YPJH - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YPJH - Uncharacterized glycosyltransferase YpjH

UniProt:	P42982	Sequences: MRKLKIGITCYPSVGGSGIIATELGKQLAEKGHEIHFITSSIPFRLNTYHPNIHFHEVEVNQYAVFKYPPYDLTLASKIAEVAERENLDIIHAHYALPHAVCAYLAKQMLKRNIGIVTTLHGTDITVLGYDPSLKDLIRFAIESSDRVTAVSSALAAETYDLIKPEKKIETIYNFIDERVYLKKNTAAIKEKHGILPDEKVVIHVSNFRKVKRVQDVIRVFRNIAGKTKAKLLLVGDGPEKSTACELIRKYGLEDQVLMLGNQDRVEDLYSISDLKLLLSEKESFGLVLLEAMACGVPCIGTNIGGIPEVIKNNVSGFLVDVGDVTAATARAMSILEDEQLSNRFTKAAIEMLENEFSSKKIVSQYEQIYADLAEPE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	377 (346)
Sequences:	56798 (48485)
Seq/√Len:	2606.6

ECOLI - RFAG WCAL GLGA WCAI RFAB WBBK WCAC
BACSU - YPJH GLGA EPSD EPSF YTCC TUAC YQGM COTSA TUAH YKVP CGEB TAGE
HALSA - Q9HQQ0 Q9HSW1 Q9HS45 Q9HRP8 Q9HSV4 Q9HSV2 Q9HQT2 Q9HRP9
SULSO - Q97ZD3 Q97VL4 Q97XT7 Q980C8 Q97UM0 Q97V61 Q97V80 Q97UU3 Q97XT8 Q97XU2 Q7LXI2 Q97XT9 Q97XT5 Q7LXM9 Q97XT1 Q97XF6 Q7LXF8 Q97XT6 Q7LXF5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
203_I	273_S	4.657	1.00
231_K	258_L	3.737	1.00
241_K	245_C	3.364	1.00
147_R	170_E	3.277	1.00
276_K	292_A	3.108	1.00
201_V	233_L	2.980	1.00
92_H	370_Y	2.889	1.00
352_M	356_E	2.768	1.00
223_N	329_T	2.743	1.00
219_R	247_L	2.735	1.00
199_E	231_K	2.715	1.00
233_L	260_L	2.688	1.00
227_K	333_M	2.656	1.00
204_H	214_V	2.618	1.00
225_A	256_Q	2.400	1.00
156_A	160_Y	2.287	1.00
219_R	325_V	2.227	1.00
36_H	88_L	2.209	1.00
213_R	216_D	2.184	1.00
200_K	336_L	2.171	1.00
247_L	251_Y	2.121	1.00
223_N	326_T	2.076	1.00
303_N	308_P	2.070	1.00
350_I	354_E	2.070	1.00
36_H	86_E	2.062	1.00
338_D	341_L	2.039	1.00
201_V	231_K	2.033	1.00
235_V	269_L	2.002	1.00
331_R	334_S	1.998	1.00
221_F	232_L	1.968	1.00
233_L	258_L	1.964	1.00
33_H	367_E	1.951	1.00
311_I	317_G	1.948	1.00
201_V	272_I	1.924	1.00
200_K	274_D	1.923	1.00
240_E	243_T	1.922	1.00
202_V	275_L	1.914	1.00
334_S	341_L	1.887	1.00
316_S	352_M	1.855	1.00
361_K	365_Q	1.843	1.00
296_G	350_I	1.843	1.00
312_K	315_V	1.801	1.00
222_R	251_Y	1.800	1.00
342_S	346_T	1.796	1.00
303_N	321_D	1.788	1.00
153_S	156_A	1.785	1.00
318_F	331_R	1.784	1.00
92_H	119_T	1.779	1.00
321_D	327_A	1.779	1.00
334_S	338_D	1.750	1.00
31_K	364_S	1.743	1.00
147_R	369_I	1.720	1.00
217_V	232_L	1.706	1.00
36_H	56_H	1.704	1.00
333_M	337_E	1.699	1.00
175_F	359_S	1.698	1.00
213_R	281_E	1.687	1.00
276_K	297_V	1.686	1.00
150_A	169_I	1.679	1.00
156_A	171_T	1.679	1.00
249_R	254_E	1.663	1.00
153_S	309_E	1.634	1.00
312_K	352_M	1.632	1.00
221_F	230_A	1.628	1.00
205_V	266_V	1.626	1.00
118_T	145_S	1.622	1.00
341_L	344_R	1.582	1.00
217_V	277_L	1.578	1.00
367_E	371_A	1.534	1.00
327_A	331_R	1.528	1.00
156_A	169_I	1.525	1.00
324_D	327_A	1.504	1.00
318_F	334_S	1.499	1.00
315_V	348_A	1.498	1.00
27_Q	30_E	1.497	1.00
27_Q	360_K	1.492	1.00
344_R	348_A	1.490	1.00
153_S	171_T	1.473	1.00
265_R	268_D	1.472	1.00
224_I	333_M	1.466	1.00
263_Q	266_V	1.460	1.00
235_V	260_L	1.452	1.00
27_Q	363_V	1.445	1.00
237_D	241_K	1.443	1.00
31_K	367_E	1.421	1.00
211_V	282_K	1.419	1.00
312_K	316_S	1.409	1.00
22_T	26_K	1.409	1.00
216_D	325_V	1.403	1.00
201_V	274_D	1.399	1.00
301_G	307_I	1.395	1.00
215_Q	247_L	1.393	1.00
273_S	297_V	1.387	1.00
233_L	269_L	1.376	1.00
246_E	250_K	1.355	1.00
325_V	329_T	1.352	1.00
233_L	273_S	1.350	1.00
150_A	156_A	1.329	1.00
320_V	331_R	1.329	1.00
149_T	369_I	1.322	1.00
208_F	234_L	1.322	1.00
267_E	295_C	1.309	1.00
223_N	325_V	1.307	1.00
204_H	217_V	1.306	1.00
160_Y	166_E	1.305	1.00
220_V	328_A	1.292	1.00
202_V	277_L	1.292	1.00
202_V	332_A	1.286	1.00
214_V	234_L	1.282	1.00
348_A	351_E	1.278	1.00
327_A	330_A	1.268	1.00
153_S	157_A	1.258	1.00
36_H	54_H	1.254	1.00
149_T	366_Y	1.253	1.00
361_K	364_S	1.251	1.00
365_Q	368_Q	1.249	1.00
203_I	235_V	1.244	1.00
247_L	250_K	1.224	1.00
93_A	116_I	1.214	1.00
165_P	168_K	1.212	1.00
216_D	281_E	1.204	1.00
343_N	347_K	1.195	1.00
242_S	245_C	1.194	1.00
200_K	275_L	1.191	1.00
157_A	160_Y	1.185	1.00
285_F	290_L	1.182	1.00
271_S	295_C	1.165	1.00
181_Y	295_C	1.158	1.00
329_T	333_M	1.148	1.00
245_C	249_R	1.147	1.00
266_V	270_Y	1.129	1.00
278_L	289_L	1.127	1.00
289_L	307_I	1.126	1.00
242_S	246_E	1.121	1.00
346_T	349_A	1.118	1.00
215_Q	219_R	1.114	1.00
223_N	227_K	1.109	1.00
270_Y	295_C	1.108	1.00
358_S	361_K	1.106	1.00
201_V	273_S	1.105	1.00
222_R	226_G	1.104	1.00
339_E	342_S	1.101	1.00
20_I	287_L	1.098	1.00
297_V	346_T	1.097	1.00
180_V	267_E	1.095	1.00
296_G	347_K	1.095	1.00
200_K	230_A	1.085	1.00
216_D	323_G	1.085	1.00
359_S	362_I	1.084	1.00
151_V	155_L	1.082	1.00
27_Q	31_K	1.081	1.00
216_D	219_R	1.077	1.00
279_L	328_A	1.064	1.00
302_T	320_V	1.061	1.00
313_N	331_R	1.061	1.00
216_D	302_T	1.060	1.00
362_I	365_Q	1.057	1.00
320_V	328_A	1.057	1.00
301_G	319_L	1.055	1.00
351_E	354_E	1.053	1.00
150_A	159_T	1.050	1.00
341_L	345_F	1.044	1.00
347_K	351_E	1.043	1.00
335_I	345_F	1.038	1.00
278_L	288_V	1.034	1.00
281_E	323_G	1.032	1.00
29_A	32_G	1.030	1.00
151_V	174_N	1.027	1.00
203_I	269_L	1.026	1.00
330_A	334_S	1.024	1.00
121_H	287_L	1.016	1.00
267_E	271_S	1.012	1.00
219_R	251_Y	1.012	1.00
196_L	199_E	1.010	1.00
318_F	345_F	1.008	1.00
223_N	226_G	1.008	1.00
224_I	230_A	1.005	1.00
207_N	211_V	1.005	1.00
364_S	368_Q	1.004	1.00
276_K	288_V	1.002	1.00
289_L	301_G	0.992	1.00
260_L	269_L	0.990	1.00
157_A	161_D	0.990	1.00
202_V	221_F	0.989	1.00
215_Q	243_T	0.986	1.00
293_M	299_C	0.985	1.00
233_L	272_I	0.976	1.00
318_F	335_I	0.972	1.00
150_A	155_L	0.970	1.00
23_E	26_K	0.967	1.00
286_G	307_I	0.967	1.00
306_G	309_E	0.963	1.00
200_K	229_K	0.963	1.00
15_G	18_G	0.962	1.00
205_V	235_V	0.962	1.00
199_E	229_K	0.962	1.00
339_E	343_N	0.959	1.00
205_V	270_Y	0.957	1.00
248_I	253_L	0.955	1.00
116_I	145_S	0.951	1.00
181_Y	267_E	0.950	1.00
218_I	248_I	0.944	1.00
174_N	287_L	0.943	1.00
362_I	366_Y	0.942	1.00
224_I	332_A	0.942	1.00
263_Q	267_E	0.941	1.00
346_T	350_I	0.937	1.00
248_I	259_M	0.934	1.00
293_M	349_A	0.934	1.00
25_G	37_F	0.927	1.00
94_H	121_H	0.924	1.00
301_G	311_I	0.924	1.00
170_E	369_I	0.924	1.00
283_E	286_G	0.916	1.00
151_V	284_S	0.914	1.00
23_E	359_S	0.913	1.00
217_V	279_L	0.913	1.00
204_H	234_L	0.908	1.00
93_A	118_T	0.907	1.00
343_N	346_T	0.905	1.00
175_F	362_I	0.904	1.00
316_S	349_A	0.903	1.00
158_E	161_D	0.903	1.00
77_S	81_E	0.902	1.00
145_S	148_V	0.899	1.00
300_I	320_V	0.894	1.00
330_A	333_M	0.893	1.00
221_F	256_Q	0.892	1.00
305_G	308_P	0.891	1.00
289_L	299_C	0.889	1.00
209_R	239_P	0.887	1.00
345_F	348_A	0.885	1.00
224_I	336_L	0.881	1.00
292_A	297_V	0.881	1.00
243_T	246_E	0.880	1.00
216_D	328_A	0.877	1.00
231_K	256_Q	0.876	1.00
117_V	149_T	0.874	1.00
103_A	107_K	0.870	1.00
326_T	330_A	0.866	1.00
318_F	341_L	0.864	1.00
230_A	336_L	0.863	1.00
178_E	358_S	0.862	1.00
212_K	283_E	0.860	1.00
80_A	84_E	0.859	1.00
25_G	29_A	0.852	1.00
224_I	329_T	0.851	1.00
298_P	346_T	0.851	1.00
293_M	352_M	0.850	1.00
177_D	180_V	0.848	1.00
246_E	249_R	0.847	1.00
19_I	23_E	0.844	1.00
321_D	324_D	0.844	1.00
222_R	225_A	0.841	1.00
275_L	335_I	0.840	1.00
20_I	121_H	0.839	1.00
212_K	288_V	0.836	1.00
220_V	329_T	0.836	1.00
204_H	279_L	0.835	1.00
170_E	365_Q	0.834	1.00
215_Q	281_E	0.833	1.00
311_I	319_L	0.831	1.00
300_I	331_R	0.827	1.00
243_T	247_L	0.825	1.00
364_S	367_E	0.824	1.00
289_L	310_V	0.823	1.00
293_M	316_S	0.820	1.00
277_L	332_A	0.820	1.00
154_A	157_A	0.815	1.00
268_D	272_I	0.810	1.00
21_A	94_H	0.810	1.00
278_L	307_I	0.809	1.00
269_L	272_I	0.808	1.00
158_E	162_L	0.806	1.00
227_K	330_A	0.802	1.00
268_D	271_S	0.797	1.00
136_D	139_R	0.796	1.00
358_S	362_I	0.796	1.00
270_Y	297_V	0.796	1.00
219_R	222_R	0.795	1.00
149_T	172_I	0.794	1.00
117_V	147_R	0.793	1.00
20_I	119_T	0.792	1.00
219_R	223_N	0.791	1.00
172_I	369_I	0.790	1.00
203_I	270_Y	0.789	1.00
220_V	325_V	0.788	1.00
275_L	332_A	0.785	1.00
280_S	283_E	0.784	1.00
298_P	335_I	0.784	1.00
215_Q	240_E	0.783	1.00
225_A	228_T	0.777	1.00
197_P	200_K	0.777	1.00
352_M	357_F	0.776	1.00
173_Y	309_E	0.774	1.00
160_Y	169_I	0.773	1.00
23_E	27_Q	0.772	1.00
303_N	319_L	0.765	1.00
227_K	329_T	0.762	1.00
140_F	144_S	0.761	1.00
115_G	146_D	0.759	1.00
173_Y	365_Q	0.759	1.00
304_I	307_I	0.750	1.00
222_R	253_L	0.748	1.00
210_K	215_Q	0.748	1.00
73_L	77_S	0.747	1.00
359_S	363_V	0.747	1.00
208_F	241_K	0.746	1.00
345_F	349_A	0.743	1.00
82_V	86_E	0.743	1.00
31_K	360_K	0.742	1.00
313_N	316_S	0.742	1.00
248_I	257_V	0.739	1.00
204_H	232_L	0.734	1.00
23_E	177_D	0.733	1.00
248_I	251_Y	0.732	1.00
360_K	364_S	0.732	1.00
204_H	276_K	0.729	1.00
112_R	115_G	0.727	1.00
29_A	35_I	0.723	1.00
350_I	353_L	0.722	1.00
121_H	151_V	0.721	1.00
344_R	347_K	0.720	1.00
274_D	342_S	0.718	1.00
34_E	54_H	0.718	1.00
151_V	287_L	0.715	1.00
76_A	80_A	0.713	1.00
154_A	158_E	0.711	1.00
206_S	214_V	0.710	1.00
172_I	366_Y	0.710	1.00
300_I	335_I	0.707	1.00
368_Q	371_A	0.707	1.00
90_I	370_Y	0.707	1.00
15_G	207_N	0.706	1.00
366_Y	370_Y	0.705	1.00
227_K	337_E	0.704	1.00
92_H	366_Y	0.702	1.00
122_G	211_V	0.701	1.00
81_E	85_R	0.699	1.00
340_Q	344_R	0.699	1.00
173_Y	357_F	0.697	1.00
225_A	229_K	0.697	1.00
286_G	289_L	0.697	1.00
20_I	366_Y	0.697	1.00
224_I	228_T	0.695	1.00
160_Y	163_I	0.693	1.00
334_S	337_E	0.692	1.00
205_V	276_K	0.691	1.00
20_I	174_N	0.690	1.00
245_C	259_M	0.689	1.00
74_T	78_K	0.689	1.00
263_Q	269_L	0.688	1.00
36_H	40_S	0.686	1.00
93_A	99_H	0.683	1.00
285_F	357_F	0.681	1.00
19_I	22_T	0.681	1.00
278_L	286_G	0.680	1.00
202_V	230_A	0.679	1.00
77_S	80_A	0.679	1.00
302_T	328_A	0.677	1.00
200_K	339_E	0.675	1.00
136_D	140_F	0.674	1.00
210_K	281_E	0.674	1.00
326_T	329_T	0.668	1.00
290_L	357_F	0.667	1.00
31_K	363_V	0.659	1.00
308_P	319_L	0.658	1.00
184_K	271_S	0.654	1.00
335_I	342_S	0.651	1.00
24_L	366_Y	0.650	1.00
206_S	212_K	0.649	1.00
316_S	348_A	0.648	1.00
293_M	346_T	0.647	1.00
117_V	370_Y	0.646	1.00
172_I	365_Q	0.645	1.00
29_A	33_H	0.645	1.00
340_Q	343_N	0.643	1.00
349_A	352_M	0.642	1.00
311_I	316_S	0.639	1.00
177_D	181_Y	0.639	1.00
57_E	60_V	0.638	1.00
25_G	35_I	0.635	1.00
302_T	322_V	0.627	1.00
102_C	105_L	0.627	1.00
7_G	17_S	0.627	1.00
170_E	173_Y	0.626	1.00
56_H	60_V	0.625	1.00
196_L	231_K	0.625	1.00
269_L	273_S	0.625	1.00
202_V	336_L	0.623	1.00
210_K	240_E	0.622	1.00
30_E	360_K	0.620	1.00
94_H	119_T	0.619	1.00
338_D	342_S	0.617	1.00
221_F	224_I	0.617	1.00
178_E	354_E	0.615	1.00
7_G	21_A	0.614	1.00
314_N	334_S	0.611	1.00
276_K	299_C	0.611	1.00
208_F	214_V	0.611	1.00
313_N	318_F	0.610	1.00
104_Y	107_K	0.610	1.00
90_I	117_V	0.608	1.00
88_L	114_I	0.608	1.00
320_V	327_A	0.608	1.00
212_K	280_S	0.608	1.00
213_R	279_L	0.607	1.00
277_L	328_A	0.607	1.00
52_N	55_F	0.604	1.00
82_V	85_R	0.603	1.00
71_Y	75_L	0.603	1.00
220_V	332_A	0.602	1.00
154_A	308_P	0.601	1.00
83_A	88_L	0.598	1.00
150_A	171_T	0.598	1.00
228_T	337_E	0.598	1.00
26_K	51_P	0.597	1.00
19_I	263_Q	0.592	1.00
240_E	244_A	0.592	1.00
218_I	257_V	0.590	1.00
201_V	269_L	0.589	1.00
363_V	367_E	0.589	1.00
26_K	30_E	0.588	1.00
32_G	367_E	0.587	1.00
213_R	323_G	0.586	1.00
238_G	241_K	0.585	1.00
203_I	276_K	0.585	1.00
200_K	342_S	0.584	1.00
119_T	366_Y	0.583	1.00
195_I	233_L	0.582	1.00
279_L	302_T	0.581	1.00
347_K	350_I	0.581	1.00
275_L	300_I	0.580	1.00
300_I	332_A	0.579	1.00
288_V	292_A	0.576	1.00
179_R	182_L	0.575	1.00
348_A	352_M	0.574	1.00
56_H	59_E	0.572	1.00
218_I	244_A	0.570	1.00
156_A	166_E	0.569	1.00
91_I	114_I	0.568	1.00
266_V	269_L	0.567	1.00
178_E	294_A	0.566	1.00
139_R	143_E	0.566	1.00
95_Y	98_P	0.565	1.00
200_K	203_I	0.564	1.00
182_L	271_S	0.563	1.00
33_H	371_A	0.563	1.00
29_A	52_N	0.561	1.00
121_H	174_N	0.561	1.00
152_S	155_L	0.560	1.00
270_Y	288_V	0.560	1.00
155_L	158_E	0.560	1.00
49_Y	52_N	0.560	1.00
274_D	339_E	0.559	1.00
88_L	91_I	0.558	1.00
93_A	103_A	0.557	1.00
217_V	221_F	0.557	1.00
245_C	248_I	0.556	1.00
164_K	167_K	0.555	1.00
132_P	135_K	0.555	1.00
214_V	240_E	0.553	1.00
292_A	299_C	0.553	1.00
248_I	254_E	0.552	1.00
72_D	75_L	0.552	1.00
215_Q	244_A	0.552	1.00
68_Y	71_Y	0.551	1.00
216_D	220_V	0.550	1.00
286_G	290_L	0.550	1.00
293_M	353_L	0.550	1.00
17_S	95_Y	0.548	1.00
244_A	247_L	0.547	1.00
225_A	230_A	0.547	1.00
290_L	353_L	0.545	1.00
116_I	146_D	0.544	1.00
124_D	127_V	0.542	1.00
236_G	261_G	0.542	1.00
74_T	77_S	0.541	1.00
342_S	345_F	0.541	1.00
78_K	81_E	0.541	1.00
132_P	136_D	0.541	1.00
153_S	173_Y	0.539	1.00
20_I	24_L	0.537	1.00
119_T	149_T	0.537	1.00
228_T	333_M	0.537	1.00
235_V	266_V	0.536	1.00
203_I	297_V	0.536	1.00
32_G	35_I	0.535	1.00
304_I	308_P	0.534	1.00
356_E	361_K	0.533	1.00
23_E	287_L	0.533	1.00
48_T	52_N	0.530	1.00
27_Q	359_S	0.530	1.00
220_V	224_I	0.530	1.00
103_A	106_A	0.527	1.00
213_R	302_T	0.527	1.00
210_K	243_T	0.527	1.00
298_P	342_S	0.527	1.00
203_I	233_L	0.527	1.00
232_L	257_V	0.524	1.00
290_L	310_V	0.523	1.00
20_I	94_H	0.521	1.00
296_G	346_T	0.520	1.00
280_S	284_S	0.519	1.00
303_N	322_V	0.518	1.00
23_E	175_F	0.516	1.00
51_P	54_H	0.515	1.00
229_K	256_Q	0.512	1.00
38_I	82_V	0.511	1.00
173_Y	285_F	0.510	1.00
25_G	53_I	0.510	1.00
195_I	201_V	0.508	1.00
120_L	123_T	0.508	1.00
235_V	273_S	0.507	1.00
147_R	151_V	0.506	1.00
199_E	272_I	0.506	1.00
270_Y	276_K	0.502	1.00
263_Q	268_D	0.500	1.00
155_L	284_S	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2jjmA	4	0.9523	100	0.113	Contact Map
1rzuA	1	0.9788	100	0.151	Contact Map
2r60A	1	0.9894	100	0.153	Contact Map
3c48A	2	0.9708	100	0.155	Contact Map
4n9wA	1	0.9178	100	0.16	Contact Map
3froA	3	0.9788	100	0.163	Contact Map
2qzsA	1	0.9708	100	0.165	Contact Map
3okpA	1	0.9549	100	0.174	Contact Map
2iw1A	1	0.9496	100	0.18	Contact Map
2x6qA	1	0.9363	100	0.191	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0112 seconds.