SP3AH - BACSU - GREMLIN Contacts

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SP3AH - Stage III sporulation protein AH

UniProt:	P49785	Sequences: MLKKQTVWLLTMLSLVVVLSVYYIMSPESKNAVQMQSEKSASDSGEVATEKAPAKQDTKEKSGTETEKGKEDGTKGTKDSSADKETSAEASEKGTVVTETADDDLFTTYRLDLEDARSKEREELNAIVSSDDATAKEKSEAYDKMTALSEVEGTEKQLETLIKTQGYEDALVNAEGDKINITVKSDKHSKSKATAIIDLVAKEIKTMKDVAVTFEPSK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	218 (200)
Sequences:	283 (263)
Seq/√Len:	18.6

BACSU - SP3AH

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
117_R	155_E	4.244	1.00
6_T	9_L	3.211	0.99
92_E	95_T	3.162	0.99
154_T	205_K	2.827	0.98
183_V	196_I	2.773	0.98
4_K	10_L	2.580	0.97
134_T	137_E	2.569	0.97
93_K	98_T	2.426	0.96
95_T	98_T	2.327	0.95
93_K	96_V	2.221	0.93
20_S	23_Y	2.208	0.93
162_I	181_I	2.184	0.93
79_D	136_K	2.119	0.92
91_S	94_G	2.114	0.92
181_I	200_V	2.101	0.91
5_Q	12_M	2.086	0.91
117_R	172_V	2.068	0.91
5_Q	9_L	2.005	0.89
92_E	96_V	1.998	0.89
151_V	174_A	1.938	0.87
4_K	110_R	1.883	0.86
176_G	192_K	1.850	0.85
5_Q	20_S	1.845	0.85
174_A	179_I	1.792	0.83
16_V	25_M	1.767	0.82
5_Q	14_S	1.722	0.80
5_Q	23_Y	1.720	0.80
9_L	23_Y	1.706	0.80
153_G	182_T	1.701	0.79
12_M	19_L	1.699	0.79
5_Q	19_L	1.685	0.79
71_E	76_G	1.679	0.78
6_T	20_S	1.638	0.77
128_V	141_A	1.627	0.76
59_K	79_D	1.625	0.76
73_G	81_S	1.589	0.74
17_V	20_S	1.583	0.74
121_R	172_V	1.579	0.74
179_I	208_K	1.553	0.73
113_L	159_E	1.537	0.72
90_A	93_K	1.535	0.72
72_D	77_T	1.533	0.72
25_M	28_E	1.530	0.72
12_M	23_Y	1.502	0.70
86_T	89_E	1.497	0.70
131_D	134_T	1.472	0.69
124_L	198_D	1.472	0.69
56_Q	72_D	1.465	0.68
6_T	19_L	1.456	0.68
155_E	204_I	1.452	0.67
104_D	108_T	1.421	0.66
59_K	68_K	1.393	0.64
195_A	202_K	1.393	0.64
169_D	210_V	1.384	0.64
27_P	118_S	1.370	0.63
74_T	84_K	1.365	0.62
193_A	197_I	1.364	0.62
141_A	172_V	1.353	0.62
6_T	18_V	1.351	0.62
74_T	77_T	1.349	0.62
125_N	129_S	1.332	0.61
114_E	162_I	1.332	0.61
14_S	20_S	1.324	0.60
38_E	41_A	1.324	0.60
176_G	208_K	1.323	0.60
68_K	71_E	1.317	0.60
6_T	23_Y	1.309	0.59
61_K	79_D	1.308	0.59
21_V	25_M	1.302	0.59
63_G	67_E	1.301	0.59
9_L	12_M	1.291	0.58
160_T	163_K	1.283	0.58
20_S	24_I	1.279	0.57
183_V	188_H	1.276	0.57
124_L	154_T	1.241	0.55
106_F	193_A	1.227	0.54
92_E	98_T	1.213	0.53
135_A	146_T	1.211	0.53
14_S	18_V	1.182	0.51
120_E	124_L	1.181	0.51
6_T	12_M	1.181	0.51
125_N	162_I	1.181	0.51
110_R	169_D	1.178	0.51
64_T	80_S	1.167	0.50
9_L	210_V	1.135	0.48
69_G	72_D	1.125	0.48
16_V	21_V	1.124	0.48
41_A	79_D	1.119	0.47
66_T	70_K	1.113	0.47
58_T	72_D	1.104	0.46
12_M	20_S	1.097	0.46
122_E	177_D	1.092	0.46
163_K	169_D	1.083	0.45
10_L	130_S	1.075	0.45
64_T	68_K	1.055	0.43
9_L	113_L	1.051	0.43
40_S	73_G	1.046	0.43
150_E	183_V	1.044	0.43
133_A	142_Y	1.040	0.42
4_K	7_V	1.038	0.42
150_E	177_D	1.034	0.42
97_V	100_T	1.032	0.42
10_L	16_V	1.026	0.42
57_D	75_K	1.014	0.41
59_K	64_T	1.003	0.40
105_L	210_V	0.991	0.40
167_Y	193_A	0.986	0.39
5_Q	24_I	0.985	0.39
13_L	196_I	0.983	0.39
72_D	75_K	0.979	0.39
155_E	172_V	0.977	0.39
17_V	26_S	0.975	0.39
58_T	68_K	0.971	0.38
153_G	197_I	0.964	0.38
58_T	80_S	0.963	0.38
10_L	21_V	0.963	0.38
3_K	26_S	0.962	0.38
41_A	70_K	0.961	0.38
21_V	24_I	0.961	0.38
60_E	67_E	0.954	0.37
16_V	162_I	0.936	0.36
21_V	27_P	0.932	0.36
63_G	66_T	0.929	0.36
137_E	181_I	0.921	0.35
43_D	55_K	0.911	0.35
18_V	197_I	0.904	0.34
58_T	63_G	0.897	0.34
180_N	203_E	0.885	0.33
14_S	21_V	0.882	0.33
76_G	79_D	0.880	0.33
11_T	18_V	0.879	0.33
71_E	75_K	0.878	0.33
60_E	70_K	0.877	0.33
74_T	78_K	0.873	0.33
114_E	118_S	0.871	0.33
34_Q	75_K	0.866	0.32
91_S	95_T	0.865	0.32
73_G	79_D	0.851	0.32
16_V	24_I	0.840	0.31
74_T	85_E	0.839	0.31
168_E	186_D	0.837	0.31
9_L	20_S	0.833	0.31
21_V	110_R	0.817	0.30
21_V	202_K	0.816	0.30
178_K	205_K	0.816	0.30
115_D	203_E	0.813	0.30
28_E	170_A	0.805	0.29
63_G	68_K	0.804	0.29
188_H	192_K	0.804	0.29
138_K	194_T	0.803	0.29
6_T	14_S	0.803	0.29
62_S	81_S	0.794	0.29
14_S	193_A	0.782	0.28
57_D	65_E	0.782	0.28
71_E	205_K	0.780	0.28
67_E	70_K	0.778	0.28
180_N	195_A	0.777	0.28
76_G	86_T	0.776	0.28
197_I	203_E	0.773	0.27
73_G	80_S	0.772	0.27
63_G	72_D	0.771	0.27
10_L	25_M	0.771	0.27
13_L	172_V	0.771	0.27
19_L	23_Y	0.770	0.27
25_M	188_H	0.770	0.27
120_E	123_E	0.763	0.27
155_E	203_E	0.763	0.27
202_K	212_V	0.759	0.27
60_E	86_T	0.756	0.27
81_S	84_K	0.756	0.27
145_M	191_S	0.756	0.27
37_S	153_G	0.751	0.26
95_T	205_K	0.751	0.26
20_S	109_Y	0.750	0.26
17_V	24_I	0.750	0.26
124_L	153_G	0.747	0.26
117_R	166_G	0.745	0.26
11_T	121_R	0.744	0.26
83_D	130_S	0.743	0.26
10_L	13_L	0.742	0.26
57_D	61_K	0.742	0.26
84_K	87_S	0.740	0.26
36_Q	186_D	0.739	0.26
183_V	192_K	0.737	0.26
9_L	24_I	0.730	0.25
38_E	55_K	0.729	0.25
179_I	209_D	0.723	0.25
150_E	154_T	0.722	0.25
193_A	212_V	0.720	0.25
110_R	163_K	0.716	0.25
72_D	78_K	0.716	0.25
97_V	102_D	0.713	0.25
11_T	14_S	0.704	0.24
94_G	98_T	0.703	0.24
5_Q	197_I	0.699	0.24
57_D	68_K	0.699	0.24
127_I	141_A	0.697	0.24
59_K	63_G	0.696	0.24
13_L	18_V	0.689	0.24
157_Q	203_E	0.685	0.23
185_S	192_K	0.684	0.23
80_S	168_E	0.680	0.23
57_D	76_G	0.679	0.23
20_S	199_L	0.676	0.23
96_V	189_S	0.671	0.23
147_A	150_E	0.670	0.23
138_K	155_E	0.668	0.23
19_L	24_I	0.663	0.22
24_I	188_H	0.659	0.22
197_I	212_V	0.656	0.22
36_Q	77_T	0.656	0.22
17_V	115_D	0.654	0.22
110_R	155_E	0.652	0.22
121_R	145_M	0.646	0.22
159_E	172_V	0.642	0.21
36_Q	81_S	0.637	0.21
71_E	175_E	0.636	0.21
55_K	69_G	0.635	0.21
69_G	147_A	0.634	0.21
138_K	166_G	0.634	0.21
166_G	179_I	0.629	0.21
121_R	127_I	0.629	0.21
159_E	182_T	0.628	0.21
115_D	190_K	0.627	0.21
78_K	81_S	0.626	0.21
151_V	185_S	0.623	0.21
96_V	99_E	0.617	0.20
61_K	68_K	0.617	0.20
5_Q	18_V	0.616	0.20
115_D	149_S	0.615	0.20
57_D	176_G	0.614	0.20
12_M	205_K	0.612	0.20
10_L	14_S	0.611	0.20
61_K	64_T	0.610	0.20
14_S	25_M	0.606	0.20
145_M	160_T	0.603	0.20
68_K	87_S	0.602	0.20
4_K	22_Y	0.602	0.20
110_R	161_L	0.601	0.20
181_I	206_T	0.600	0.20
88_A	91_S	0.595	0.20
99_E	110_R	0.594	0.20
59_K	70_K	0.593	0.19
124_L	204_I	0.592	0.19
79_D	87_S	0.588	0.19
56_Q	62_S	0.586	0.19
106_F	162_I	0.580	0.19
37_S	75_K	0.578	0.19
72_D	85_E	0.576	0.19
149_S	213_T	0.575	0.19
11_T	158_L	0.574	0.19
11_T	130_S	0.571	0.19
86_T	132_D	0.569	0.19
150_E	205_K	0.568	0.19
61_K	71_E	0.565	0.18
105_L	212_V	0.565	0.18
69_G	73_G	0.565	0.18
121_R	180_N	0.561	0.18
106_F	110_R	0.560	0.18
118_S	192_K	0.558	0.18
7_V	19_L	0.555	0.18
14_S	27_P	0.555	0.18
180_N	202_K	0.553	0.18
61_K	168_E	0.549	0.18
7_V	71_E	0.547	0.18
154_T	173_N	0.546	0.18
76_G	192_K	0.545	0.18
41_A	81_S	0.543	0.18
23_Y	196_I	0.542	0.18
33_V	39_K	0.541	0.18
115_D	173_N	0.541	0.18
93_K	97_V	0.541	0.18
35_M	80_S	0.540	0.17
139_S	175_E	0.535	0.17
3_K	137_E	0.535	0.17
19_L	25_M	0.535	0.17
106_F	188_H	0.534	0.17
66_T	85_E	0.531	0.17
115_D	158_L	0.530	0.17
106_F	169_D	0.529	0.17
6_T	161_L	0.524	0.17
58_T	73_G	0.523	0.17
110_R	194_T	0.521	0.17
61_K	65_E	0.519	0.17
15_L	126_A	0.519	0.17
36_Q	63_G	0.515	0.17
157_Q	198_D	0.515	0.17
102_D	188_H	0.513	0.17
124_L	155_E	0.513	0.17
68_K	81_S	0.512	0.16
75_K	181_I	0.512	0.16
92_E	97_V	0.512	0.16
60_E	78_K	0.512	0.16
131_D	212_V	0.511	0.16
61_K	67_E	0.508	0.16
22_Y	212_V	0.507	0.16
56_Q	61_K	0.506	0.16
7_V	128_V	0.502	0.16
166_G	195_A	0.501	0.16
125_N	156_K	0.500	0.16

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3tufA	2	0.5275	100	0.402	Contact Map
4g1iA	1	0.4266	43.2	0.938	Contact Map
2wssS	1	0.5596	36	0.941	Contact Map
3j6dA	3	0.5459	24.8	0.946	Contact Map
1xs3A	1	0.3211	17.6	0.949	Contact Map
1jb0X	1	0.1193	10.8	0.954	Contact Map
3tr3A	2	0.3119	9.7	0.955	Contact Map
3j7aR	1	0.2798	9.3	0.955	Contact Map
2mcqA	1	0.3028	9.3	0.955	Contact Map
3zg1A	2	0.4908	8.7	0.956	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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