YQCI - BACSU - GREMLIN Contacts

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YQCI - Uncharacterized protein YqcI

UniProt:	P45944	Sequences: MTELYAKSDLEKIKETLPGWQLDSFNYLNEKIGDKENKFPCIPGRQAFLSDQLRIAFVGDPRNPETAKELAPLLTRYGTISRETGKYASLTVIFHTPEELLTDYKIEDYESLFWQLLNSLSMEDPADWPDDIPENPDNFQWEYCFNGEPYFVLCATPAHSKRKSRSFPYFMLTFQPRWVFEDLNDTTAFGRNMSKQIRKRLEAYDEVPIHPHLGWYGKKDNLEWKQYFLRDDENQVSQCPFMKMKNLFKKKRSD	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	254 (216)
Sequences:	417 (301)
Seq/√Len:	20.5

BACSU - YQCI YCGG
HALSA - Q9HQL8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
110_E	230_R	4.462	1.00
78_G	150_Y	4.160	1.00
56_A	73_L	3.928	1.00
174_F	180_F	3.759	1.00
118_N	122_M	3.474	1.00
152_V	172_L	3.364	1.00
217_G	223_E	2.928	0.99
58_V	73_L	2.714	0.99
105_K	108_D	2.583	0.98
67_A	116_L	2.566	0.98
164_S	201_L	2.450	0.97
187_T	190_G	2.344	0.96
39_F	151_F	2.336	0.96
132_I	142_E	2.238	0.95
75_T	146_N	2.233	0.95
223_E	226_Q	2.226	0.95
43_P	214_G	2.179	0.94
118_N	121_S	2.162	0.94
34_D	38_K	2.117	0.94
58_V	70_L	2.091	0.93
84_T	88_A	2.060	0.93
217_G	226_Q	1.974	0.91
74_L	145_F	1.967	0.91
190_G	224_W	1.964	0.91
65_E	123_E	1.929	0.90
160_S	207_V	1.927	0.90
153_L	175_Q	1.922	0.90
126_A	146_N	1.805	0.86
175_Q	180_F	1.802	0.86
40_P	201_L	1.800	0.86
28_L	93_I	1.777	0.86
44_G	183_L	1.701	0.83
58_V	92_V	1.693	0.83
117_L	198_R	1.690	0.82
129_P	176_P	1.669	0.82
163_K	206_E	1.630	0.80
175_Q	183_L	1.606	0.79
56_A	90_L	1.605	0.79
136_P	210_H	1.545	0.76
213_L	239_C	1.538	0.76
163_K	204_Y	1.513	0.75
117_L	128_W	1.499	0.74
179_V	201_L	1.498	0.74
62_R	96_T	1.495	0.74
46_Q	181_E	1.493	0.74
26_N	30_E	1.488	0.73
123_E	145_F	1.485	0.73
71_A	145_F	1.438	0.71
59_G	95_H	1.435	0.71
121_S	241_F	1.433	0.71
25_F	29_N	1.432	0.70
25_F	48_F	1.431	0.70
121_S	243_K	1.427	0.70
43_P	167_F	1.418	0.70
75_T	125_P	1.405	0.69
18_P	21_Q	1.401	0.69
47_A	89_S	1.362	0.66
91_T	171_M	1.356	0.66
31_K	39_F	1.342	0.65
118_N	136_P	1.334	0.65
194_S	223_E	1.315	0.64
128_W	198_R	1.252	0.60
94_F	136_P	1.227	0.58
127_D	203_A	1.221	0.58
43_P	155_A	1.220	0.58
134_E	225_K	1.216	0.57
32_I	38_K	1.213	0.57
43_P	193_M	1.212	0.57
93_I	142_E	1.205	0.57
67_A	120_L	1.200	0.56
121_S	206_E	1.194	0.56
47_A	53_L	1.176	0.55
60_D	108_D	1.171	0.55
164_S	233_E	1.159	0.54
70_L	116_L	1.150	0.53
177_R	224_W	1.145	0.53
47_A	167_F	1.142	0.53
42_I	45_R	1.138	0.52
175_Q	190_G	1.138	0.52
30_E	112_L	1.137	0.52
44_G	175_Q	1.137	0.52
110_E	234_N	1.126	0.52
42_I	213_L	1.121	0.51
174_F	183_L	1.113	0.51
39_F	47_A	1.112	0.51
162_R	208_P	1.110	0.51
93_I	238_Q	1.106	0.50
137_D	222_L	1.104	0.50
28_L	199_K	1.099	0.50
106_I	228_F	1.070	0.48
174_F	181_E	1.067	0.48
70_L	92_V	1.067	0.48
61_P	86_K	1.063	0.47
34_D	166_S	1.061	0.47
19_G	23_D	1.060	0.47
91_T	238_Q	1.036	0.46
154_C	179_V	1.013	0.44
183_L	193_M	1.003	0.44
60_D	197_I	1.003	0.44
170_F	222_L	0.994	0.43
141_W	229_L	0.985	0.42
145_F	155_A	0.982	0.42
104_Y	108_D	0.980	0.42
66_T	168_P	0.976	0.42
180_F	226_Q	0.975	0.42
122_M	241_F	0.974	0.42
180_F	190_G	0.971	0.42
153_L	174_F	0.970	0.41
89_S	174_F	0.968	0.41
173_T	214_G	0.958	0.41
189_F	200_R	0.952	0.40
29_N	48_F	0.950	0.40
60_D	97_P	0.949	0.40
61_P	112_L	0.949	0.40
133_P	138_N	0.947	0.40
90_L	227_Y	0.943	0.40
93_I	96_T	0.940	0.40
176_P	194_S	0.938	0.39
64_P	119_S	0.933	0.39
43_P	151_F	0.928	0.39
223_E	227_Y	0.923	0.39
55_I	231_D	0.922	0.38
56_A	242_M	0.918	0.38
32_I	51_D	0.913	0.38
66_T	171_M	0.912	0.38
192_N	199_K	0.906	0.37
216_Y	223_E	0.906	0.37
225_K	241_F	0.905	0.37
177_R	226_Q	0.901	0.37
175_Q	207_V	0.900	0.37
142_E	150_Y	0.885	0.36
153_L	229_L	0.877	0.36
60_D	178_W	0.875	0.36
78_G	146_N	0.873	0.35
184_N	210_H	0.872	0.35
108_D	137_D	0.871	0.35
141_W	201_L	0.868	0.35
127_D	146_N	0.858	0.35
39_F	201_L	0.854	0.34
113_F	216_Y	0.852	0.34
54_R	221_N	0.851	0.34
144_C	212_H	0.850	0.34
142_E	154_C	0.850	0.34
180_F	183_L	0.845	0.34
132_I	227_Y	0.836	0.33
77_Y	90_L	0.835	0.33
98_E	105_K	0.832	0.33
179_V	228_F	0.831	0.33
47_A	151_F	0.831	0.33
53_L	91_T	0.828	0.33
170_F	179_V	0.827	0.33
33_G	127_D	0.824	0.33
132_I	144_C	0.819	0.32
68_K	123_E	0.818	0.32
87_Y	186_T	0.817	0.32
207_V	233_E	0.814	0.32
65_E	143_Y	0.814	0.32
64_P	76_R	0.813	0.32
142_E	173_T	0.808	0.32
151_F	164_S	0.800	0.31
77_Y	125_P	0.793	0.31
48_F	55_I	0.793	0.31
144_C	154_C	0.790	0.31
142_E	227_Y	0.788	0.31
26_N	127_D	0.779	0.30
44_G	180_F	0.777	0.30
39_F	155_A	0.776	0.30
177_R	223_E	0.773	0.30
124_D	157_P	0.772	0.30
50_S	77_Y	0.772	0.30
64_P	68_K	0.771	0.30
117_L	123_E	0.769	0.29
131_D	149_P	0.768	0.29
39_F	186_T	0.768	0.29
149_P	183_L	0.765	0.29
194_S	197_I	0.762	0.29
23_D	65_E	0.761	0.29
162_R	210_H	0.759	0.29
210_H	224_W	0.757	0.29
110_E	181_E	0.755	0.29
179_V	207_V	0.754	0.29
142_E	177_R	0.750	0.28
154_C	228_F	0.749	0.28
175_Q	182_D	0.745	0.28
30_E	83_E	0.742	0.28
105_K	206_E	0.737	0.28
121_S	163_K	0.734	0.28
76_R	218_K	0.734	0.28
139_F	222_L	0.734	0.28
175_Q	210_H	0.730	0.27
201_L	229_L	0.727	0.27
22_L	26_N	0.726	0.27
119_S	143_Y	0.726	0.27
74_L	90_L	0.723	0.27
57_F	164_S	0.721	0.27
40_P	93_I	0.719	0.27
129_P	149_P	0.716	0.27
69_E	130_D	0.714	0.27
110_E	212_H	0.713	0.27
169_Y	192_N	0.712	0.26
177_R	190_G	0.706	0.26
170_F	228_F	0.699	0.26
48_F	189_F	0.698	0.26
110_E	211_P	0.696	0.26
145_F	176_P	0.694	0.26
77_Y	187_T	0.694	0.26
109_Y	208_P	0.693	0.25
66_T	71_A	0.688	0.25
138_N	243_K	0.688	0.25
57_F	221_N	0.686	0.25
89_S	242_M	0.678	0.25
78_G	193_M	0.678	0.25
57_F	176_P	0.677	0.25
72_P	195_K	0.674	0.25
59_G	75_T	0.673	0.25
23_D	76_R	0.672	0.24
149_P	174_F	0.671	0.24
42_I	48_F	0.670	0.24
29_N	33_G	0.669	0.24
161_K	201_L	0.666	0.24
152_V	189_F	0.666	0.24
175_Q	187_T	0.665	0.24
48_F	75_T	0.665	0.24
121_S	207_V	0.665	0.24
44_G	174_F	0.664	0.24
172_L	202_E	0.663	0.24
109_Y	162_R	0.660	0.24
113_F	228_F	0.660	0.24
68_K	122_M	0.659	0.24
115_Q	235_Q	0.658	0.24
46_Q	144_C	0.657	0.24
155_A	177_R	0.656	0.24
210_H	228_F	0.655	0.24
17_L	22_L	0.654	0.24
135_N	158_A	0.654	0.24
45_R	207_V	0.653	0.24
228_F	231_D	0.650	0.23
197_I	228_F	0.648	0.23
176_P	216_Y	0.643	0.23
199_K	203_A	0.638	0.23
39_F	176_P	0.630	0.22
62_R	97_P	0.628	0.22
58_V	90_L	0.626	0.22
153_L	190_G	0.626	0.22
125_P	146_N	0.625	0.22
30_E	120_L	0.624	0.22
39_F	193_M	0.623	0.22
60_D	92_V	0.622	0.22
26_N	34_D	0.620	0.22
142_E	175_Q	0.619	0.22
137_D	202_E	0.618	0.22
27_Y	83_E	0.618	0.22
156_T	228_F	0.617	0.22
43_P	216_Y	0.617	0.22
190_G	229_L	0.614	0.22
78_G	122_M	0.613	0.22
69_E	72_P	0.610	0.22
180_F	239_C	0.610	0.22
29_N	118_N	0.608	0.21
153_L	167_F	0.603	0.21
82_R	128_W	0.603	0.21
132_I	216_Y	0.600	0.21
28_L	200_R	0.598	0.21
174_F	222_L	0.598	0.21
50_S	168_P	0.598	0.21
72_P	107_E	0.593	0.21
142_E	222_L	0.591	0.21
105_K	218_K	0.591	0.21
122_M	203_A	0.589	0.21
105_K	126_A	0.582	0.20
32_I	81_S	0.580	0.20
76_R	92_V	0.580	0.20
85_G	167_F	0.580	0.20
27_Y	44_G	0.579	0.20
152_V	196_Q	0.578	0.20
40_P	164_S	0.573	0.20
99_E	107_E	0.572	0.20
175_Q	179_V	0.572	0.20
38_K	142_E	0.571	0.20
113_F	179_V	0.568	0.20
34_D	127_D	0.567	0.20
62_R	116_L	0.565	0.20
30_E	203_A	0.565	0.20
132_I	150_Y	0.563	0.20
17_L	146_N	0.563	0.20
113_F	153_L	0.563	0.20
148_E	178_W	0.561	0.19
43_P	168_P	0.560	0.19
39_F	213_L	0.559	0.19
140_Q	160_S	0.559	0.19
113_F	231_D	0.557	0.19
144_C	174_F	0.554	0.19
39_F	43_P	0.553	0.19
155_A	173_T	0.552	0.19
63_N	119_S	0.552	0.19
97_P	235_Q	0.549	0.19
155_A	170_F	0.548	0.19
168_P	197_I	0.547	0.19
155_A	222_L	0.544	0.19
142_E	179_V	0.543	0.19
127_D	130_D	0.542	0.19
21_Q	178_W	0.540	0.19
40_P	226_Q	0.539	0.19
64_P	122_M	0.537	0.19
200_R	217_G	0.537	0.19
116_L	119_S	0.534	0.18
45_R	193_M	0.532	0.18
42_I	156_T	0.532	0.18
94_F	121_S	0.529	0.18
155_A	210_H	0.529	0.18
90_L	151_F	0.528	0.18
58_V	206_E	0.522	0.18
204_Y	229_L	0.518	0.18
49_L	138_N	0.517	0.18
59_G	186_T	0.517	0.18
106_I	150_Y	0.517	0.18
99_E	104_Y	0.515	0.18
41_C	165_R	0.514	0.18
198_R	215_W	0.513	0.18
22_L	69_E	0.513	0.18
45_R	91_T	0.512	0.18
55_I	180_F	0.511	0.18
23_D	203_A	0.506	0.17
59_G	123_E	0.500	0.17

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2g18A	3	0.2874	10	0.971	Contact Map
3okpA	1	0.4291	9.3	0.971	Contact Map
1vykA	1	0.3465	6.7	0.973	Contact Map
3efzA	2	0.3543	4.3	0.975	Contact Map
2xciA	3	0.3819	4	0.976	Contact Map
1ucvA	1	0.2953	3.9	0.976	Contact Map
1vsrA	1	0.4134	3.7	0.976	Contact Map
3a98B	1	0.4646	3.7	0.976	Contact Map
2qmaA	2	0.311	3.3	0.977	Contact Map
4mjsA	2	0.1339	3.1	0.977	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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