GREMLIN Database
PSTS - Phosphate-binding protein PstS
UniProt: P46338 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 300 (262)
Sequences: 6105 (4344)
Seq/√Len: 268.4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
143_K148_K4.6091.00
137_S140_E3.8811.00
151_N159_D3.8011.00
153_K159_D3.4611.00
144_I162_I3.3881.00
160_Q208_G3.2571.00
227_S232_K2.6921.00
136_I226_L2.6751.00
49_S93_V2.5971.00
139_D143_K2.5051.00
125_A141_L2.4871.00
100_V106_E2.3301.00
134_K224_T2.2991.00
140_E143_K2.2821.00
135_D227_S2.2511.00
163_T206_T2.2471.00
151_N161_K2.2311.00
104_E108_I2.2191.00
49_S87_Q2.1961.00
64_K267_Y2.1871.00
68_E272_D2.1711.00
126_A203_I2.1441.00
114_V255_G2.1291.00
79_G83_T2.0841.00
52_S78_A2.0731.00
81_S98_S1.9961.00
126_A213_L1.9921.00
64_K67_E1.9851.00
65_F263_E1.9751.00
151_N160_Q1.9631.00
51_S54_M1.9371.00
55_Q78_A1.8341.00
176_T247_A1.8321.00
89_S110_A1.8001.00
125_A177_F1.7891.00
58_V264_F1.7661.00
127_V226_L1.7271.00
15_F18_I1.7001.00
138_K229_D1.6831.00
201_K205_D1.6461.00
116_H253_T1.6441.00
65_F72_A1.5971.00
137_S229_D1.5851.00
142_K185_A1.5851.00
58_V251_S1.5781.00
135_D229_D1.5621.00
143_K149_I1.5581.00
259_G263_E1.5511.00
150_K154_E1.5471.00
145_F164_L1.5111.00
58_V268_L1.5111.00
129_P207_P1.4851.00
141_L228_I1.4831.00
160_Q207_P1.4591.00
218_L225_A1.4531.00
136_I141_L1.4491.00
251_S268_L1.4471.00
55_Q59_L1.4391.00
134_K227_S1.4341.00
61_A268_L1.4311.00
66_M73_D1.4301.00
126_A223_V1.4291.00
48_I95_I1.4191.00
203_I211_G1.4081.00
88_V96_G1.4081.00
87_Q93_V1.4021.00
47_T75_Q1.3861.00
151_N157_G1.3861.00
144_I155_L1.3781.00
262_K266_D1.3741.00
98_S252_Y1.3711.00
237_N240_T1.3391.00
44_G260_L1.3231.00
122_G238_V1.3121.00
200_K213_L1.3111.00
94_Q257_A1.2951.00
97_N251_S1.2881.00
45_S75_Q1.2811.00
167_R171_S1.2751.00
190_G193_E1.2691.00
123_M247_A1.2501.00
116_H269_K1.2471.00
45_S73_D1.2381.00
165_V202_I1.2361.00
236_K239_A1.2281.00
91_G254_K1.2271.00
119_A249_Q1.2171.00
149_I154_E1.2131.00
117_Q248_Y1.2091.00
235_A279_T1.2041.00
196_S217_Y1.1931.00
279_T285_P1.1871.00
130_D207_P1.1861.00
234_E237_N1.1851.00
85_L98_S1.1821.00
263_E266_D1.1691.00
78_A197_N1.1621.00
139_D142_K1.1621.00
103_E106_E1.1611.00
54_M58_V1.1601.00
237_N242_E1.1511.00
138_K181_A1.1491.00
51_S99_D1.1471.00
145_F177_F1.1411.00
19_A22_C1.1391.00
65_F267_Y1.1341.00
253_T265_L1.1341.00
60_A280_D1.1331.00
275_K279_T1.1321.00
165_V209_A1.1301.00
58_V97_N1.1231.00
85_L102_A1.1211.00
115_D252_Y1.1051.00
140_E156_G1.1001.00
236_K240_T1.1001.00
164_L210_I1.0981.00
269_K274_Q1.0911.00
189_E192_T1.0781.00
49_S79_G1.0781.00
120_V248_Y1.0731.00
51_S58_V1.0681.00
102_A252_Y1.0671.00
86_S90_E1.0651.00
136_I144_I1.0581.00
87_Q92_A1.0571.00
239_A242_E1.0541.00
125_A243_Y1.0521.00
228_I245_I1.0461.00
102_A113_L1.0341.00
199_V211_G1.0291.00
53_A121_V1.0151.00
62_A76_V1.0151.00
60_A63_E1.0051.00
264_F268_L1.0041.00
108_I111_K1.0001.00
196_S213_L0.9971.00
151_N156_G0.9941.00
58_V118_V0.9941.00
119_A278_V0.9891.00
112_A255_G0.9881.00
15_F19_A0.9781.00
53_A249_Q0.9761.00
124_A218_L0.9641.00
238_V241_G0.9641.00
204_A222_K0.9621.00
121_V214_A0.9611.00
142_K146_T0.9591.00
62_A66_M0.9581.00
219_T222_K0.9531.00
121_V247_A0.9491.00
138_K142_K0.9491.00
165_V206_T0.9451.00
266_D270_S0.9431.00
54_M118_V0.9361.00
57_L119_A0.9211.00
260_L263_E0.9181.00
65_F264_F0.9161.00
150_K161_K0.9151.00
62_A264_F0.9111.00
16_M19_A0.9071.00
142_K145_F0.9021.00
42_A72_A0.8971.00
176_T180_Y0.8971.00
38_G42_A0.8881.00
93_V96_G0.8851.00
228_I243_Y0.8851.00
77_Q87_Q0.8821.00
57_L278_V0.8811.00
64_K277_I0.8791.00
231_V242_E0.8791.00
151_N154_E0.8761.00
99_D249_Q0.8711.00
101_F115_D0.8701.00
85_L96_G0.8671.00
105_K108_I0.8571.00
198_T202_I0.8571.00
153_K156_G0.8481.00
65_F69_N0.8441.00
132_G224_T0.8431.00
127_V224_T0.8391.00
174_R178_V0.8370.99
79_G87_Q0.8370.99
95_I251_S0.8350.99
132_G158_K0.8320.99
20_A23_G0.8290.99
275_K280_D0.8290.99
49_S77_Q0.8290.99
95_I253_T0.8280.99
46_L260_L0.8270.99
127_V133_V0.8250.99
62_A74_I0.8240.99
102_A115_D0.8210.99
124_A215_F0.8200.99
145_F210_I0.8190.99
215_F233_P0.8130.99
104_E107_G0.8110.99
99_D247_A0.8100.99
118_V251_S0.8080.99
123_M176_T0.8050.99
80_G84_G0.8010.99
136_I157_G0.7980.99
61_A273_I0.7960.99
202_I206_T0.7940.99
174_R212_Y0.7930.99
135_D230_G0.7930.99
18_I22_C0.7890.99
216_S283_Y0.7890.99
18_I21_A0.7840.99
259_G262_K0.7770.99
143_K146_T0.7770.99
17_M20_A0.7760.99
53_A99_D0.7750.99
195_S198_T0.7740.99
236_K241_G0.7710.99
60_A64_K0.7680.99
60_A281_Q0.7680.99
179_K183_D0.7680.99
100_V103_E0.7650.99
100_V175_A0.7620.99
110_A113_L0.7600.99
48_I97_N0.7570.99
171_S196_S0.7530.99
53_A247_A0.7510.99
142_K181_A0.7490.99
265_L269_K0.7450.99
85_L106_E0.7450.99
117_Q290_K0.7430.99
83_T87_Q0.7430.99
69_N263_E0.7390.99
118_V249_Q0.7320.99
121_V249_Q0.7320.99
277_I280_D0.7300.99
140_E155_L0.7290.99
107_G111_K0.7290.99
136_I140_E0.7290.99
165_V199_V0.7270.99
215_F219_T0.7260.99
105_K109_D0.7220.98
272_D275_K0.7210.98
50_G80_G0.7180.98
171_S194_D0.7160.98
20_A24_N0.7160.98
287_T290_K0.7140.98
178_V182_L0.7130.98
206_T209_A0.7130.98
115_D250_H0.7120.98
266_D269_K0.7110.98
15_F20_A0.7100.98
154_E157_G0.7100.98
255_G259_G0.7100.98
65_F260_L0.7090.98
251_S265_L0.7090.98
215_F235_A0.7080.98
168_P194_D0.7070.98
107_G113_L0.7020.98
55_Q79_G0.7020.98
167_R212_Y0.7010.98
52_S195_S0.7010.98
50_G84_G0.7000.98
94_Q258_T0.6990.98
274_Q278_V0.6990.98
40_E44_G0.6970.98
200_K219_T0.6930.98
153_K157_G0.6890.98
258_T261_A0.6860.98
16_M20_A0.6860.98
82_G170_S0.6840.98
232_K237_N0.6780.98
80_G173_T0.6710.98
88_V113_L0.6630.97
214_A217_Y0.6620.97
267_Y277_I0.6620.97
64_K68_E0.6590.97
124_A225_A0.6580.97
84_G96_G0.6560.97
57_L283_Y0.6550.97
125_A145_F0.6510.97
133_V136_I0.6500.97
231_V237_N0.6480.97
167_R196_S0.6480.97
89_S109_D0.6440.97
117_Q120_V0.6400.97
136_I155_L0.6400.97
128_N203_I0.6360.97
38_G41_K0.6310.97
61_A264_F0.6310.97
203_I209_A0.6300.96
53_A173_T0.6260.96
60_A277_I0.6220.96
59_L63_E0.6220.96
133_V224_T0.6220.96
52_S80_G0.6210.96
178_V188_A0.6200.96
56_P217_Y0.6180.96
138_K244_P0.6180.96
47_T94_Q0.6140.96
114_V117_Q0.6140.96
146_T182_L0.6130.96
58_V76_V0.6110.96
271_E275_K0.6110.96
126_A211_G0.6110.96
237_N241_G0.6020.95
146_T187_P0.6010.95
171_S199_V0.5970.95
136_I210_I0.5970.95
138_K180_Y0.5970.95
166_N212_Y0.5960.95
169_D178_V0.5950.95
44_G72_A0.5950.95
173_T196_S0.5930.95
141_L181_A0.5930.95
173_T247_A0.5920.95
144_I210_I0.5920.95
112_A254_K0.5910.95
167_R172_G0.5910.95
125_A245_I0.5900.95
106_E110_A0.5890.95
202_I205_D0.5880.95
101_F250_H0.5880.95
86_S109_D0.5880.95
94_Q261_A0.5870.95
51_S172_G0.5860.95
215_F238_V0.5840.95
61_A278_V0.5840.95
213_L217_Y0.5820.95
178_V187_P0.5810.94
95_I265_L0.5800.94
54_M251_S0.5780.94
52_S212_Y0.5780.94
66_M69_N0.5780.94
215_F237_N0.5770.94
89_S113_L0.5770.94
123_M173_T0.5770.94
84_G172_G0.5740.94
21_A24_N0.5730.94
51_S251_S0.5730.94
118_V268_L0.5720.94
22_C39_E0.5700.94
274_Q288_D0.5700.94
149_I155_L0.5690.94
166_N192_T0.5690.94
127_V131_A0.5690.94
43_S71_D0.5680.94
200_K223_V0.5680.94
46_L261_A0.5670.94
141_L145_F0.5660.94
235_A239_A0.5660.94
99_D121_V0.5660.94
80_G167_R0.5640.94
16_M22_C0.5620.93
229_D244_P0.5610.93
166_N190_G0.5590.93
150_K153_K0.5560.93
145_F166_N0.5550.93
19_A24_N0.5550.93
106_E109_D0.5490.93
124_A233_P0.5480.93
185_A188_A0.5470.93
238_V242_E0.5470.93
268_L273_I0.5440.92
182_L187_P0.5430.92
117_Q286_V0.5420.92
257_A261_A0.5410.92
87_Q90_E0.5390.92
42_A260_L0.5370.92
129_P208_G0.5350.92
54_M249_Q0.5340.92
140_E157_G0.5310.91
151_N155_L0.5310.91
189_E193_E0.5290.91
187_P190_G0.5270.91
163_T208_G0.5250.91
151_N208_G0.5240.91
48_I58_V0.5190.90
53_A283_Y0.5180.90
81_S96_G0.5170.90
181_A245_I0.5160.90
61_A64_K0.5160.90
136_I177_F0.5150.90
121_V283_Y0.5140.90
63_E67_E0.5140.90
178_V186_E0.5130.90
102_A106_E0.5130.90
175_A179_K0.5110.90
22_C41_K0.5090.90
117_Q287_T0.5080.90
72_A263_E0.5050.89
180_Y184_G0.5050.89
137_S141_L0.5040.89
162_I208_G0.5040.89
114_V253_T0.5020.89
270_S274_Q0.5010.89
47_T77_Q0.5000.89
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4f1vA 1 0.8367 100 0.275 Contact Map
4n13A 1 0.8 100 0.393 Contact Map
1pc3A 1 0.88 100 0.474 Contact Map
1ixhA 1 0.8467 100 0.48 Contact Map
4lvqA 1 0.8467 100 0.515 Contact Map
4ombA 1 0.9 100 0.522 Contact Map
4jwoA 1 0.86 100 0.526 Contact Map
4ecfA 1 0.8567 100 0.532 Contact Map
4exlA 1 0.86 100 0.539 Contact Map
1twyA 5 0.7967 100 0.558 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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