YQAS - BACSU - GREMLIN Contacts

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YQAS - Uncharacterized protein YqaS

UniProt:	P45915	Sequences: MVDKHIQAYKDYAKGMKYKDLAEKYGVSVNTIKSWKQRHGWQRKKGAPLKKGVHTKKVGAPLGNKNALGNNGGAPKGNQNAVTHGFFSKFLPEETLSIMEGIQERSPVDMIWDQIQIQYAAIIRAQKIMFVSDKQEMIKELKKKKSVLSETNEVEEEEFEFQFSWDRHATFLNAQSRAMAELRNLIKQFDELAHSEDERRLKLEHMRLNINKKKIEIEELTEEDKPFEITIVNKGDDSD	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	239 (214)
Sequences:	223 (176)
Seq/√Len:	12.0

BACSU - YQAS YJCR

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
145_K	156_E	4.475	1.00
138_I	167_R	3.997	0.99
18_Y	33_K	3.603	0.99
34_S	38_R	3.544	0.98
205_H	209_N	3.523	0.98
18_Y	30_N	3.488	0.98
212_K	216_E	3.402	0.98
29_V	33_K	2.894	0.95
30_N	33_K	2.615	0.91
136_E	167_R	2.504	0.89
74_A	80_N	2.381	0.86
19_K	30_N	2.223	0.82
118_Q	176_S	2.131	0.79
12_Y	15_G	2.113	0.79
8_A	12_Y	2.101	0.78
143_K	158_E	1.967	0.73
8_A	16_M	1.949	0.73
8_A	15_G	1.905	0.71
31_T	38_R	1.901	0.71
189_F	202_K	1.885	0.70
79_Q	82_V	1.856	0.69
21_L	32_I	1.801	0.66
18_Y	29_V	1.790	0.66
202_K	205_H	1.777	0.65
206_M	209_N	1.773	0.65
216_E	220_L	1.754	0.64
189_F	206_M	1.731	0.63
136_E	161_F	1.726	0.63
202_K	206_M	1.714	0.62
19_K	33_K	1.710	0.62
5_H	39_H	1.699	0.62
31_T	34_S	1.674	0.60
6_I	10_K	1.644	0.59
138_I	161_F	1.638	0.59
203_L	209_N	1.633	0.58
12_Y	34_S	1.628	0.58
56_K	60_A	1.625	0.58
105_R	113_D	1.593	0.57
18_Y	37_Q	1.584	0.56
33_K	38_R	1.562	0.55
56_K	61_P	1.536	0.54
169_A	176_S	1.536	0.54
25_Y	39_H	1.534	0.54
142_K	158_E	1.528	0.53
118_Q	179_M	1.514	0.53
33_K	37_Q	1.507	0.52
30_N	37_Q	1.506	0.52
9_Y	34_S	1.490	0.51
203_L	206_M	1.469	0.50
22_A	32_I	1.453	0.50
67_A	70_N	1.445	0.49
12_Y	30_N	1.432	0.48
161_F	167_R	1.419	0.48
162_Q	165_W	1.417	0.48
19_K	53_V	1.412	0.47
30_N	34_S	1.401	0.47
5_H	9_Y	1.389	0.46
176_S	179_M	1.389	0.46
19_K	38_R	1.387	0.46
18_Y	34_S	1.383	0.46
15_G	39_H	1.378	0.46
18_Y	42_Q	1.353	0.45
11_D	28_S	1.352	0.44
21_L	25_Y	1.330	0.43
193_A	206_M	1.319	0.43
9_Y	12_Y	1.310	0.42
8_A	39_H	1.310	0.42
52_G	55_T	1.293	0.42
25_Y	33_K	1.291	0.41
8_A	17_K	1.284	0.41
175_Q	178_A	1.267	0.40
82_V	88_S	1.254	0.40
16_M	24_K	1.252	0.40
34_S	39_H	1.233	0.39
137_M	140_E	1.231	0.39
212_K	217_I	1.214	0.38
205_H	213_K	1.201	0.37
202_K	209_N	1.183	0.36
29_V	34_S	1.169	0.36
121_A	175_Q	1.161	0.35
201_L	214_K	1.152	0.35
33_K	36_K	1.150	0.35
110_M	114_Q	1.148	0.35
33_K	42_Q	1.141	0.34
12_Y	18_Y	1.140	0.34
19_K	29_V	1.133	0.34
189_F	193_A	1.125	0.34
18_Y	36_K	1.121	0.33
5_H	14_K	1.116	0.33
9_Y	32_I	1.109	0.33
15_G	30_N	1.099	0.33
86_F	102_I	1.082	0.32
7_Q	16_M	1.069	0.31
215_I	221_T	1.069	0.31
24_K	38_R	1.063	0.31
15_G	34_S	1.059	0.31
209_N	213_K	1.052	0.30
12_Y	33_K	1.042	0.30
17_K	34_S	1.022	0.29
190_D	194_H	1.018	0.29
24_K	33_K	1.015	0.29
5_H	25_Y	1.005	0.29
7_Q	11_D	1.003	0.28
21_L	35_W	1.002	0.28
65_K	68_L	0.998	0.28
9_Y	14_K	0.990	0.28
12_Y	39_H	0.982	0.28
19_K	34_S	0.980	0.27
59_G	64_N	0.977	0.27
142_K	160_E	0.970	0.27
5_H	12_Y	0.966	0.27
34_S	47_A	0.961	0.27
17_K	33_K	0.959	0.27
137_M	161_F	0.955	0.26
46_G	53_V	0.954	0.26
16_M	30_N	0.950	0.26
47_A	54_H	0.942	0.26
201_L	209_N	0.936	0.26
66_N	69_G	0.936	0.26
204_E	214_K	0.933	0.26
207_R	211_N	0.932	0.26
8_A	11_D	0.932	0.26
47_A	53_V	0.931	0.26
215_I	222_E	0.930	0.26
5_H	36_K	0.917	0.25
218_E	221_T	0.910	0.25
162_Q	166_D	0.907	0.25
28_S	31_T	0.895	0.24
73_G	80_N	0.893	0.24
81_A	177_R	0.893	0.24
18_Y	38_R	0.890	0.24
17_K	38_R	0.884	0.24
137_M	158_E	0.880	0.24
14_K	39_H	0.871	0.23
136_E	140_E	0.871	0.23
203_L	213_K	0.871	0.23
5_H	33_K	0.870	0.23
23_E	26_G	0.866	0.23
32_I	35_W	0.864	0.23
19_K	42_Q	0.862	0.23
36_K	42_Q	0.860	0.23
18_Y	53_V	0.852	0.23
11_D	19_K	0.851	0.23
210_I	214_K	0.851	0.23
24_K	34_S	0.850	0.23
98_I	107_P	0.849	0.23
160_E	165_W	0.839	0.22
111_I	192_L	0.838	0.22
18_Y	25_Y	0.838	0.22
19_K	28_S	0.837	0.22
11_D	18_Y	0.836	0.22
8_A	34_S	0.835	0.22
33_K	53_V	0.832	0.22
195_S	203_L	0.827	0.22
146_S	155_E	0.827	0.22
69_G	75_P	0.827	0.22
15_G	18_Y	0.824	0.22
6_I	9_Y	0.822	0.22
27_V	32_I	0.820	0.22
18_Y	54_H	0.820	0.22
212_K	215_I	0.820	0.22
189_F	203_L	0.813	0.21
187_K	191_E	0.809	0.21
10_K	13_A	0.804	0.21
8_A	18_Y	0.803	0.21
22_A	36_K	0.801	0.21
9_Y	13_A	0.799	0.21
82_V	87_F	0.797	0.21
31_T	47_A	0.789	0.21
193_A	203_L	0.788	0.20
6_I	14_K	0.786	0.20
35_W	39_H	0.782	0.20
208_L	213_K	0.781	0.20
34_S	46_G	0.778	0.20
18_Y	27_V	0.777	0.20
221_T	226_P	0.773	0.20
138_I	160_E	0.766	0.20
30_N	54_H	0.763	0.20
16_M	20_D	0.762	0.20
53_V	56_K	0.761	0.20
196_E	207_R	0.757	0.19
11_D	39_H	0.756	0.19
144_K	155_E	0.755	0.19
158_E	161_F	0.755	0.19
59_G	66_N	0.753	0.19
206_M	213_K	0.753	0.19
24_K	29_V	0.752	0.19
121_A	172_L	0.748	0.19
154_V	157_E	0.743	0.19
118_Q	175_Q	0.742	0.19
193_A	202_K	0.741	0.19
171_F	179_M	0.738	0.19
33_K	45_K	0.736	0.19
121_A	124_R	0.735	0.19
167_R	170_T	0.728	0.19
12_Y	31_T	0.725	0.19
63_G	66_N	0.724	0.18
5_H	15_G	0.721	0.18
38_R	47_A	0.720	0.18
17_K	20_D	0.718	0.18
139_K	163_F	0.715	0.18
38_R	46_G	0.709	0.18
129_M	169_A	0.709	0.18
62_L	211_N	0.707	0.18
114_Q	181_E	0.707	0.18
24_K	45_K	0.705	0.18
48_P	51_K	0.703	0.18
46_G	49_L	0.702	0.18
67_A	73_G	0.700	0.18
133_D	136_E	0.695	0.18
129_M	175_Q	0.693	0.18
116_Q	120_A	0.687	0.17
137_M	167_R	0.685	0.17
108_V	189_F	0.683	0.17
173_N	185_L	0.682	0.17
122_I	178_A	0.676	0.17
51_K	54_H	0.674	0.17
219_E	223_E	0.672	0.17
5_H	8_A	0.671	0.17
137_M	142_K	0.668	0.17
52_G	59_G	0.663	0.17
52_G	56_K	0.662	0.17
222_E	226_P	0.661	0.17
215_I	220_L	0.660	0.17
191_E	195_S	0.656	0.17
129_M	176_S	0.652	0.16
79_Q	88_S	0.650	0.16
25_Y	29_V	0.650	0.16
28_S	34_S	0.645	0.16
4_K	13_A	0.639	0.16
17_K	28_S	0.639	0.16
87_F	119_Y	0.637	0.16
223_E	226_P	0.635	0.16
190_D	206_M	0.635	0.16
126_Q	175_Q	0.633	0.16
5_H	13_A	0.632	0.16
68_L	73_G	0.630	0.16
143_K	156_E	0.624	0.16
169_A	179_M	0.621	0.16
11_D	24_K	0.620	0.16
122_I	175_Q	0.618	0.15
204_E	213_K	0.617	0.15
70_N	73_G	0.612	0.15
201_L	207_R	0.611	0.15
118_Q	169_A	0.611	0.15
139_K	142_K	0.609	0.15
33_K	43_R	0.609	0.15
5_H	18_Y	0.607	0.15
5_H	34_S	0.604	0.15
108_V	202_K	0.601	0.15
145_K	155_E	0.601	0.15
33_K	47_A	0.601	0.15
25_Y	46_G	0.599	0.15
111_I	189_F	0.598	0.15
215_I	223_E	0.592	0.15
175_Q	181_E	0.590	0.15
114_Q	179_M	0.588	0.15
34_S	42_Q	0.588	0.15
11_D	25_Y	0.587	0.15
124_R	175_Q	0.585	0.15
8_A	14_K	0.582	0.15
142_K	163_F	0.581	0.15
17_K	30_N	0.579	0.14
189_F	205_H	0.579	0.14
212_K	218_E	0.577	0.14
180_A	184_N	0.577	0.14
13_A	39_H	0.575	0.14
204_E	209_N	0.572	0.14
9_Y	33_K	0.570	0.14
218_E	226_P	0.569	0.14
138_I	142_K	0.569	0.14
110_M	120_A	0.568	0.14
34_S	45_K	0.561	0.14
137_M	163_F	0.559	0.14
24_K	31_T	0.558	0.14
38_R	42_Q	0.557	0.14
14_K	32_I	0.556	0.14
9_Y	15_G	0.555	0.14
125_A	168_H	0.554	0.14
9_Y	39_H	0.553	0.14
193_A	205_H	0.552	0.14
156_E	161_F	0.551	0.14
208_L	217_I	0.551	0.14
30_N	38_R	0.546	0.14
122_I	182_L	0.546	0.14
193_A	209_N	0.543	0.14
95_T	121_A	0.541	0.14
182_L	187_K	0.541	0.14
11_D	30_N	0.537	0.13
59_G	69_G	0.536	0.13
10_K	30_N	0.533	0.13
4_K	25_Y	0.531	0.13
143_K	161_F	0.529	0.13
172_L	176_S	0.525	0.13
172_L	175_Q	0.524	0.13
151_T	154_V	0.523	0.13
8_A	53_V	0.521	0.13
11_D	38_R	0.520	0.13
97_S	101_G	0.520	0.13
64_N	67_A	0.520	0.13
63_G	77_G	0.520	0.13
180_A	183_R	0.519	0.13
129_M	178_A	0.518	0.13
67_A	74_A	0.517	0.13
219_E	224_D	0.515	0.13
132_S	138_I	0.515	0.13
29_V	38_R	0.514	0.13
213_K	217_I	0.513	0.13
121_A	176_S	0.512	0.13
96_L	113_D	0.511	0.13
141_L	145_K	0.510	0.13
146_S	157_E	0.510	0.13
3_D	17_K	0.509	0.13
57_K	61_P	0.508	0.13
84_H	176_S	0.508	0.13
31_T	54_H	0.507	0.13
6_I	16_M	0.506	0.13
28_S	44_K	0.506	0.13
10_K	31_T	0.502	0.13
112_W	131_V	0.501	0.13
22_A	37_Q	0.500	0.13

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3mzyA	1	0.2301	95.6	0.924	Contact Map
2lfwA	1	0.2636	95	0.927	Contact Map
2x48A	1	0.159	94.6	0.928	Contact Map
1tc3C	1	0.1883	94.3	0.929	Contact Map
2jn6A	1	0.364	94	0.93	Contact Map
2m8eA	1	0.1883	92.6	0.934	Contact Map
1jkoC	1	0.1548	92.4	0.934	Contact Map
1k78A	1	0.3891	92.2	0.935	Contact Map
2elhA	1	0.2552	91.1	0.936	Contact Map
3hugA	3	0.2176	90.9	0.937	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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