GREMLIN Database
YQGI - Probable ABC transporter permease protein YqgI
UniProt: P46340 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 294 (249)
Sequences: 71388 (47328)
Seq/√Len: 2999.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
176_H180_T4.0171.00
24_I28_L3.3431.00
63_F67_Y3.2571.00
153_E157_R3.0321.00
168_L177_T3.0231.00
60_D63_F2.6091.00
89_E164_K2.5841.00
173_S176_H2.5441.00
167_S177_T2.5041.00
47_T50_S2.4781.00
75_I141_T2.4741.00
61_Q245_H2.4711.00
164_K182_L2.4671.00
155_A189_S2.4281.00
71_I137_A2.4071.00
59_R63_F2.3311.00
73_M194_A2.2921.00
175_W179_K2.2781.00
174_R177_T2.2741.00
34_I38_S2.2671.00
240_E248_N2.2111.00
152_T190_I2.1731.00
47_T51_A2.1201.00
50_S54_A2.0771.00
172_V176_H2.0291.00
176_H179_K1.9911.00
81_V178_V1.9751.00
148_M193_G1.9431.00
156_I186_A1.9291.00
163_L185_S1.9281.00
88_A157_R1.9171.00
67_Y133_I1.8541.00
92_P96_V1.8061.00
167_S172_V1.8061.00
81_V186_A1.7611.00
60_D64_N1.7361.00
164_K177_T1.7191.00
101_R153_E1.7091.00
168_L174_R1.6921.00
80_G148_M1.6801.00
69_L198_S1.6801.00
67_Y71_I1.6681.00
81_V152_T1.6671.00
77_I194_A1.6331.00
164_K168_L1.6321.00
72_T201_V1.6261.00
258_A261_I1.6161.00
83_G149_V1.6071.00
36_G49_S1.6001.00
51_A261_I1.5971.00
87_M149_V1.5951.00
30_S34_I1.5751.00
31_Y35_N1.5441.00
27_G31_Y1.5401.00
278_L282_W1.5291.00
92_P97_T1.5101.00
161_K164_K1.4831.00
245_H249_V1.4371.00
84_G152_T1.4001.00
31_Y34_I1.3991.00
205_A209_L1.3891.00
96_V99_F1.3851.00
148_M197_A1.3691.00
192_T196_L1.3481.00
46_T50_S1.3351.00
91_A97_T1.3301.00
183_I190_I1.3291.00
45_I48_K1.3271.00
76_T197_A1.3211.00
78_P82_G1.3181.00
156_I182_L1.3171.00
152_T193_G1.3111.00
28_L32_I1.3081.00
57_G60_D1.3071.00
88_A153_E1.3021.00
167_S181_V1.2691.00
207_A211_T1.2671.00
89_E161_K1.2621.00
173_S177_T1.2611.00
161_K165_E1.2531.00
8_K12_G1.2531.00
11_T15_G1.2411.00
68_I241_T1.2411.00
51_A54_A1.2371.00
10_A14_F1.2191.00
162_D165_E1.2021.00
139_A211_T1.1981.00
282_W285_T1.1881.00
241_T244_V1.1851.00
85_V156_I1.1781.00
81_V190_I1.1781.00
205_A247_W1.1771.00
15_G19_A1.1761.00
49_S267_A1.1751.00
65_S242_L1.1691.00
71_I74_L1.1611.00
249_V258_A1.1521.00
24_I32_I1.1501.00
64_N67_Y1.1501.00
129_W134_I1.1501.00
136_G208_L1.1461.00
99_F102_T1.1291.00
26_V30_S1.1221.00
159_V185_S1.1141.00
74_L78_P1.1011.00
38_S43_Q1.1011.00
35_N38_S1.0901.00
77_I190_I1.0831.00
249_V253_G1.0731.00
22_A26_V1.0661.00
164_K174_R1.0661.00
28_L37_V1.0601.00
99_F103_C1.0591.00
123_F135_G1.0551.00
240_E245_H1.0431.00
248_N252_Q1.0401.00
33_I267_A1.0371.00
129_W132_T1.0311.00
187_I191_I1.0221.00
51_A55_G1.0201.00
88_A156_I1.0191.00
152_T189_S1.0171.00
131_Y134_I1.0161.00
72_T76_T1.0151.00
151_V193_G1.0151.00
240_E244_V1.0151.00
72_T140_L1.0121.00
75_I137_A1.0121.00
18_A22_A1.0111.00
66_F70_F1.0101.00
28_L36_G1.0071.00
145_L149_V1.0041.00
82_G86_F0.9911.00
250_N262_A0.9811.00
85_V174_R0.9801.00
71_I75_I0.9791.00
97_T157_R0.9711.00
85_V178_V0.9701.00
32_I49_S0.9651.00
24_I37_V0.9611.00
185_S188_P0.9581.00
19_A23_A0.9551.00
172_V177_T0.9531.00
204_E208_L0.9511.00
134_I138_L0.9481.00
48_K260_A0.9441.00
204_E207_A0.9401.00
137_A141_T0.9371.00
140_L201_V0.9361.00
245_H265_G0.9291.00
245_H248_N0.9221.00
133_I137_A0.9101.00
53_A59_R0.9101.00
32_I267_A0.9011.00
70_F74_L0.8991.00
67_Y70_F0.8971.00
17_C21_I0.8951.00
177_T180_T0.8951.00
74_L194_A0.8871.00
119_G139_A0.8871.00
119_G211_T0.8851.00
62_L242_L0.8821.00
130_G133_I0.8761.00
72_T137_A0.8761.00
62_L66_F0.8681.00
130_G134_I0.8681.00
155_A186_A0.8671.00
75_I78_P0.8671.00
279_A282_W0.8641.00
52_I268_V0.8601.00
148_M152_T0.8581.00
24_I35_N0.8521.00
9_L13_M0.8511.00
68_I133_I0.8501.00
51_A258_A0.8431.00
32_I36_G0.8401.00
247_W251_T0.8401.00
80_G149_V0.8391.00
105_E150_R0.8331.00
67_Y134_I0.8241.00
187_I190_I0.8241.00
14_F18_A0.8241.00
208_L241_T0.8231.00
84_G156_I0.8221.00
84_G88_A0.8211.00
186_A189_S0.8161.00
152_T186_A0.8141.00
174_R178_V0.8121.00
178_V183_I0.8091.00
197_A201_V0.8091.00
12_G16_L0.8081.00
179_K183_I0.8081.00
76_T80_G0.8041.00
58_I265_G0.7961.00
209_L244_V0.7951.00
98_D101_R0.7941.00
63_F66_F0.7941.00
86_F92_P0.7891.00
8_K11_T0.7861.00
68_I140_L0.7841.00
177_T182_L0.7831.00
172_V180_T0.7801.00
28_L39_Q0.7801.00
132_T135_G0.7761.00
112_S143_F0.7691.00
178_V182_L0.7601.00
87_M101_R0.7551.00
28_L35_N0.7511.00
139_A207_A0.7501.00
35_N39_Q0.7501.00
39_Q42_F0.7411.00
212_A216_T0.7411.00
215_T240_E0.7411.00
116_G206_A0.7411.00
64_N133_I0.7401.00
249_V261_I0.7371.00
46_T49_S0.7351.00
71_I141_T0.7351.00
273_V277_N0.7321.00
38_S42_F0.7321.00
76_T148_M0.7261.00
131_Y214_L0.7261.00
136_G140_L0.7251.00
244_V248_N0.7231.00
282_W286_M0.7201.00
69_L73_M0.7201.00
9_L12_G0.7191.00
80_G152_T0.7141.00
44_F47_T0.7131.00
120_L124_V0.7131.00
163_L181_V0.7121.00
135_G139_A0.7121.00
161_K168_L0.7121.00
33_I37_V0.7061.00
249_V265_G0.7051.00
124_V130_G0.7051.00
159_V186_A0.7031.00
166_A170_L0.7021.00
61_Q64_N0.7021.00
275_V279_A0.6991.00
28_L34_I0.6981.00
84_G149_V0.6961.00
116_G210_F0.6931.00
32_I37_V0.6931.00
68_I136_G0.6921.00
87_M100_I0.6911.00
105_E108_S0.6891.00
83_G145_L0.6891.00
134_I137_A0.6881.00
152_T156_I0.6811.00
144_N197_A0.6811.00
77_I152_T0.6801.00
48_K51_A0.6791.00
261_I265_G0.6791.00
49_S264_G0.6771.00
23_A27_G0.6771.00
73_M198_S0.6741.00
189_S193_G0.6741.00
263_N267_A0.6701.00
254_M258_A0.6691.00
76_T144_N0.6671.00
274_L278_L0.6631.00
281_R286_M0.6621.00
131_Y135_G0.6601.00
212_A240_E0.6591.00
76_T201_V0.6581.00
259_E262_A0.6571.00
108_S146_P0.6551.00
182_L185_S0.6541.00
87_M153_E0.6491.00
121_L126_L0.6481.00
28_L38_S0.6421.00
56_G60_D0.6401.00
259_E263_N0.6401.00
151_V189_S0.6381.00
55_G59_R0.6381.00
28_L40_L0.6281.00
45_I49_S0.6281.00
190_I194_A0.6271.00
190_I193_G0.6261.00
65_S243_A0.6221.00
119_G122_M0.6221.00
65_S202_F0.6201.00
59_R62_L0.6181.00
263_N266_S0.6141.00
27_G30_S0.6131.00
112_S206_A0.6131.00
16_L19_A0.6111.00
279_A283_L0.6111.00
90_Y97_T0.6081.00
115_I142_V0.6081.00
31_Y38_S0.6071.00
42_F45_I0.6061.00
177_T181_V0.6061.00
43_Q47_T0.6051.00
43_Q46_T0.6041.00
243_A269_L0.6041.00
52_I261_I0.6021.00
73_M77_I0.5971.00
52_I265_G0.5971.00
101_R150_R0.5951.00
83_G104_I0.5941.00
280_A283_L0.5921.00
121_L124_V0.5881.00
68_I137_A0.5851.00
79_L141_T0.5841.00
135_G211_T0.5811.00
42_F46_T0.5781.00
204_E241_T0.5781.00
199_G203_G0.5751.00
76_T141_T0.5751.00
269_L273_V0.5751.00
15_G18_A0.5741.00
136_G212_A0.5711.00
166_A169_A0.5711.00
91_A96_V0.5691.00
79_L145_L0.5691.00
27_G34_I0.5681.00
73_M201_V0.5631.00
242_L269_L0.5621.00
50_S53_A0.5611.00
61_Q242_L0.5611.00
129_W138_L0.5601.00
140_L208_L0.5581.00
143_F146_P0.5581.00
24_I34_I0.5571.00
246_I265_G0.5571.00
96_V100_I0.5541.00
24_I36_G0.5531.00
278_L281_R0.5521.00
100_I104_I0.5521.00
31_Y39_Q0.5501.00
179_K182_L0.5461.00
144_N200_R0.5461.00
206_A210_F0.5451.00
98_D102_T0.5421.00
11_T14_F0.5401.00
260_A263_N0.5391.00
206_A209_L0.5391.00
108_S147_V0.5381.00
191_I194_A0.5381.00
72_T141_T0.5371.00
194_A197_A0.5371.00
173_S179_K0.5361.00
21_I25_L0.5351.00
69_L201_V0.5341.00
249_V252_Q0.5341.00
280_A284_G0.5321.00
56_G59_R0.5291.00
112_S116_G0.5291.00
140_L204_E0.5281.00
83_G86_F0.5251.00
272_S275_V0.5251.00
92_P100_I0.5251.00
200_R203_G0.5251.00
53_A56_G0.5251.00
12_G15_G0.5221.00
244_V247_W0.5221.00
13_M16_L0.5211.00
103_C107_L0.5181.00
86_F90_Y0.5161.00
110_L114_V0.5131.00
22_A25_L0.5121.00
78_P81_V0.5111.00
253_G258_A0.5091.00
85_V182_L0.5071.00
68_I72_T0.5061.00
120_L130_G0.5061.00
16_L20_I0.5041.00
113_I210_F0.5041.00
34_I37_V0.5031.00
84_G153_E0.5021.00
272_S276_F0.5001.00
261_I264_G0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2onkC 2 0.8231 100 0.313 Contact Map
4tquM 1 0.8878 100 0.319 Contact Map
3d31C 2 0.8061 100 0.332 Contact Map
3rlfG 1 0.8776 100 0.361 Contact Map
3rlfF 1 0.898 100 0.376 Contact Map
4tquN 1 0.8707 100 0.378 Contact Map
4ymuD 2 0.7279 99.9 0.481 Contact Map
3tuiA 2 0.7177 99.9 0.495 Contact Map
3zuxA 1 0.8503 8.8 0.95 Contact Map
3w4tA 1 0.466 7.1 0.952 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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