CINA - BACSU - GREMLIN Contacts

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CINA - Putative competence-damage inducible protein

UniProt:	P46323	Sequences: MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDLTKETIANTLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRYYMLLPGPPSELRPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLLKETEAVILERVGEFFYGYDDTSLVKELSIACKEKGITISAAESFTGGLFSEWLTDHSGASKLFAGGVVCYTNDVKQNVLGVKKETLDRFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDAQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKRGAKYGCHLILKLLEQK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	416 (406)
Sequences:	1600 (1264)
Seq/√Len:	62.8

ECOLI - CINAL
BACSU - CINA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
325_T	339_E	4.135	1.00
337_A	357_T	3.339	1.00
203_D	250_R	3.189	1.00
322_K	339_E	3.175	1.00
407_H	411_K	3.155	1.00
268_S	302_L	3.126	1.00
355_S	376_G	2.938	1.00
92_P	126_E	2.875	1.00
50_P	87_N	2.866	1.00
279_S	350_S	2.771	1.00
32_Q	35_E	2.716	1.00
323_K	327_D	2.682	1.00
8_E	63_R	2.648	1.00
334_K	338_S	2.570	1.00
289_F	356_F	2.559	1.00
407_H	410_L	2.533	1.00
7_A	38_V	2.493	1.00
342_K	383_E	2.492	1.00
68_I	153_L	2.486	1.00
338_S	385_V	2.461	1.00
292_W	402_A	2.372	1.00
50_P	84_T	2.367	1.00
70_S	160_L	2.273	1.00
22_A	27_Q	2.272	1.00
322_K	325_T	2.268	1.00
276_I	352_I	2.227	1.00
312_N	331_A	2.183	1.00
325_T	336_C	2.176	1.00
272_K	301_K	2.172	1.00
54_K	87_N	2.152	1.00
233_E	237_E	2.135	1.00
95_L	123_L	2.115	1.00
329_F	335_E	2.115	1.00
91_R	127_G	2.100	1.00
326_L	331_A	2.061	1.00
316_Q	323_K	2.055	1.00
264_V	292_W	2.039	1.00
32_Q	165_E	2.036	1.00
345_Q	378_S	2.029	1.00
185_T	241_K	1.994	1.00
94_V	126_E	1.990	1.00
278_I	409_I	1.978	1.00
11_A	45_A	1.960	1.00
134_H	167_E	1.945	1.00
23_N	26_A	1.934	1.00
142_L	171_L	1.917	1.00
344_V	353_G	1.904	1.00
359_V	369_E	1.887	1.00
28_F	165_E	1.886	1.00
185_T	244_E	1.876	1.00
276_I	351_D	1.869	1.00
83_E	120_K	1.854	1.00
286_G	294_T	1.851	1.00
318_V	347_L	1.808	1.00
305_G	348_T	1.801	1.00
304_A	350_S	1.797	1.00
309_C	314_V	1.794	1.00
309_C	340_L	1.783	1.00
365_Q	368_H	1.712	0.99
230_H	236_T	1.687	0.99
96_N	99_A	1.677	0.99
246_V	249_E	1.676	0.99
374_F	385_V	1.672	0.99
297_S	363_D	1.662	0.99
354_I	409_I	1.631	0.99
290_S	308_V	1.623	0.99
248_L	255_F	1.621	0.99
42_Y	59_I	1.608	0.99
23_N	43_H	1.607	0.99
118_N	195_S	1.599	0.99
101_Q	104_E	1.591	0.99
57_I	88_T	1.586	0.99
378_S	383_E	1.568	0.99
30_S	43_H	1.566	0.99
97_D	101_Q	1.543	0.99
278_I	293_L	1.535	0.99
364_A	369_E	1.534	0.99
288_L	402_A	1.530	0.99
134_H	166_N	1.527	0.99
364_A	370_P	1.523	0.99
124_V	130_V	1.523	0.99
279_S	344_V	1.515	0.98
151_M	168_A	1.514	0.98
291_E	295_D	1.500	0.98
365_Q	370_P	1.491	0.98
321_V	343_G	1.488	0.98
390_F	404_Y	1.487	0.98
38_V	172_L	1.485	0.98
314_V	348_T	1.478	0.98
291_E	398_R	1.448	0.98
334_K	385_V	1.442	0.98
8_E	44_T	1.438	0.98
104_E	119_R	1.437	0.98
8_E	60_A	1.434	0.98
338_S	342_K	1.432	0.98
268_S	296_H	1.424	0.98
365_Q	369_E	1.418	0.98
280_A	303_F	1.414	0.98
116_P	119_R	1.410	0.98
61_E	150_Y	1.403	0.97
299_A	302_L	1.398	0.97
351_D	380_N	1.393	0.97
61_E	148_R	1.390	0.97
366_E	369_E	1.388	0.97
210_N	239_L	1.384	0.97
334_K	387_E	1.378	0.97
345_Q	380_N	1.378	0.97
104_E	108_K	1.373	0.97
85_I	152_L	1.373	0.97
95_L	100_F	1.370	0.97
356_F	405_G	1.370	0.97
49_N	52_R	1.370	0.97
244_E	248_L	1.360	0.97
29_I	164_F	1.355	0.97
215_P	224_L	1.349	0.97
304_A	313_D	1.341	0.97
57_I	69_F	1.322	0.96
301_K	363_D	1.318	0.96
261_T	265_K	1.317	0.96
187_L	244_E	1.314	0.96
61_E	88_T	1.313	0.96
204_I	247_I	1.300	0.96
65_D	148_R	1.295	0.96
270_A	410_L	1.293	0.96
100_F	104_E	1.292	0.96
91_R	126_E	1.286	0.96
107_F	118_N	1.277	0.96
280_A	290_S	1.261	0.95
279_S	348_T	1.259	0.95
192_I	197_L	1.257	0.95
156_P	162_P	1.249	0.95
226_L	240_L	1.238	0.95
210_N	228_A	1.234	0.95
374_F	387_E	1.234	0.95
232_D	235_E	1.227	0.94
95_L	119_R	1.226	0.94
264_V	295_D	1.223	0.94
261_T	269_I	1.221	0.94
100_F	119_R	1.218	0.94
364_A	367_G	1.211	0.94
131_L	142_L	1.209	0.94
184_S	227_T	1.208	0.94
189_F	251_V	1.206	0.94
50_P	54_K	1.200	0.94
284_F	365_Q	1.194	0.94
366_E	370_P	1.193	0.94
6_K	39_N	1.191	0.94
57_I	67_I	1.185	0.93
91_R	145_H	1.179	0.93
69_F	152_L	1.179	0.93
290_S	303_F	1.176	0.93
39_N	229_K	1.175	0.93
121_Q	137_M	1.172	0.93
291_E	402_A	1.170	0.93
36_I	169_K	1.169	0.93
241_K	245_A	1.163	0.93
320_G	347_L	1.161	0.93
359_V	366_E	1.159	0.93
345_Q	353_G	1.157	0.93
140_G	163_M	1.156	0.93
226_L	244_E	1.156	0.93
307_V	344_V	1.154	0.92
198_E	202_E	1.153	0.92
313_D	317_N	1.152	0.92
107_F	114_M	1.150	0.92
187_L	255_F	1.149	0.92
53_L	84_T	1.148	0.92
354_I	377_I	1.147	0.92
280_A	306_G	1.146	0.92
321_V	325_T	1.146	0.92
54_K	58_R	1.128	0.92
342_K	345_Q	1.122	0.91
338_S	383_E	1.122	0.91
131_L	168_A	1.120	0.91
103_I	122_A	1.117	0.91
96_N	124_V	1.112	0.91
288_L	291_E	1.112	0.91
294_T	299_A	1.106	0.91
392_G	397_I	1.106	0.91
337_A	355_S	1.102	0.91
101_Q	105_D	1.101	0.91
8_E	64_S	1.098	0.90
125_I	141_M	1.092	0.90
312_N	369_E	1.090	0.90
359_V	364_A	1.088	0.90
268_S	299_A	1.086	0.90
197_L	251_V	1.085	0.90
248_L	258_Y	1.084	0.90
58_R	88_T	1.084	0.90
51_E	55_Q	1.083	0.90
196_Q	200_D	1.083	0.90
257_G	261_T	1.077	0.90
243_T	246_V	1.077	0.90
330_G	369_E	1.074	0.89
289_F	405_G	1.072	0.89
277_T	304_A	1.070	0.89
352_I	379_A	1.069	0.89
305_G	314_V	1.068	0.89
30_S	40_V	1.068	0.89
261_T	266_E	1.068	0.89
28_F	164_F	1.060	0.89
167_E	171_L	1.059	0.89
267_L	410_L	1.056	0.89
124_V	139_P	1.056	0.89
192_I	254_F	1.054	0.89
188_R	221_E	1.053	0.89
326_L	336_C	1.047	0.88
16_L	21_I	1.046	0.88
295_D	398_R	1.035	0.88
280_A	289_F	1.032	0.87
152_L	156_P	1.030	0.87
342_K	346_K	1.026	0.87
288_L	398_R	1.024	0.87
201_L	247_I	1.019	0.87
310_Y	315_K	1.017	0.87
44_T	63_R	1.017	0.87
58_R	62_E	1.012	0.86
377_I	412_L	1.006	0.86
77_K	202_E	1.003	0.86
33_L	68_I	0.991	0.85
21_I	27_Q	0.984	0.85
359_V	370_P	0.980	0.85
352_I	409_I	0.978	0.85
353_G	378_S	0.977	0.84
267_L	270_A	0.975	0.84
384_E	412_L	0.972	0.84
345_Q	379_A	0.964	0.84
317_N	349_G	0.963	0.84
279_S	353_G	0.962	0.84
164_F	169_K	0.961	0.83
49_N	212_T	0.955	0.83
189_F	197_L	0.954	0.83
292_W	403_K	0.953	0.83
334_K	374_F	0.951	0.83
144_E	147_S	0.949	0.83
375_I	388_F	0.948	0.83
267_L	406_C	0.947	0.83
132_A	167_E	0.945	0.82
237_E	241_K	0.944	0.82
153_L	160_L	0.944	0.82
124_V	141_M	0.943	0.82
67_I	148_R	0.943	0.82
307_V	314_V	0.939	0.82
284_F	356_F	0.937	0.82
377_I	408_L	0.932	0.82
312_N	330_G	0.922	0.81
153_L	168_A	0.921	0.81
386_H	408_L	0.917	0.80
69_F	85_I	0.917	0.80
131_L	167_E	0.915	0.80
46_V	56_V	0.911	0.80
281_A	319_L	0.910	0.80
67_I	150_Y	0.909	0.80
189_F	255_F	0.909	0.80
102_S	132_A	0.908	0.80
10_I	56_V	0.906	0.80
316_Q	326_L	0.904	0.80
284_F	331_A	0.904	0.80
118_N	121_Q	0.897	0.79
367_G	370_P	0.897	0.79
255_F	258_Y	0.894	0.79
341_A	378_S	0.892	0.79
312_N	365_Q	0.892	0.79
356_F	401_G	0.889	0.78
373_V	397_I	0.889	0.78
379_A	382_K	0.885	0.78
117_N	199_A	0.885	0.78
66_F	151_M	0.883	0.78
14_S	52_R	0.879	0.78
228_A	239_L	0.876	0.77
115_S	199_A	0.869	0.77
300_S	315_K	0.868	0.77
307_V	348_T	0.867	0.77
10_I	60_A	0.862	0.76
269_I	272_K	0.861	0.76
300_S	310_Y	0.860	0.76
325_T	335_E	0.860	0.76
205_I	213_I	0.859	0.76
189_F	192_I	0.858	0.76
330_G	359_V	0.855	0.76
197_L	224_L	0.854	0.76
97_D	104_E	0.849	0.75
221_E	256_Y	0.848	0.75
164_F	168_A	0.843	0.75
283_S	315_K	0.842	0.74
27_Q	30_S	0.842	0.74
151_M	171_L	0.842	0.74
244_E	258_Y	0.841	0.74
162_P	166_N	0.837	0.74
54_K	84_T	0.837	0.74
269_I	273_E	0.837	0.74
283_S	310_Y	0.836	0.74
188_R	223_T	0.836	0.74
55_Q	62_E	0.835	0.74
372_H	387_E	0.835	0.74
359_V	365_Q	0.834	0.74
7_A	66_F	0.833	0.74
105_D	109_R	0.832	0.74
93_L	123_L	0.826	0.73
214_A	225_R	0.826	0.73
189_F	254_F	0.824	0.73
135_F	162_P	0.823	0.73
54_K	88_T	0.823	0.73
8_E	42_Y	0.823	0.73
370_P	397_I	0.823	0.73
23_N	45_A	0.821	0.73
20_Q	216_L	0.820	0.73
91_R	125_I	0.820	0.73
262_S	265_K	0.817	0.72
314_V	318_V	0.817	0.72
364_A	368_H	0.816	0.72
293_L	296_H	0.816	0.72
277_T	350_S	0.815	0.72
343_G	347_L	0.815	0.72
40_V	43_H	0.812	0.72
205_I	208_Q	0.810	0.72
47_G	52_R	0.808	0.71
240_L	244_E	0.807	0.71
60_A	63_R	0.804	0.71
89_L	143_T	0.799	0.71
12_V	53_L	0.799	0.71
284_F	373_V	0.798	0.70
141_M	152_L	0.797	0.70
89_L	125_I	0.795	0.70
182_I	229_K	0.795	0.70
284_F	364_A	0.794	0.70
376_G	385_V	0.788	0.69
44_T	56_V	0.787	0.69
226_L	243_T	0.784	0.69
149_Y	171_L	0.783	0.69
55_Q	59_I	0.782	0.69
312_N	366_E	0.779	0.69
52_R	212_T	0.776	0.68
208_Q	213_I	0.774	0.68
106_Y	110_T	0.774	0.68
134_H	162_P	0.772	0.68
190_F	404_Y	0.771	0.68
12_V	69_F	0.771	0.68
289_F	402_A	0.769	0.68
395_T	398_R	0.766	0.67
310_Y	362_P	0.766	0.67
288_L	292_W	0.764	0.67
312_N	359_V	0.764	0.67
289_F	406_C	0.753	0.66
264_V	296_H	0.752	0.66
266_E	269_I	0.751	0.66
388_F	404_Y	0.746	0.65
114_M	119_R	0.745	0.65
142_L	151_M	0.743	0.65
32_Q	169_K	0.743	0.65
388_F	408_L	0.743	0.65
28_F	161_R	0.741	0.65
14_S	217_A	0.739	0.65
242_E	246_V	0.738	0.64
9_I	33_L	0.737	0.64
312_N	364_A	0.737	0.64
315_K	362_P	0.736	0.64
270_A	273_E	0.736	0.64
129_D	144_E	0.736	0.64
294_T	303_F	0.734	0.64
142_L	149_Y	0.728	0.63
153_L	156_P	0.727	0.63
335_E	339_E	0.727	0.63
129_D	171_L	0.726	0.63
397_I	401_G	0.725	0.63
276_I	380_N	0.725	0.63
18_L	34_A	0.724	0.63
41_F	52_R	0.724	0.63
131_L	171_L	0.718	0.62
18_L	225_R	0.717	0.62
315_K	361_G	0.717	0.62
396_G	400_R	0.715	0.62
270_A	274_K	0.714	0.62
99_A	124_V	0.712	0.62
190_F	263_L	0.710	0.61
393_S	396_G	0.705	0.61
200_D	250_R	0.705	0.61
11_A	26_A	0.704	0.61
284_F	294_T	0.704	0.61
311_T	369_E	0.704	0.61
319_L	340_L	0.703	0.61
89_L	145_H	0.702	0.61
186_V	223_T	0.699	0.60
280_A	354_I	0.699	0.60
105_D	108_K	0.695	0.60
207_A	246_V	0.694	0.60
128_S	143_T	0.694	0.60
307_V	318_V	0.691	0.59
324_E	328_R	0.689	0.59
315_K	360_A	0.689	0.59
352_I	380_N	0.688	0.59
345_Q	381_G	0.688	0.59
107_F	193_G	0.684	0.59
235_E	238_R	0.683	0.58
14_S	212_T	0.683	0.58
131_L	140_G	0.681	0.58
45_A	215_P	0.680	0.58
361_G	371_G	0.680	0.58
310_Y	394_R	0.678	0.58
36_I	164_F	0.677	0.58
293_L	303_F	0.677	0.58
265_K	269_I	0.676	0.58
68_I	130_V	0.675	0.58
310_Y	332_V	0.670	0.57
60_A	64_S	0.669	0.57
337_A	374_F	0.669	0.57
60_A	67_I	0.667	0.57
125_I	152_L	0.667	0.57
344_V	348_T	0.666	0.57
180_E	229_K	0.663	0.56
310_Y	360_A	0.663	0.56
85_I	150_Y	0.662	0.56
156_P	160_L	0.662	0.56
86_A	93_L	0.661	0.56
183_V	237_E	0.661	0.56
357_T	374_F	0.659	0.56
44_T	60_A	0.659	0.56
25_N	156_P	0.658	0.56
305_G	318_V	0.657	0.56
153_L	163_M	0.657	0.56
100_F	114_M	0.655	0.55
204_I	250_R	0.654	0.55
310_Y	358_G	0.653	0.55
315_K	358_G	0.653	0.55
77_K	205_I	0.652	0.55
12_V	216_L	0.650	0.55
17_L	216_L	0.649	0.55
317_N	347_L	0.649	0.55
358_G	371_G	0.648	0.54
379_A	412_L	0.648	0.54
284_F	359_V	0.647	0.54
291_E	395_T	0.646	0.54
29_I	169_K	0.646	0.54
25_N	160_L	0.645	0.54
331_A	365_Q	0.645	0.54
28_F	32_Q	0.644	0.54
283_S	300_S	0.642	0.54
331_A	366_E	0.642	0.54
339_E	343_G	0.642	0.54
184_S	212_T	0.642	0.54
91_R	143_T	0.641	0.54
156_P	217_A	0.640	0.54
82_K	141_M	0.640	0.54
189_F	221_E	0.639	0.53
266_E	410_L	0.639	0.53
102_S	106_Y	0.637	0.53
29_I	68_I	0.636	0.53
310_Y	361_G	0.634	0.53
315_K	394_R	0.634	0.53
133_N	138_A	0.632	0.53
283_S	362_P	0.631	0.53
246_V	250_R	0.631	0.53
311_T	314_V	0.630	0.52
358_G	362_P	0.629	0.52
268_S	293_L	0.629	0.52
300_S	362_P	0.628	0.52
130_V	139_P	0.628	0.52
408_L	412_L	0.628	0.52
373_V	390_F	0.627	0.52
43_H	47_G	0.627	0.52
198_E	215_P	0.626	0.52
358_G	394_R	0.625	0.52
218_A	223_T	0.625	0.52
52_R	211_P	0.625	0.52
193_G	196_Q	0.624	0.52
56_V	59_I	0.620	0.51
283_S	358_G	0.620	0.51
27_Q	161_R	0.620	0.51
193_G	222_V	0.620	0.51
82_K	216_L	0.619	0.51
312_N	370_P	0.619	0.51
131_L	163_M	0.618	0.51
77_K	206_D	0.616	0.51
238_R	242_E	0.615	0.51
368_H	387_E	0.614	0.51
56_V	60_A	0.612	0.50
169_K	173_L	0.612	0.50
362_P	371_G	0.611	0.50
283_S	360_A	0.611	0.50
183_V	240_L	0.610	0.50
331_A	364_A	0.610	0.50
300_S	360_A	0.607	0.50
331_A	359_V	0.607	0.50
298_G	310_Y	0.605	0.50
357_T	376_G	0.605	0.50
121_Q	195_S	0.604	0.49
298_G	315_K	0.604	0.49
92_P	346_K	0.603	0.49
80_L	120_K	0.602	0.49
14_S	215_P	0.601	0.49
201_L	205_I	0.600	0.49
343_G	346_K	0.600	0.49
331_A	369_E	0.598	0.49
215_P	222_V	0.597	0.49
185_T	258_Y	0.595	0.48
300_S	394_R	0.594	0.48
211_P	239_L	0.594	0.48
331_A	343_G	0.593	0.48
310_Y	371_G	0.593	0.48
77_K	215_P	0.592	0.48
342_K	378_S	0.591	0.48
228_A	236_T	0.590	0.48
17_L	214_A	0.590	0.48
283_S	361_G	0.589	0.48
331_A	370_P	0.587	0.48
23_N	152_L	0.587	0.48
305_G	309_C	0.586	0.47
57_I	85_I	0.586	0.47
156_P	215_P	0.586	0.47
96_N	130_V	0.585	0.47
268_S	272_K	0.584	0.47
205_I	215_P	0.583	0.47
373_V	401_G	0.582	0.47
290_S	306_G	0.582	0.47
101_Q	381_G	0.580	0.47
26_A	43_H	0.579	0.47
360_A	394_R	0.579	0.47
27_Q	31_K	0.577	0.46
358_G	361_G	0.573	0.46
320_G	343_G	0.573	0.46
211_P	226_L	0.573	0.46
210_N	227_T	0.572	0.46
315_K	340_L	0.572	0.46
354_I	405_G	0.570	0.46
386_H	411_K	0.569	0.45
362_P	394_R	0.568	0.45
163_M	167_E	0.568	0.45
315_K	371_G	0.566	0.45
283_S	394_R	0.565	0.45
82_K	214_A	0.564	0.45
292_W	295_D	0.564	0.45
77_K	198_E	0.562	0.45
180_E	232_D	0.562	0.45
311_T	330_G	0.562	0.45
292_W	399_K	0.560	0.44
214_A	227_T	0.559	0.44
291_E	294_T	0.559	0.44
200_D	253_E	0.559	0.44
188_R	257_G	0.558	0.44
192_I	251_V	0.558	0.44
283_S	340_L	0.557	0.44
75_P	118_N	0.556	0.44
120_K	123_L	0.556	0.44
85_I	143_T	0.555	0.44
275_G	301_K	0.555	0.44
99_A	128_S	0.554	0.44
12_V	156_P	0.553	0.44
300_S	361_G	0.553	0.44
283_S	332_V	0.551	0.43
50_P	354_I	0.550	0.43
245_A	249_E	0.547	0.43
18_L	52_R	0.545	0.43
18_L	184_S	0.545	0.43
307_V	347_L	0.544	0.43
29_I	160_L	0.543	0.43
129_D	174_K	0.542	0.42
254_F	411_K	0.541	0.42
10_I	69_F	0.541	0.42
360_A	371_G	0.541	0.42
49_N	211_P	0.541	0.42
310_Y	340_L	0.540	0.42
312_N	326_L	0.539	0.42
293_L	299_A	0.539	0.42
239_L	243_T	0.538	0.42
201_L	224_L	0.537	0.42
350_S	353_G	0.536	0.42
181_K	230_H	0.536	0.42
284_F	312_N	0.535	0.42
376_G	386_H	0.534	0.41
144_E	149_Y	0.533	0.41
188_R	256_Y	0.533	0.41
321_V	332_V	0.532	0.41
398_R	402_A	0.532	0.41
280_A	344_V	0.532	0.41
300_S	358_G	0.529	0.41
257_G	260_D	0.529	0.41
141_M	156_P	0.529	0.41
185_T	240_L	0.528	0.41
18_L	214_A	0.526	0.41
101_Q	108_K	0.525	0.40
251_V	255_F	0.524	0.40
312_N	343_G	0.524	0.40
99_A	102_S	0.523	0.40
160_L	164_F	0.522	0.40
77_K	82_K	0.521	0.40
99_A	103_I	0.520	0.40
121_Q	138_A	0.520	0.40
86_A	92_P	0.518	0.40
402_A	405_G	0.518	0.40
298_G	394_R	0.518	0.40
133_N	136_G	0.518	0.40
312_N	321_V	0.517	0.40
14_S	41_F	0.515	0.39
268_S	271_C	0.514	0.39
276_I	379_A	0.514	0.39
375_I	405_G	0.513	0.39
32_Q	164_F	0.512	0.39
320_G	339_E	0.509	0.39
304_A	351_D	0.508	0.39
352_I	412_L	0.507	0.39
257_G	262_S	0.506	0.38
392_G	400_R	0.506	0.38
135_F	158_S	0.506	0.38
156_P	164_F	0.504	0.38
55_Q	58_R	0.503	0.38
31_K	161_R	0.502	0.38
361_G	394_R	0.501	0.38
162_P	167_E	0.500	0.38
267_L	409_I	0.500	0.38

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4uuwA	2	0.9447	100	0.245	Contact Map
2a9sA	2	0.3918	100	0.651	Contact Map
3kbqA	2	0.4087	100	0.702	Contact Map
1y5eA	4	0.3798	100	0.784	Contact Map
2is8A	3	0.3822	100	0.785	Contact Map
3iwtA	4	0.3726	100	0.788	Contact Map
2g2cA	1	0.3558	100	0.788	Contact Map
3pzyA	3	0.3582	100	0.791	Contact Map
3rfqA	5	0.3726	100	0.791	Contact Map
1mkzA	2	0.3942	100	0.792	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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