805	1.00
299_P	302_E	0.804	1.00
211_I	259_A	0.804	1.00
148_A	152_G	0.801	1.00
157_I	181_I	0.800	1.00
320_M	324_L	0.792	1.00
254_Q	285_Y	0.791	1.00
392_T	407_A	0.790	1.00
157_I	180_G	0.787	1.00
219_G	264_K	0.781	1.00
115_T	196_G	0.781	1.00
144_A	199_I	0.779	1.00
109_A	269_T	0.777	1.00
29_V	34_E	0.777	1.00
325_K	328_D	0.776	1.00
8_A	91_F	0.775	1.00
70_A	95_C	0.768	1.00
214_L	223_H	0.766	1.00
28_T	32_Y	0.763	1.00
218_Y	267_G	0.761	1.00
358_M	375_P	0.760	1.00
399_E	402_A	0.755	1.00
148_A	177_L	0.754	1.00
261_K	265_A	0.752	1.00
259_A	263_A	0.748	1.00
22_R	28_T	0.748	1.00
33_S	37_K	0.748	1.00
134_S	143_E	0.747	1.00
357_K	412_V	0.745	1.00
367_V	392_T	0.744	1.00
4_K	73_T	0.743	1.00
15_V	41_H	0.743	1.00
259_A	276_F	0.743	1.00
215_A	264_K	0.737	1.00
263_A	272_G	0.735	1.00
141_V	177_L	0.734	1.00
183_I	186_Q	0.733	1.00
90_D	111_S	0.732	1.00
283_Q	286_Y	0.730	1.00
30_A	33_S	0.729	1.00
367_V	407_A	0.728	1.00
156_I	168_I	0.727	1.00
356_I	359_Y	0.727	1.00
355_E	358_M	0.727	1.00
93_E	96_E	0.726	1.00
369_V	372_A	0.725	1.00
240_E	300_V	0.723	1.00
338_C	341_N	0.722	1.00
315_K	318_S	0.722	1.00
223_H	256_G	0.721	1.00
242_S	300_V	0.721	1.00
51_I	69_V	0.720	1.00
155_V	171_A	0.720	1.00
120_R	131_V	0.716	1.00
339_R	343_E	0.715	1.00
358_M	361_P	0.715	1.00
359_Y	380_P	0.714	1.00
27_E	46_D	0.714	1.00
4_K	74_G	0.713	1.00
113_M	266_V	0.712	1.00
331_F	334_W	0.712	1.00
277_I	288_M	0.711	1.00
92_A	96_E	0.710	1.00
71_K	97_E	0.709	1.00
45_A	49_F	0.709	1.00
212_Q	271_A	0.708	1.00
337_E	342_A	0.705	1.00
90_D	94_L	0.703	1.00
241_E	397_R	0.701	1.00
257_D	260_V	0.700	1.00
215_A	269_T	0.696	1.00
28_T	33_S	0.695	1.00
4_K	28_T	0.690	1.00
157_I	171_A	0.687	1.00
313_Q	317_A	0.685	1.00
261_K	266_V	0.683	1.00
227_R	241_E	0.682	1.00
117_D	198_Y	0.681	1.00
343_E	354_G	0.679	1.00
192_F	195_P	0.676	1.00
207_R	278_Y	0.674	1.00
96_E	108_D	0.673	1.00
29_V	32_Y	0.672	1.00
96_E	102_F	0.671	1.00
362_P	366_G	0.669	1.00
269_T	316_V	0.667	1.00
247_L	252_R	0.667	1.00
279_D	286_Y	0.665	1.00
107_A	111_S	0.664	1.00
21_C	26_I	0.664	1.00
359_Y	362_P	0.664	1.00
19_R	369_V	0.663	1.00
239_L	338_C	0.661	1.00
149_N	153_Y	0.661	1.00
151_I	201_K	0.661	1.00
24_L	314_I	0.661	1.00
209_V	244_S	0.660	1.00
213_V	259_A	0.659	1.00
131_V	203_I	0.659	1.00
409_S	412_V	0.658	1.00
215_A	219_G	0.658	1.00
372_A	377_Y	0.658	1.00
218_Y	319_G	0.658	1.00
382_Y	413_I	0.657	1.00
67_V	100_V	0.655	1.00
115_T	161_A	0.654	1.00
35_A	38_D	0.652	1.00
68_S	98_V	0.652	1.00
304_V	331_F	0.649	1.00
337_E	401_I	0.648	1.00
360_L	412_V	0.648	1.00
213_V	272_G	0.647	1.00
203_I	279_D	0.647	1.00
300_V	303_M	0.647	1.00
92_A	95_C	0.644	1.00
28_T	47_E	0.644	1.00
61_L	91_F	0.643	1.00
171_A	176_E	0.643	1.00
121_E	137_I	0.641	1.00
324_L	328_D	0.637	1.00
225_G	304_V	0.637	1.00
362_P	407_A	0.635	1.00
101_T	269_T	0.634	1.00
25_G	314_I	0.634	1.00
228_D	244_S	0.634	1.00
392_T	400_A	0.633	1.00
31_V	66_I	0.631	1.00
397_R	401_I	0.631	1.00
259_A	274_V	0.630	1.00
330_E	333_G	0.624	1.00
336_I	401_I	0.624	1.00
20_A	24_L	0.624	1.00
359_Y	411_F	0.623	1.00
349_F	352_S	0.623	1.00
65_N	69_V	0.622	1.00
157_I	199_I	0.622	1.00
180_G	184_T	0.619	1.00
327_E	330_E	0.618	1.00
207_R	246_A	0.617	1.00
312_E	324_L	0.617	1.00
337_E	341_N	0.617	1.00
8_A	66_I	0.616	1.00
255_M	259_A	0.614	1.00
305_T	331_F	0.614	1.00
30_A	35_A	0.614	1.00
352_S	356_I	0.612	1.00
206_F	280_Y	0.612	1.00
34_E	53_P	0.607	1.00
6_L	75_T	0.607	1.00
185_Q	197_V	0.607	1.00
148_A	151_I	0.604	1.00
5_L	310_I	0.604	1.00
356_I	361_P	0.603	1.00
268_Y	272_G	0.602	1.00
184_T	197_V	0.601	1.00
109_A	267_G	0.601	1.00
118_V	122_T	0.600	1.00
388_A	411_F	0.600	1.00
244_S	247_L	0.599	1.00
268_Y	292_T	0.598	1.00
115_T	118_V	0.598	1.00
363_G	367_V	0.596	1.00
141_V	144_A	0.595	1.00
344_N	347_K	0.594	1.00
160_T	198_Y	0.594	1.00
83_G	86_A	0.594	1.00
152_G	174_E	0.594	1.00
369_V	411_F	0.594	1.00
336_I	341_N	0.593	1.00
171_A	177_L	0.592	1.00
74_G	98_V	0.592	1.00
237_K	240_E	0.591	1.00
148_A	199_I	0.588	1.00
172_R	202_Y	0.588	1.00
258_A	262_A	0.585	1.00
398_D	401_I	0.585	1.00
131_V	288_M	0.583	1.00
404_M	408_L	0.583	1.00
112_K	125_Q	0.582	0.99
216_D	219_G	0.582	0.99
328_D	331_F	0.581	0.99
34_E	39_A	0.581	0.99
223_H	260_V	0.580	0.99
216_D	322_L	0.580	0.99
225_G	331_F	0.579	0.99
180_G	183_I	0.579	0.99
309_L	313_Q	0.579	0.99
157_I	177_L	0.577	0.99
15_V	40_L	0.577	0.99
258_A	276_F	0.574	0.99
327_E	331_F	0.574	0.99
13_I	294_I	0.573	0.99
360_L	375_P	0.573	0.99
219_G	222_I	0.572	0.99
232_Q	237_K	0.571	0.99
315_K	323_S	0.570	0.99
31_V	38_D	0.570	0.99
84_F	88_N	0.569	0.99
66_I	78_I	0.567	0.99
106_S	217_N	0.566	0.99
216_D	220_N	0.565	0.99
31_V	34_E	0.565	0.99
25_G	29_V	0.564	0.99
36_D	39_A	0.563	0.99
225_G	329_V	0.562	0.99
40_L	374_Y	0.562	0.99
365_L	403_R	0.562	0.99
138_I	199_I	0.560	0.99
299_P	337_E	0.560	0.99
314_I	317_A	0.559	0.99
134_S	137_I	0.558	0.99
324_L	329_V	0.558	0.99
248_D	278_Y	0.557	0.99
215_A	220_N	0.556	0.99
355_E	359_Y	0.555	0.99
350_M	353_P	0.555	0.99
33_S	36_D	0.555	0.99
364_G	403_R	0.554	0.99
89_A	111_S	0.552	0.99
70_A	75_T	0.551	0.99
78_I	102_F	0.549	0.99
112_K	292_T	0.549	0.99
155_V	201_K	0.548	0.99
340_I	343_E	0.547	0.99
122_T	266_V	0.546	0.99
289_E	293_R	0.545	0.99
101_T	314_I	0.545	0.99
402_A	405_K	0.544	0.99
116_K	158_K	0.544	0.99
44_M	48_A	0.544	0.99
166_K	191_A	0.541	0.99
256_G	259_A	0.541	0.99
123_M	128_V	0.540	0.99
140_N	181_I	0.539	0.99
168_I	235_L	0.538	0.99
251_I	283_Q	0.537	0.99
27_E	30_A	0.536	0.99
366_G	403_R	0.536	0.99
254_Q	261_K	0.536	0.99
31_V	35_A	0.535	0.99
373_A	379_I	0.534	0.99
250_E	283_Q	0.531	0.99
279_D	283_Q	0.530	0.99
176_E	180_G	0.529	0.99
120_R	124_K	0.528	0.99
209_V	247_L	0.528	0.99
83_G	164_G	0.528	0.99
25_G	28_T	0.526	0.99
386_M	391_I	0.526	0.99
386_M	389_K	0.526	0.99
316_V	322_L	0.523	0.99
224_L	304_V	0.523	0.99
219_G	223_H	0.521	0.99
77_A	317_A	0.521	0.99
119_A	287_F	0.521	0.99
361_P	410_E	0.519	0.99
71_K	100_V	0.519	0.99
35_A	39_A	0.518	0.99
147_L	199_I	0.517	0.99
153_Y	172_R	0.517	0.99
30_A	73_T	0.515	0.99
262_A	290_M	0.513	0.99
63_V	88_N	0.512	0.99
142_E	178_I	0.509	0.99
80_P	102_F	0.509	0.99
224_L	305_T	0.508	0.99
76_D	101_T	0.508	0.99
29_V	47_E	0.506	0.99
271_A	294_I	0.504	0.99
144_A	147_L	0.503	0.99
225_G	229_C	0.501	0.99
333_G	393_Y	0.501	0.99
170_V	235_L	0.500	0.98
207_R	244_S	0.500	0.98
307_T	323_S	0.500	0.98

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3n6rA	1	0.84	100	0.31	Contact Map
3va7A	1	0.8356	100	0.316	Contact Map
3u9tA	3	0.9667	100	0.317	Contact Map
2qf7A	4	0.8933	100	0.322	Contact Map
4qshA	4	0.8578	100	0.325	Contact Map
4rcnA	6	0.9089	100	0.327	Contact Map
3hblA	4	0.9956	100	0.336	Contact Map
3jrxA	1	0.9267	100	0.339	Contact Map
4mv4A	2	0.9733	100	0.34	Contact Map
2vpqA	2	0.9911	100	0.344	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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