GREMLIN Database
YQBS - Uncharacterized protein YqbS
UniProt: P45934 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 141 (120)
Sequences: 354 (320)
Seq/√Len: 29.2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
107_T125_E4.8191.00
88_E91_R4.2721.00
45_I49_V3.2751.00
109_F122_F3.0941.00
45_I126_T2.9201.00
47_Q100_D2.5990.99
43_E46_K2.4560.99
51_L67_I2.3730.99
52_S96_A2.3090.99
51_L63_Y2.0090.97
53_L129_G1.9960.97
89_I92_L1.9840.97
22_S45_I1.9320.96
51_L55_T1.8930.96
24_T47_Q1.7820.94
88_E95_E1.7800.94
59_A64_S1.7570.93
90_P111_I1.6560.91
59_A72_Q1.6520.91
48_F100_D1.6480.91
49_V103_I1.5840.89
21_T102_R1.4810.86
27_I51_L1.4780.85
93_I109_F1.4720.85
82_D113_K1.4410.84
24_T100_D1.4180.83
27_I47_Q1.3930.82
74_V92_L1.3810.81
24_T102_R1.3670.81
49_V124_V1.3620.80
26_K43_E1.3160.78
69_N93_I1.2970.77
56_E69_N1.2910.77
57_R70_E1.2890.76
22_S100_D1.2290.73
96_A129_G1.2080.72
89_I118_F1.2050.71
45_I103_I1.2030.71
20_E102_R1.1600.68
62_V99_Y1.1530.68
27_I34_I1.1500.68
124_V131_L1.1470.68
71_L89_I1.1260.66
86_K111_I1.1250.66
108_D121_S1.1140.65
101_D124_V1.0650.62
108_D123_T1.0640.62
108_D122_F1.0590.61
27_I32_G1.0490.61
41_G115_G1.0470.60
112_E119_R1.0440.60
19_I127_D1.0410.60
22_S102_R1.0110.58
41_G129_G1.0040.57
27_I100_D0.9970.57
13_E114_Q0.9950.56
45_I120_V0.9950.56
11_D14_D0.9810.55
104_S127_D0.9590.54
84_Y93_I0.9480.53
40_T102_R0.9390.52
21_T24_T0.9330.52
18_V104_S0.9290.51
23_Q38_I0.9190.50
46_K124_V0.9190.50
22_S34_I0.9170.50
86_K118_F0.9080.50
114_Q117_S0.8850.48
48_F99_Y0.8750.47
37_E96_A0.8720.47
40_T47_Q0.8680.47
12_I127_D0.8530.45
28_D31_N0.8530.45
56_E72_Q0.8490.45
105_A125_E0.8420.44
51_L91_R0.8370.44
42_L49_V0.8370.44
48_F101_D0.8360.44
62_V101_D0.8340.44
69_N75_L0.8280.43
20_E127_D0.8220.43
28_D75_L0.8210.43
41_G86_K0.8190.43
86_K113_K0.8120.42
94_E105_A0.8120.42
42_L46_K0.8100.42
91_R95_E0.8070.42
69_N96_A0.8070.42
45_I53_L0.8010.41
14_D127_D0.7970.41
71_L74_V0.7970.41
111_I118_F0.7960.41
28_D33_R0.7950.41
26_K37_E0.7940.41
34_I100_D0.7920.41
22_S40_T0.7850.40
47_Q102_R0.7840.40
76_A92_L0.7810.40
40_T100_D0.7720.39
22_S126_T0.7670.39
12_I114_Q0.7660.39
93_I120_V0.7640.39
70_E99_Y0.7610.38
34_I48_F0.7600.38
56_E92_L0.7600.38
14_D17_E0.7580.38
86_K116_E0.7540.38
61_S99_Y0.7520.38
49_V113_K0.7450.37
53_L83_A0.7370.37
89_I105_A0.7310.36
50_Y54_H0.7310.36
58_Y70_E0.7220.35
124_V130_T0.7210.35
24_T48_F0.7170.35
34_I83_A0.7170.35
31_N125_E0.7150.35
38_I69_N0.7100.35
55_T67_I0.7060.34
52_S69_N0.7030.34
62_V84_Y0.6920.33
58_Y65_H0.6910.33
73_D134_E0.6850.33
70_E92_L0.6830.33
23_Q26_K0.6810.33
16_S41_G0.6790.32
114_Q119_R0.6780.32
103_I113_K0.6770.32
57_R65_H0.6770.32
44_A64_S0.6710.32
69_N92_L0.6680.32
47_Q96_A0.6520.31
57_R68_G0.6510.31
55_T133_I0.6510.31
108_D119_R0.6480.30
27_I82_D0.6450.30
24_T27_I0.6440.30
29_F90_P0.6380.30
61_S73_D0.6370.30
16_S107_T0.6350.30
28_D57_R0.6330.29
94_E109_F0.6320.29
37_E102_R0.6270.29
76_A85_K0.6240.29
22_S48_F0.6240.29
103_I106_V0.6190.28
112_E121_S0.6150.28
60_Y90_P0.6110.28
42_L87_M0.6100.28
93_I98_I0.6090.28
52_S99_Y0.6090.28
24_T40_T0.5940.27
66_D70_E0.5880.27
17_E110_E0.5860.26
70_E91_R0.5840.26
60_Y118_F0.5800.26
93_I122_F0.5730.26
56_E84_Y0.5660.25
123_T132_E0.5650.25
85_K119_R0.5620.25
71_L96_A0.5610.25
87_M118_F0.5520.24
49_V81_T0.5480.24
40_T62_V0.5470.24
70_E103_I0.5470.24
32_G123_T0.5460.24
40_T43_E0.5450.24
90_P94_E0.5440.24
130_T133_I0.5440.24
67_I88_E0.5420.24
28_D101_D0.5340.23
51_L116_E0.5270.23
33_R58_Y0.5220.23
21_T100_D0.5160.22
74_V88_E0.5160.22
103_I126_T0.5140.22
40_T54_H0.5050.22
15_D18_V0.5040.22
39_I45_I0.5040.22
54_H118_F0.5000.22
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4hrzA 2 0.8085 99 0.758 Contact Map
2ia7A 1 0.7163 98.9 0.765 Contact Map
2e7gA 1 0.4965 40.3 0.931 Contact Map
1josA 1 0.4113 21.8 0.939 Contact Map
3w61A 2 0.3972 16.6 0.943 Contact Map
2zztA 2 0.4043 15.7 0.943 Contact Map
2kzfA 1 0.4397 15.3 0.944 Contact Map
3bypA 2 0.4113 14.4 0.944 Contact Map
1pa4A 1 0.3972 10.1 0.948 Contact Map
1v4eA 3 0.6596 8.9 0.949 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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