GREMLIN Database
YQBP - Uncharacterized protein YqbP
UniProt: P45932 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 219 (196)
Sequences: 277 (241)
Seq/√Len: 17.2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
182_K185_K8.2321.00
170_W180_S3.9941.00
187_W192_K3.6991.00
163_V172_L3.6461.00
168_T171_D3.4751.00
177_Y189_V3.4681.00
59_S128_E3.4631.00
161_Y176_F3.3680.99
187_W191_K3.0690.99
54_K133_E2.7710.98
204_Q207_H2.7090.97
189_V218_P2.5180.96
118_G126_D2.3030.93
96_Q107_T2.3030.93
205_P213_Q2.2440.92
60_S127_Y2.2440.92
82_I113_F2.2340.92
48_I109_S2.1380.90
163_V213_Q2.1320.90
98_L105_N2.1220.90
189_V217_I2.1110.90
204_Q208_W1.9320.85
162_T214_K1.9010.84
179_D182_K1.8810.84
161_Y167_D1.8530.83
176_F217_I1.7930.80
177_Y185_K1.7860.80
107_T136_T1.7760.80
44_E52_G1.6700.75
210_F213_Q1.6640.75
185_K189_V1.5870.71
46_T111_E1.5850.71
205_P208_W1.5640.70
187_W193_A1.5560.70
56_I106_L1.5490.69
76_P81_A1.5200.68
209_I213_Q1.5100.67
85_I110_I1.4910.66
34_N109_S1.4430.64
82_I115_Y1.4420.64
82_I127_Y1.4340.63
62_F78_P1.4100.62
21_V69_L1.3810.60
97_F131_L1.3490.58
191_K216_K1.3480.58
27_D114_S1.3390.58
120_K123_G1.3310.57
177_Y182_K1.3240.57
78_P123_G1.2930.55
155_K164_K1.2790.54
208_W211_P1.2690.54
33_Q38_K1.2640.53
46_T132_K1.2360.52
11_S14_K1.2170.51
60_S129_I1.2000.50
113_F127_Y1.1980.49
60_S113_F1.1940.49
189_V192_K1.1860.49
160_T214_K1.1610.47
179_D185_K1.1600.47
19_L127_Y1.1580.47
53_A133_E1.1580.47
87_K165_K1.1560.47
111_E132_K1.1510.47
12_Q136_T1.1510.47
17_L217_I1.1450.46
171_D175_K1.1280.45
207_H211_P1.1270.45
57_S164_K1.1250.45
96_Q105_N1.1200.45
114_S128_E1.1150.44
163_V210_F1.1140.44
188_K191_K1.1110.44
177_Y215_L1.0990.44
34_N46_T1.0890.43
182_K189_V1.0890.43
56_I97_F1.0870.43
19_L95_V1.0840.43
163_V205_P1.0680.42
67_S122_I1.0630.41
89_V113_F1.0600.41
12_Q107_T1.0580.41
163_V209_I1.0560.41
187_W205_P1.0550.41
61_F69_L1.0460.40
88_W95_V1.0350.40
34_N111_E1.0200.39
19_L22_L1.0170.39
46_T109_S1.0110.38
192_K216_K1.0110.38
172_L209_I1.0080.38
90_K213_Q1.0020.38
85_I113_F0.9920.37
36_S44_E0.9890.37
26_I120_K0.9880.37
88_W110_I0.9830.37
61_F126_D0.9820.37
44_E68_P0.9810.37
177_Y217_I0.9750.36
173_A186_I0.9750.36
60_S85_I0.9750.36
94_P134_Y0.9720.36
165_K179_D0.9690.36
131_L160_T0.9590.35
15_D85_I0.9570.35
24_E120_K0.9550.35
146_K156_S0.9550.35
39_V89_V0.9540.35
21_V60_S0.9540.35
11_S136_T0.9530.35
109_S132_K0.9380.34
53_A81_A0.9350.34
22_L120_K0.9330.34
58_F98_L0.9280.34
32_I138_S0.9220.33
172_L211_P0.9170.33
207_H213_Q0.9160.33
88_W134_Y0.9160.33
25_Q116_T0.9060.33
31_T52_G0.8950.32
64_K78_P0.8890.32
180_S184_R0.8860.32
97_F193_A0.8750.31
135_K181_T0.8670.31
68_P75_F0.8560.30
147_K153_P0.8500.30
114_S157_A0.8480.30
48_I88_W0.8460.30
110_I113_F0.8430.29
106_L133_E0.8380.29
186_I215_L0.8340.29
18_R22_L0.8320.29
42_F88_W0.8270.29
162_T170_W0.8200.28
169_L172_L0.8150.28
31_T114_S0.8110.28
95_V153_P0.8090.28
26_I79_E0.8050.28
62_F81_A0.8050.28
75_F81_A0.8040.27
37_V93_K0.8040.27
167_D172_L0.8010.27
62_F110_I0.8000.27
11_S48_I0.7910.27
170_W185_K0.7810.26
79_E125_R0.7810.26
31_T151_K0.7800.26
116_T126_D0.7770.26
188_K192_K0.7650.26
151_K156_S0.7640.26
17_L81_A0.7580.25
65_K69_L0.7570.25
39_V118_G0.7400.25
41_S99_I0.7390.24
111_E139_P0.7380.24
176_F186_I0.7370.24
51_P216_K0.7350.24
161_Y164_K0.7290.24
163_V167_D0.7270.24
173_A180_S0.7230.24
144_Q183_W0.7210.24
39_V42_F0.7150.23
191_K210_F0.7090.23
170_W174_G0.7040.23
85_I127_Y0.7010.23
91_S162_T0.6980.23
12_Q15_D0.6960.23
123_G217_I0.6940.23
131_L138_S0.6930.22
57_S112_V0.6890.22
48_I132_K0.6890.22
24_E52_G0.6820.22
85_I129_I0.6780.22
109_S134_Y0.6730.22
67_S111_E0.6720.22
28_I155_K0.6710.22
55_E110_I0.6710.22
39_V101_G0.6680.21
51_P68_P0.6670.21
149_K159_K0.6670.21
172_L213_Q0.6670.21
130_K168_T0.6670.21
42_F180_S0.6660.21
164_K184_R0.6640.21
168_T210_F0.6630.21
33_Q183_W0.6620.21
26_I125_R0.6600.21
28_I86_E0.6580.21
150_K159_K0.6520.21
41_S89_V0.6470.21
176_F183_W0.6460.21
66_H69_L0.6450.21
68_P142_I0.6420.20
117_E138_S0.6420.20
63_P124_D0.6400.20
53_A111_E0.6360.20
49_D126_D0.6330.20
173_A179_D0.6290.20
173_A183_W0.6280.20
55_E121_D0.6280.20
215_L218_P0.6280.20
94_P109_S0.6260.20
174_G180_S0.6190.20
112_V130_K0.6190.20
18_R33_Q0.6180.19
110_I129_I0.6160.19
187_W211_P0.6130.19
19_L139_P0.6130.19
32_I49_D0.6120.19
56_I111_E0.6110.19
166_G172_L0.6080.19
31_T55_E0.6080.19
163_V187_W0.6080.19
168_T213_Q0.6070.19
165_K208_W0.6060.19
94_P159_K0.6020.19
69_L120_K0.6010.19
16_K90_K0.5990.19
30_N133_E0.5970.19
30_N130_K0.5970.19
33_Q52_G0.5970.19
62_F123_G0.5950.19
17_L186_I0.5940.19
131_L156_S0.5940.19
78_P97_F0.5900.18
55_E132_K0.5880.18
86_E115_Y0.5880.18
78_P101_G0.5870.18
162_T184_R0.5850.18
44_E94_P0.5820.18
163_V215_L0.5810.18
32_I189_V0.5800.18
30_N127_Y0.5790.18
44_E132_K0.5770.18
192_K211_P0.5740.18
116_T120_K0.5720.18
70_A125_R0.5710.18
192_K208_W0.5710.18
207_H210_F0.5670.18
112_V143_K0.5650.18
162_T181_T0.5650.18
149_K161_Y0.5650.18
170_W178_G0.5640.18
189_V216_K0.5630.17
23_P63_P0.5590.17
45_I137_A0.5590.17
149_K152_R0.5540.17
188_K216_K0.5520.17
54_K103_K0.5500.17
21_V66_H0.5490.17
85_I152_R0.5490.17
30_N54_K0.5480.17
165_K216_K0.5470.17
78_P139_P0.5450.17
77_S106_L0.5430.17
106_L148_T0.5430.17
59_S80_N0.5430.17
30_N47_F0.5410.17
48_I134_Y0.5410.17
172_L207_H0.5410.17
66_H191_K0.5400.17
34_N48_I0.5390.17
110_I186_I0.5370.17
187_W209_I0.5360.17
77_S154_S0.5360.17
151_K191_K0.5330.16
124_D131_L0.5330.16
185_K217_I0.5330.16
94_P120_K0.5320.16
40_A134_Y0.5320.16
17_L85_I0.5320.16
98_L181_T0.5300.16
70_A137_A0.5280.16
151_K164_K0.5250.16
59_S141_K0.5220.16
66_H129_I0.5210.16
192_K210_F0.5210.16
25_Q59_S0.5200.16
89_V135_K0.5180.16
128_E175_K0.5180.16
163_V169_L0.5170.16
157_A176_F0.5140.16
93_K136_T0.5140.16
185_K218_P0.5130.16
204_Q209_I0.5120.16
61_F214_K0.5110.16
187_W204_Q0.5090.16
66_H168_T0.5060.16
96_Q129_I0.5060.16
72_Y100_T0.5050.16
114_S146_K0.5040.16
157_A182_K0.5010.15
183_W209_I0.5000.15
51_P133_E0.5000.15
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2ltfA 1 0.2329 99.3 0.812 Contact Map
2djpA 1 0.2831 99.2 0.821 Contact Map
2mkxA 1 0.2237 99.1 0.832 Contact Map
4pxvA 1 0.2192 99 0.835 Contact Map
2mpwA 1 0.347 99 0.838 Contact Map
2l9yA 1 0.4886 98.8 0.845 Contact Map
1e0gA 1 0.2146 98.8 0.849 Contact Map
4uz3A 1 0.2146 98.6 0.857 Contact Map
4ebyA 1 0.2648 98.6 0.86 Contact Map
4b8vA 2 0.242 98.5 0.862 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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