GREMLIN Database
YQBN - Uncharacterized protein YqbN
UniProt: P45930 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 149 (136)
Sequences: 173 (148)
Seq/√Len: 12.7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
90_T126_W4.1901.00
27_E45_I3.9280.99
54_I81_F3.6620.99
94_N97_A3.3710.98
98_K102_E3.1310.97
20_T33_R2.7040.93
95_F101_R2.5140.91
106_T112_V2.4480.89
16_M147_A2.3680.88
27_E43_P2.0830.80
49_I85_I2.0720.79
101_R112_V2.0410.78
90_T95_F2.0070.77
60_E84_R1.9930.77
95_F113_A1.9540.75
80_R84_R1.8870.72
14_F42_V1.8150.69
95_F116_V1.8040.69
129_K132_E1.7890.68
125_N128_N1.7690.67
31_S34_F1.7190.65
12_L31_S1.6830.63
53_R88_E1.6660.62
19_Q103_A1.6340.61
33_R122_E1.6050.59
101_R116_V1.5840.58
81_F85_I1.5830.58
44_F95_F1.5740.58
17_P103_A1.5490.57
61_N84_R1.5330.56
21_I142_D1.4710.53
25_E61_N1.4500.52
25_E45_I1.4450.51
75_E143_L1.4440.51
27_E141_E1.4410.51
33_R117_L1.4400.51
67_V70_R1.4340.51
14_F18_G1.4340.51
44_F92_Y1.4170.50
47_K88_E1.3850.48
76_L123_Y1.3630.47
46_F89_T1.3560.47
57_L61_N1.3200.45
13_S52_E1.3130.45
81_F134_N1.2870.43
38_E111_E1.2730.43
47_K138_D1.2300.40
52_E115_R1.2230.40
49_I55_D1.1890.38
77_D138_D1.1570.37
49_I111_E1.1200.35
110_V120_G1.1170.35
111_E133_I1.0940.34
89_T134_N1.0920.34
66_N70_R1.0330.31
85_I109_P1.0230.31
84_R123_Y1.0200.30
34_F117_L1.0180.30
50_T64_Y1.0050.30
20_T103_A1.0010.30
17_P115_R0.9870.29
131_I135_G0.9760.29
98_K107_E0.9730.28
95_F103_A0.9650.28
108_D111_E0.9530.28
90_T116_V0.9460.27
66_N69_G0.9360.27
146_A149_N0.9340.27
114_K123_Y0.9330.27
99_E145_E0.9240.26
57_L115_R0.9170.26
43_P50_T0.9130.26
56_E142_D0.9130.26
120_G136_F0.8990.25
56_E94_N0.8870.25
41_V44_F0.8850.25
18_G26_V0.8830.25
60_E123_Y0.8810.25
11_D97_A0.8800.25
96_K109_P0.8760.25
14_F31_S0.8710.24
18_G127_L0.8710.24
17_P104_Y0.8710.24
101_R113_A0.8650.24
73_V79_Q0.8590.24
26_V46_F0.8570.24
58_E97_A0.8520.24
86_A97_A0.8490.24
81_F106_T0.8460.23
100_L104_Y0.8460.23
63_T141_E0.8400.23
70_R73_V0.8390.23
37_K41_V0.8350.23
43_P102_E0.8340.23
11_D69_G0.8300.23
135_G146_A0.8290.23
32_K138_D0.8190.22
21_I25_E0.8120.22
11_D113_A0.8110.22
42_V76_L0.8100.22
77_D90_T0.8070.22
83_A114_K0.8070.22
37_K132_E0.8000.22
44_F117_L0.7980.22
84_R110_V0.7940.22
61_N120_G0.7910.21
28_V31_S0.7860.21
13_S83_A0.7820.21
31_S117_L0.7760.21
86_A127_L0.7750.21
26_V129_K0.7470.20
95_F112_V0.7470.20
16_M76_L0.7420.20
30_I68_K0.7420.20
63_T145_E0.7370.20
108_D130_A0.7350.20
16_M78_S0.7330.19
49_I143_L0.7300.19
20_T104_Y0.7250.19
89_T136_F0.7210.19
75_E131_I0.7210.19
47_K142_D0.7100.19
80_R128_N0.7090.19
24_E147_A0.7080.19
31_S39_G0.7050.19
81_F101_R0.7030.19
28_V46_F0.7030.19
82_Y142_D0.7030.19
90_T144_E0.7020.19
141_E145_E0.7000.18
46_F80_R0.6970.18
43_P88_E0.6820.18
58_E136_F0.6810.18
87_V105_K0.6750.18
43_P54_I0.6730.18
110_V129_K0.6700.18
12_L106_T0.6650.17
19_Q106_T0.6630.17
68_K102_E0.6610.17
125_N137_D0.6570.17
121_G130_A0.6560.17
58_E120_G0.6540.17
19_Q91_V0.6530.17
43_P47_K0.6510.17
85_I89_T0.6500.17
55_D114_K0.6490.17
20_T117_L0.6480.17
101_R108_D0.6340.16
108_D113_A0.6290.16
77_D145_E0.6260.16
18_G46_F0.6260.16
30_I39_G0.6260.16
49_I54_I0.6120.16
26_V128_N0.6120.16
20_T136_F0.6070.16
34_F86_A0.6070.16
73_V85_I0.6070.16
45_I136_F0.6040.16
61_N147_A0.6030.16
66_N97_A0.6020.16
22_E45_I0.5980.15
16_M109_P0.5960.15
137_D146_A0.5950.15
40_N67_V0.5940.15
13_S74_K0.5910.15
139_D144_E0.5870.15
38_E145_E0.5840.15
100_L112_V0.5800.15
99_E123_Y0.5800.15
137_D145_E0.5710.15
56_E127_L0.5710.15
44_F109_P0.5680.15
62_T74_K0.5490.14
68_K123_Y0.5480.14
63_T111_E0.5410.14
45_I56_E0.5400.14
38_E46_F0.5390.14
72_R85_I0.5390.14
73_V133_I0.5390.14
32_K92_Y0.5380.14
48_A129_K0.5360.14
66_N71_G0.5360.14
15_F122_E0.5350.14
66_N131_I0.5330.14
84_R87_V0.5310.14
54_I90_T0.5280.14
99_E142_D0.5270.14
21_I27_E0.5250.14
42_V147_A0.5250.14
19_Q144_E0.5220.14
78_S99_E0.5210.14
60_E99_E0.5200.13
46_F130_A0.5190.13
120_G129_K0.5180.13
12_L112_V0.5160.13
51_T54_I0.5140.13
82_Y98_K0.5120.13
98_K126_W0.5120.13
55_D138_D0.5120.13
57_L147_A0.5090.13
24_E91_V0.5090.13
50_T120_G0.5080.13
81_F89_T0.5040.13
83_A124_A0.5000.13
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3kluA 1 0.7919 100 0.195 Contact Map
3j8bE 1 0.4698 7.4 0.958 Contact Map
1g5zA 2 0.5436 5.6 0.96 Contact Map
4dvyP 1 0.8389 4.9 0.961 Contact Map
1y4sA 2 0 4.7 0.961 Contact Map
1yjgA 2 0.4966 4.7 0.961 Contact Map
2kdoA 1 0.7584 4.6 0.962 Contact Map
3w8iB 1 0.3624 3.9 0.963 Contact Map
3pmkN 1 0.2013 3.9 0.963 Contact Map
1t95A 1 0.6644 3.9 0.963 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0055 seconds.