GREMLIN Database
DHNA - NADH dehydrogenase
UniProt: P42974 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 509 (505)
Sequences: 1038 (592)
Seq/√Len: 26.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
454_E462_I6.3471.00
494_S497_T5.6671.00
360_I375_V5.1561.00
117_E147_N4.2921.00
105_Q109_D3.8171.00
349_D371_N3.7761.00
122_S150_H3.7321.00
446_T480_C3.6861.00
409_I436_V3.5981.00
393_Y400_V3.4921.00
33_T36_D3.3131.00
410_T416_N3.2601.00
124_I152_M3.2291.00
464_D468_A3.1601.00
321_V409_I3.1241.00
395_L398_V3.0351.00
392_L400_V3.0331.00
421_V428_E2.9961.00
386_E390_K2.9841.00
26_V41_V2.9031.00
67_N74_G2.8871.00
119_H149_T2.8301.00
121_E153_I2.7871.00
37_M80_I2.6970.99
44_L89_L2.6870.99
401_V404_A2.5750.99
20_N68_R2.5620.99
287_K300_E2.5490.99
453_V471_V2.4990.99
38_L55_K2.4890.99
405_Q421_V2.4780.99
372_H399_T2.4390.99
12_N16_Q2.4340.99
28_A38_L2.4020.99
403_N424_E2.3850.99
360_I392_L2.3780.99
39_A43_E2.3620.98
45_A53_V2.3230.98
392_L398_V2.3070.98
409_I415_V2.2770.98
181_G185_M2.2100.98
21_D50_K2.1880.97
250_S259_A2.1740.97
23_V54_E2.1270.97
351_A433_L2.1250.97
25_K54_E2.1200.97
24_L66_V2.0950.97
450_E455_R2.0930.97
419_T430_H2.0520.96
259_A275_E2.0310.96
172_T179_S2.0230.96
321_V436_V2.0220.96
410_T430_H2.0170.96
483_S494_S2.0130.96
13_Q16_Q2.0080.96
118_Y194_M2.0020.96
19_E99_R1.9940.96
42_D53_V1.9730.95
295_F474_L1.9730.95
265_L492_M1.9710.95
378_F423_R1.9630.95
410_T419_T1.9510.95
208_P233_R1.9440.95
115_S147_N1.8970.94
241_F273_V1.8850.94
114_I194_M1.8560.93
75_V142_S1.8440.93
211_V311_I1.8370.93
271_E274_K1.8300.93
36_D80_I1.8120.93
80_I157_A1.8090.93
103_V140_M1.7930.92
101_P104_D1.7920.92
25_K56_A1.7870.92
108_I112_K1.7830.92
103_V108_I1.7720.92
254_F492_M1.7380.91
17_L99_R1.7070.90
20_N69_V1.7070.90
371_N434_Q1.6940.90
471_V474_L1.6900.90
66_V75_V1.6790.89
41_V64_F1.6770.89
106_K202_E1.6610.89
54_E57_E1.6520.89
349_D372_H1.6470.88
288_R298_E1.6310.88
421_V426_G1.6120.87
465_K482_D1.6110.87
324_P408_E1.6060.87
321_V353_I1.6040.87
159_K163_E1.5800.86
320_N327_Q1.5750.86
33_T157_A1.5750.86
222_S255_I1.5590.85
160_A164_S1.5570.85
79_G152_M1.5460.85
69_V75_V1.5340.84
235_G281_M1.5280.84
71_E74_G1.5260.84
28_A57_E1.5260.84
206_K279_D1.5260.84
287_K298_E1.5160.84
166_N413_Q1.5160.84
121_E165_K1.5010.83
65_S76_T1.4970.83
214_V312_L1.4940.83
272_H276_Y1.4910.83
95_Q139_N1.4760.82
18_I24_L1.4750.82
416_N430_H1.4710.82
27_S61_T1.4690.82
31_D34_S1.4630.82
9_A12_N1.4620.81
107_V191_L1.4610.81
32_D35_K1.4380.80
376_L431_V1.4350.80
24_L67_N1.4310.80
154_D157_A1.4290.80
389_Q393_Y1.4260.80
310_V474_L1.4210.80
15_M18_I1.4170.79
291_K471_V1.4130.79
221_A273_V1.4110.79
24_L28_A1.4080.79
379_A383_K1.4080.79
349_D432_E1.3790.77
68_R71_E1.3750.77
8_K11_L1.3740.77
258_K271_E1.3690.77
26_V38_L1.3660.77
38_L57_E1.3600.76
407_K421_V1.3550.76
127_T156_A1.3410.75
408_E419_T1.3360.75
38_L42_D1.3350.75
266_A269_L1.3310.75
40_L89_L1.3310.75
67_N75_V1.3270.75
20_N51_I1.3260.75
292_K296_E1.3240.74
290_E298_E1.3230.74
141_M148_I1.3210.74
298_E304_V1.3190.74
186_T189_E1.2970.73
8_K43_E1.2940.73
422_D425_T1.2930.73
26_V55_K1.2870.72
380_P403_N1.2820.72
496_A499_A1.2790.72
67_N72_D1.2780.72
206_K281_M1.2760.72
101_P140_M1.2660.71
254_F258_K1.2480.70
41_V53_V1.2450.70
289_L448_W1.2420.70
475_F505_Y1.2420.70
59_N75_V1.2350.69
42_D46_S1.2350.69
453_V470_S1.2340.69
120_F175_L1.2320.69
69_V73_T1.2310.69
409_I438_V1.2270.69
6_N9_A1.2210.68
67_N71_E1.2210.68
57_E61_T1.2170.68
160_A163_E1.2090.67
393_Y402_K1.2070.67
67_N70_G1.2040.67
68_R73_T1.2030.67
67_N73_T1.1990.67
68_R72_D1.1960.67
123_Y161_E1.1960.67
392_L395_L1.1940.66
35_K38_L1.1900.66
412_D416_N1.1880.66
321_V438_V1.1800.66
296_E304_V1.1790.65
320_N336_Y1.1770.65
38_L53_V1.1730.65
96_V143_V1.1710.65
28_A61_T1.1680.65
467_G501_G1.1670.65
399_T429_K1.1640.64
22_I66_V1.1610.64
166_N414_S1.1520.64
20_N97_S1.1380.63
167_I174_Y1.1370.63
237_V299_L1.1360.62
27_S57_E1.1330.62
108_I140_M1.1320.62
6_N82_L1.1260.62
393_Y399_T1.1210.61
286_A474_L1.1170.61
22_I68_R1.1140.61
489_I492_M1.1120.61
209_F235_G1.1100.61
6_N436_V1.1080.61
314_T480_C1.1030.60
32_D36_D1.1030.60
286_A448_W1.0990.60
213_V492_M1.0960.60
282_N313_S1.0930.59
320_N331_N1.0920.59
246_L266_A1.0900.59
126_L132_P1.0890.59
286_A289_L1.0850.59
66_V152_M1.0840.59
28_A56_A1.0840.59
317_R447_E1.0760.58
43_E46_S1.0750.58
399_T402_K1.0710.58
153_I165_K1.0670.58
95_Q101_P1.0670.58
364_I395_L1.0670.58
419_T428_E1.0660.58
39_A42_D1.0650.57
71_E75_V1.0630.57
38_L49_S1.0530.57
42_D52_S1.0520.56
127_T154_D1.0460.56
449_L455_R1.0450.56
122_S152_M1.0450.56
404_A420_Y1.0410.56
23_V52_S1.0410.56
47_M99_R1.0400.56
379_A458_M1.0370.55
65_S73_T1.0360.55
108_I144_L1.0350.55
73_T96_V1.0340.55
130_N134_V1.0330.55
258_K275_E1.0320.55
312_L455_R1.0270.55
45_A51_I1.0210.54
70_G74_G1.0200.54
26_V53_V1.0190.54
13_Q17_L1.0140.54
239_E285_R1.0120.54
273_V278_I1.0100.53
209_F281_M1.0020.53
383_K458_M1.0010.53
22_I75_V1.0000.53
58_L61_T0.9980.52
296_E306_K0.9960.52
103_V191_L0.9930.52
18_I67_N0.9920.52
109_D474_L0.9910.52
254_F265_L0.9910.52
310_V425_T0.9890.52
19_E24_L0.9890.52
216_G238_A0.9890.52
42_D55_K0.9830.51
17_L95_Q0.9760.51
73_T143_V0.9750.51
12_N18_I0.9750.51
12_N49_S0.9750.51
24_L51_I0.9670.50
463_V494_S0.9660.50
5_A32_D0.9650.50
95_Q143_V0.9640.50
456_N482_D0.9630.50
16_Q50_K0.9600.50
210_D227_T0.9560.49
467_G497_T0.9560.49
463_V483_S0.9540.49
329_F412_D0.9530.49
199_D202_E0.9530.49
270_E274_K0.9520.49
15_M93_L0.9520.49
295_F310_V0.9500.49
25_K28_A0.9500.49
33_T51_I0.9430.48
109_D112_K0.9410.48
25_K67_N0.9390.48
20_N113_K0.9390.48
29_G451_G0.9360.48
188_E282_N0.9360.48
313_S320_N0.9340.48
6_N19_E0.9310.48
335_A369_I0.9310.48
249_M263_P0.9300.47
64_F392_L0.9270.47
25_K65_S0.9260.47
467_G494_S0.9250.47
454_E470_S0.9240.47
36_D53_V0.9220.47
321_V458_M0.9170.46
60_R161_E0.9160.46
130_N184_R0.9110.46
114_I148_I0.9110.46
349_D434_Q0.9100.46
13_Q33_T0.9100.46
53_V56_A0.9010.45
468_A505_Y0.8990.45
55_K61_T0.8940.45
455_R458_M0.8920.45
123_Y174_Y0.8900.44
181_G190_I0.8880.44
140_M143_V0.8880.44
417_G430_H0.8870.44
103_V107_V0.8850.44
208_P294_L0.8840.44
49_S410_T0.8830.44
17_L75_V0.8820.44
36_D39_A0.8810.44
422_D429_K0.8810.44
420_Y429_K0.8780.44
101_P144_L0.8750.43
291_K295_F0.8750.43
452_T480_C0.8740.43
15_M44_L0.8740.43
28_A58_L0.8740.43
15_M82_L0.8730.43
207_E233_R0.8700.43
327_Q336_Y0.8670.43
240_R247_D0.8670.43
109_D113_K0.8660.43
140_M187_L0.8630.43
44_L168_M0.8590.42
167_I308_K0.8570.42
51_I55_K0.8570.42
484_A497_T0.8560.42
56_A61_T0.8470.41
466_H501_G0.8470.41
28_A59_N0.8420.41
337_C341_D0.8410.41
58_L123_Y0.8410.41
15_M90_V0.8390.41
21_D31_D0.8380.41
127_T209_F0.8360.41
463_V482_D0.8340.40
144_L429_K0.8330.40
281_M301_N0.8330.40
20_N67_N0.8330.40
351_A418_I0.8300.40
103_V187_L0.8270.40
13_Q54_E0.8250.40
51_I93_L0.8220.40
451_G474_L0.8210.39
462_I465_K0.8200.39
461_I476_A0.8190.39
456_N460_E0.8190.39
24_L68_R0.8140.39
409_I416_N0.8140.39
55_K59_N0.8130.39
105_Q386_E0.8110.39
32_D45_A0.8040.38
73_T76_T0.8030.38
43_E142_S0.8020.38
104_D109_D0.8010.38
24_L95_Q0.7970.38
38_L59_N0.7970.38
68_R75_V0.7960.38
20_N28_A0.7950.38
42_D293_D0.7930.38
12_N313_S0.7920.37
19_E73_T0.7910.37
58_L76_T0.7910.37
27_S63_S0.7900.37
255_I400_V0.7900.37
28_A35_K0.7880.37
23_V67_N0.7860.37
5_A12_N0.7860.37
19_E67_N0.7830.37
337_C340_C0.7830.37
90_V93_L0.7780.36
38_L61_T0.7780.36
35_K42_D0.7770.36
117_E149_T0.7760.36
376_L379_A0.7750.36
59_N76_T0.7730.36
107_V111_V0.7730.36
5_A50_K0.7730.36
17_L101_P0.7720.36
19_E95_Q0.7710.36
95_Q99_R0.7700.36
404_A407_K0.7700.36
19_E74_G0.7700.36
292_K295_F0.7690.36
359_G377_E0.7690.36
236_V277_D0.7670.36
456_N496_A0.7670.36
75_V96_V0.7660.36
28_A54_E0.7650.36
35_K54_E0.7650.36
66_V124_I0.7640.36
101_P191_L0.7640.36
9_A42_D0.7600.35
22_I67_N0.7590.35
25_K57_E0.7570.35
24_L73_T0.7560.35
42_D45_A0.7490.34
210_D308_K0.7490.34
79_G124_I0.7490.34
43_E82_L0.7460.34
28_A55_K0.7430.34
56_A76_T0.7430.34
9_A69_V0.7420.34
267_A270_E0.7420.34
65_S71_E0.7390.34
295_F471_V0.7370.34
311_I477_A0.7360.34
39_A58_L0.7360.34
17_L46_S0.7330.33
66_V69_V0.7330.33
100_P114_I0.7330.33
75_V143_V0.7310.33
25_K61_T0.7310.33
183_G190_I0.7290.33
377_E423_R0.7280.33
24_L45_A0.7280.33
37_M157_A0.7270.33
320_N436_V0.7250.33
75_V239_E0.7250.33
214_V228_A0.7240.33
18_I73_T0.7240.33
348_K353_I0.7240.33
375_V378_F0.7230.33
18_I103_V0.7220.33
124_I154_D0.7220.33
19_E101_P0.7200.33
320_N330_K0.7190.33
199_D301_N0.7170.32
21_D29_G0.7170.32
35_K427_E0.7140.32
129_H249_M0.7130.32
410_T417_G0.7130.32
6_N72_D0.7120.32
54_E72_D0.7120.32
281_M313_S0.7120.32
4_D87_T0.7120.32
469_T476_A0.7070.32
38_L76_T0.7070.32
7_I292_K0.7070.32
17_L51_I0.7070.32
360_I379_A0.7050.32
206_K209_F0.7030.31
294_L306_K0.7030.31
456_N471_V0.7030.31
214_V297_L0.7020.31
394_S398_V0.7020.31
9_A26_V0.7020.31
389_Q400_V0.7010.31
23_V53_V0.6990.31
7_I37_M0.6990.31
19_E97_S0.6990.31
42_D76_T0.6980.31
9_A35_K0.6970.31
30_E236_V0.6960.31
7_I16_Q0.6950.31
138_L150_H0.6940.31
8_K47_M0.6930.31
364_I394_S0.6930.31
270_E282_N0.6910.31
20_N72_D0.6910.31
17_L20_N0.6900.31
19_E34_S0.6890.31
330_K336_Y0.6890.31
25_K35_K0.6880.31
119_H151_T0.6880.31
370_V374_T0.6870.30
15_M51_I0.6870.30
44_L51_I0.6850.30
12_N52_S0.6840.30
307_S310_V0.6820.30
56_A59_N0.6810.30
292_K308_K0.6810.30
129_H311_I0.6790.30
115_S118_Y0.6770.30
277_D294_L0.6760.30
32_D61_T0.6740.30
75_V294_L0.6740.30
381_E386_E0.6740.30
322_N489_I0.6730.30
174_Y179_S0.6720.30
39_A46_S0.6680.29
18_I37_M0.6660.29
122_S129_H0.6650.29
23_V69_V0.6650.29
451_G454_E0.6630.29
96_V142_S0.6610.29
65_S74_G0.6610.29
67_N76_T0.6600.29
20_N24_L0.6590.29
28_A34_S0.6580.29
184_R368_G0.6580.29
57_E443_V0.6570.29
187_L194_M0.6560.29
66_V73_T0.6550.28
24_L71_E0.6550.28
34_S61_T0.6540.28
162_V169_A0.6520.28
35_K39_A0.6520.28
19_E50_K0.6500.28
106_K109_D0.6490.28
250_S492_M0.6480.28
391_R394_S0.6470.28
22_I42_D0.6460.28
51_I298_E0.6460.28
275_E353_I0.6440.28
27_S68_R0.6430.28
17_L58_L0.6420.28
18_I22_I0.6410.28
7_I90_V0.6400.28
6_N47_M0.6400.28
254_F489_I0.6400.28
317_R347_G0.6400.28
95_Q100_P0.6390.28
6_N399_T0.6380.27
21_D54_E0.6370.27
32_D71_E0.6370.27
249_M330_K0.6350.27
42_D54_E0.6330.27
30_E485_Y0.6330.27
57_E71_E0.6310.27
154_D257_V0.6310.27
40_L43_E0.6300.27
17_L80_I0.6290.27
27_S56_A0.6280.27
43_E47_M0.6280.27
104_D107_V0.6280.27
13_Q35_K0.6280.27
307_S311_I0.6270.27
53_V69_V0.6260.27
375_V392_L0.6260.27
20_N42_D0.6250.27
163_E166_N0.6250.27
65_S70_G0.6240.27
5_A46_S0.6230.27
225_I313_S0.6230.27
36_D72_D0.6220.27
26_V44_L0.6220.27
310_V452_T0.6220.27
11_L40_L0.6220.27
227_T499_A0.6200.26
30_E42_D0.6200.26
391_R491_S0.6170.26
259_A499_A0.6140.26
351_A376_L0.6140.26
237_V286_A0.6140.26
27_S59_N0.6140.26
56_A483_S0.6130.26
26_V375_V0.6130.26
25_K31_D0.6120.26
22_I51_I0.6110.26
236_V273_V0.6100.26
123_Y496_A0.6100.26
37_M101_P0.6090.26
5_A18_I0.6090.26
12_N82_L0.6080.26
13_Q19_E0.6070.26
209_F289_L0.6070.26
28_A49_S0.6070.26
312_L446_T0.6060.26
6_N42_D0.6060.26
54_E69_V0.6050.26
101_P111_V0.6050.26
52_S424_E0.6020.25
426_G485_Y0.6010.25
69_V74_G0.6010.25
35_K46_S0.6010.25
53_V298_E0.6010.25
254_F272_H0.6000.25
6_N58_L0.5990.25
46_S49_S0.5980.25
208_P307_S0.5980.25
18_I21_D0.5960.25
316_A355_G0.5960.25
118_Y175_L0.5960.25
181_G189_E0.5940.25
362_A385_D0.5930.25
58_L71_E0.5920.25
55_K69_V0.5920.25
274_K282_N0.5910.25
15_M78_A0.5910.25
401_V420_Y0.5900.25
24_L292_K0.5900.25
21_D189_E0.5900.25
325_G328_E0.5890.25
289_L310_V0.5890.25
22_I59_N0.5890.25
96_V150_H0.5870.25
21_D49_S0.5860.24
20_N53_V0.5860.24
262_G487_Q0.5860.24
492_M496_A0.5850.24
42_D57_E0.5840.24
49_S109_D0.5840.24
69_V96_V0.5830.24
288_R452_T0.5830.24
57_E292_K0.5820.24
51_I307_S0.5820.24
259_A379_A0.5810.24
24_L53_V0.5810.24
25_K55_K0.5810.24
168_M172_T0.5810.24
6_N51_I0.5800.24
58_L63_S0.5800.24
13_Q55_K0.5800.24
68_R74_G0.5800.24
13_Q47_M0.5790.24
216_G382_L0.5770.24
36_D66_V0.5750.24
5_A9_A0.5750.24
343_P493_G0.5750.24
59_N63_S0.5740.24
362_A365_D0.5740.24
89_L370_V0.5740.24
9_A13_Q0.5730.24
31_D41_V0.5720.24
40_L51_I0.5720.24
258_K312_L0.5700.24
65_S69_V0.5700.24
244_Q487_Q0.5690.24
113_K471_V0.5680.24
56_A65_S0.5670.23
70_G453_V0.5670.23
250_S327_Q0.5660.23
322_N419_T0.5660.23
205_D301_N0.5650.23
43_E383_K0.5650.23
55_K58_L0.5650.23
35_K69_V0.5650.23
322_N485_Y0.5640.23
129_H144_L0.5640.23
14_Y44_L0.5640.23
300_E474_L0.5630.23
285_R289_L0.5620.23
30_E35_K0.5620.23
28_A41_V0.5620.23
55_K293_D0.5620.23
386_E421_V0.5610.23
479_D495_G0.5600.23
333_G340_C0.5600.23
30_E59_N0.5580.23
35_K61_T0.5580.23
36_D157_A0.5540.23
12_N67_N0.5540.23
8_K450_E0.5540.23
12_N33_T0.5540.23
50_K293_D0.5530.23
52_S72_D0.5520.23
13_Q20_N0.5520.23
331_N480_C0.5520.23
46_S61_T0.5520.23
218_P326_E0.5510.23
13_Q56_A0.5490.23
386_E447_E0.5480.22
375_V389_Q0.5480.22
46_S80_I0.5470.22
226_Y326_E0.5470.22
114_I172_T0.5460.22
33_T80_I0.5450.22
379_A405_Q0.5450.22
47_M56_A0.5450.22
46_S53_V0.5440.22
6_N46_S0.5440.22
87_T431_V0.5430.22
26_V58_L0.5430.22
5_A67_N0.5430.22
45_A66_V0.5420.22
291_K294_L0.5410.22
145_N153_I0.5400.22
357_N384_A0.5400.22
47_M51_I0.5390.22
256_S272_H0.5390.22
25_K53_V0.5380.22
52_S69_V0.5380.22
61_T71_E0.5380.22
58_L65_S0.5370.22
29_G72_D0.5370.22
25_K72_D0.5360.22
51_I67_N0.5360.22
30_E61_T0.5350.22
201_S204_A0.5340.22
482_D497_T0.5340.22
18_I49_S0.5340.22
67_N499_A0.5340.22
24_L424_E0.5320.22
159_K491_S0.5320.22
5_A13_Q0.5320.22
153_I156_A0.5310.22
16_Q23_V0.5310.22
119_H463_V0.5300.22
71_E290_E0.5300.22
336_Y481_T0.5290.21
360_I376_L0.5290.21
122_S139_N0.5280.21
38_L56_A0.5280.21
66_V258_K0.5260.21
8_K12_N0.5260.21
119_H122_S0.5240.21
295_F499_A0.5240.21
113_K191_L0.5230.21
112_K236_V0.5230.21
12_N27_S0.5220.21
19_E43_E0.5220.21
430_H436_V0.5220.21
497_T501_G0.5210.21
28_A292_K0.5210.21
7_I25_K0.5200.21
8_K14_Y0.5200.21
273_V406_T0.5200.21
156_A389_Q0.5200.21
5_A54_E0.5200.21
237_V301_N0.5190.21
447_E450_E0.5190.21
8_K32_D0.5190.21
463_V501_G0.5190.21
156_A169_A0.5190.21
31_D58_L0.5180.21
20_N54_E0.5180.21
101_P107_V0.5160.21
230_K460_E0.5160.21
226_Y337_C0.5150.21
23_V33_T0.5150.21
20_N38_L0.5140.21
220_G353_I0.5140.21
19_E71_E0.5130.21
78_A151_T0.5130.21
108_I287_K0.5130.21
20_N31_D0.5120.21
240_R269_L0.5120.21
97_S101_P0.5120.21
75_V152_M0.5110.21
221_A236_V0.5100.21
366_L493_G0.5100.21
244_Q337_C0.5090.20
64_F360_I0.5090.20
12_N254_F0.5090.20
295_F313_S0.5090.20
65_S371_N0.5080.20
236_V282_N0.5080.20
290_E293_D0.5080.20
322_N401_V0.5080.20
411_G477_A0.5080.20
275_E499_A0.5070.20
42_D80_I0.5070.20
9_A20_N0.5060.20
375_V380_P0.5060.20
239_E283_L0.5060.20
260_T264_K0.5060.20
25_K68_R0.5060.20
95_Q122_S0.5050.20
24_L38_L0.5050.20
271_E427_E0.5050.20
169_A172_T0.5050.20
27_S38_L0.5040.20
5_A76_T0.5040.20
104_D185_M0.5040.20
463_V497_T0.5030.20
185_M190_I0.5020.20
181_G186_T0.5010.20
66_V499_A0.5010.20
32_D82_L0.5010.20
260_T359_G0.5010.20
187_L191_L0.5000.20
279_D405_Q0.5000.20
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1hyuA 2 0.998 100 0.38 Contact Map
2vdcG 1 0.7701 100 0.602 Contact Map
4ylfB 1 0.8035 100 0.607 Contact Map
1gteA 4 0.8861 100 0.607 Contact Map
1fl2A 2 0.5933 100 0.625 Contact Map
2x8gA 2 0.7642 100 0.631 Contact Map
2q7vA 2 0.6012 100 0.633 Contact Map
2a87A 2 0.5992 100 0.638 Contact Map
3f8dA 2 0.6012 100 0.64 Contact Map
2q0lA 2 0.5894 100 0.642 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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