GREMLIN Database
YQAN - Uncharacterized protein YqaN
UniProt: P45911 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 142 (132)
Sequences: 313 (260)
Seq/√Len: 22.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
20_G29_M3.9921.00
15_Q39_K3.2671.00
15_Q31_D3.0601.00
15_Q35_S3.0131.00
31_D35_S3.0121.00
31_D39_K3.0081.00
65_V99_Y2.9420.99
97_D104_K2.9320.99
35_S39_K2.6940.99
73_V83_A2.6840.99
120_D124_S2.4840.98
100_V121_L2.4680.98
61_M104_K2.3430.97
55_I59_V2.2680.97
100_V123_V2.2040.96
5_K136_M2.1680.96
70_P83_A2.1490.95
50_R111_I1.6960.86
66_Y132_R1.6930.86
89_R126_F1.6560.84
108_N114_D1.6430.84
33_A37_Y1.6340.84
60_S138_R1.5680.81
66_Y128_S1.5650.81
107_L111_I1.5340.79
79_K88_L1.4880.77
100_V104_K1.4730.76
16_G35_S1.4730.76
73_V79_K1.4560.76
79_K82_K1.4520.75
7_T134_E1.4240.74
104_K121_L1.4100.73
81_E85_K1.3950.72
10_G65_V1.3940.72
96_V123_V1.3820.72
104_K118_V1.3340.69
18_P29_M1.2920.66
14_A116_S1.2830.66
25_G28_H1.2720.65
12_P30_R1.2570.64
46_A111_I1.2370.63
83_A88_L1.1900.60
76_S83_A1.1840.59
67_R99_Y1.1750.59
21_S24_N1.1730.59
31_D99_Y1.1690.58
63_V100_V1.1500.57
13_V16_G1.1460.57
90_P99_Y1.1320.56
54_I58_P1.1210.55
22_I25_G1.1130.55
12_P131_P1.0810.52
15_Q99_Y1.0780.52
9_Y45_V1.0760.52
31_D111_I1.0750.52
89_R119_V1.0720.52
38_F69_M1.0720.52
42_V103_V1.0570.51
107_L112_Y1.0570.51
7_T132_R1.0410.50
6_F135_V1.0390.50
35_S99_Y1.0370.49
61_M137_I1.0370.49
11_E131_P1.0310.49
23_R28_H1.0210.48
56_T113_K1.0190.48
16_G32_P0.9750.45
11_E34_K0.9500.43
21_S28_H0.9480.43
70_P92_T0.9460.43
22_I29_M0.9340.42
39_K99_Y0.9330.42
80_K129_E0.9260.42
123_V133_V0.9210.41
42_V65_V0.9200.41
64_K134_E0.9110.41
113_K117_Q0.9070.41
13_V34_K0.8930.40
70_P73_V0.8930.40
57_G93_K0.8920.40
79_K83_A0.8800.39
107_L129_E0.8750.38
21_S25_G0.8720.38
78_K82_K0.8610.38
11_E68_P0.8600.37
7_T68_P0.8570.37
99_Y112_Y0.8520.37
42_V133_V0.8520.37
67_R70_P0.8500.37
35_S102_G0.8350.36
16_G102_G0.8320.36
90_P119_V0.8120.34
62_D136_M0.8120.34
18_P24_N0.8120.34
38_F102_G0.8110.34
14_A99_Y0.8100.34
69_M84_E0.8070.34
70_P79_K0.8010.34
67_R90_P0.7810.33
112_Y116_S0.7790.32
127_Y131_P0.7680.32
73_V88_L0.7590.31
9_Y133_V0.7590.31
21_S33_A0.7510.31
14_A94_P0.7510.31
8_V106_A0.7470.30
40_Q44_L0.7470.30
14_A108_N0.7380.30
61_M80_K0.7350.30
6_F49_H0.7350.30
46_A54_I0.7320.30
7_T103_V0.7260.29
70_P88_L0.7090.28
68_P131_P0.7060.28
8_V32_P0.6930.27
62_D122_K0.6910.27
54_I112_Y0.6840.27
103_V133_V0.6830.27
37_Y58_P0.6800.27
56_T78_K0.6750.26
70_P112_Y0.6650.26
62_D138_R0.6590.26
65_V121_L0.6570.25
69_M131_P0.6520.25
29_M110_L0.6510.25
61_M127_Y0.6470.25
33_A43_A0.6440.25
6_F42_V0.6390.25
55_I77_K0.6350.24
12_P32_P0.6340.24
16_G31_D0.6310.24
66_Y126_F0.6310.24
41_Y56_T0.6290.24
31_D90_P0.6250.24
55_I129_E0.6250.24
24_N29_M0.6180.24
5_K134_E0.6140.23
21_S29_M0.6130.23
54_I113_K0.6130.23
58_P68_P0.6130.23
120_D126_F0.6110.23
60_S120_D0.6110.23
8_V103_V0.6100.23
53_T112_Y0.6080.23
95_D101_K0.6070.23
98_N101_K0.6070.23
95_D98_N0.6070.23
14_A35_S0.6070.23
71_K85_K0.6070.23
23_R29_M0.6070.23
96_V100_V0.6070.23
10_G42_V0.6050.23
95_D115_D0.5950.22
101_K115_D0.5950.22
98_N115_D0.5950.22
8_V42_V0.5900.22
46_A107_L0.5790.22
49_H86_G0.5770.22
43_A130_E0.5760.21
31_D46_A0.5760.21
56_T138_R0.5730.21
83_A92_T0.5680.21
67_R71_K0.5630.21
35_S108_N0.5620.21
15_Q111_I0.5620.21
20_G30_R0.5610.21
20_G24_N0.5580.21
72_S137_I0.5540.20
86_G90_P0.5490.20
81_E96_V0.5490.20
90_P127_Y0.5480.20
63_V126_F0.5450.20
62_D124_S0.5440.20
9_Y57_G0.5420.20
33_A52_E0.5420.20
116_S132_R0.5320.20
82_K87_L0.5300.19
66_Y130_E0.5280.19
95_D105_D0.5250.19
101_K105_D0.5250.19
98_N105_D0.5250.19
119_V131_P0.5230.19
49_H130_E0.5230.19
58_P81_E0.5220.19
16_G36_K0.5190.19
14_A93_K0.5180.19
46_A50_R0.5160.19
102_G137_I0.5160.19
28_H34_K0.5150.19
107_L118_V0.5140.19
67_R83_A0.5130.19
105_D115_D0.5120.19
13_V32_P0.5120.19
46_A83_A0.5120.19
23_R128_S0.5060.18
80_K89_R0.5060.18
13_V106_A0.5060.18
106_A135_V0.5000.18
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2h8eA 2 0.8239 100 0.475 Contact Map
3mp6A 1 0.507 33.3 0.938 Contact Map
2qv7A 2 0.3521 8.7 0.953 Contact Map
3zieA 2 0.5634 7.3 0.954 Contact Map
2qiyA 2 0.338 6.1 0.956 Contact Map
2qtpA 2 0.1831 6 0.956 Contact Map
3byqA 5 0.331 5.8 0.956 Contact Map
2iueA 1 0.6831 5 0.958 Contact Map
4b7lA 1 0.4014 4.1 0.96 Contact Map
3b47A 2 0.3803 4.1 0.96 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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