GREMLIN Database
NASD - Nitrite reductase [NAD(P)H]
UniProt: P42435 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 805 (786)
Sequences: 1345 (660)
Seq/√Len: 23.5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
262_N266_Q6.0721.00
586_K616_D6.0541.00
87_T269_I5.8911.00
651_L720_N5.3371.00
719_T722_E5.2251.00
758_S762_D4.9361.00
575_T585_D4.7261.00
90_K271_H4.4641.00
501_L507_V4.4511.00
567_M572_T4.3931.00
172_S205_L4.2881.00
80_E96_A4.2101.00
709_R712_D3.9231.00
9_V107_L3.8601.00
654_A720_N3.8201.00
781_K786_D3.7971.00
91_T99_I3.7921.00
439_S442_E3.7161.00
567_M594_M3.6401.00
774_N778_S3.5861.00
104_E271_H3.5161.00
785_K789_E3.4901.00
597_G631_T3.4821.00
151_I222_L3.4681.00
443_I464_L3.4671.00
149_A232_A3.4151.00
162_R166_N3.3211.00
578_R581_A3.2521.00
421_N452_S3.2301.00
615_E794_S3.2041.00
582_D585_D3.1061.00
788_L794_S3.0891.00
432_I464_L3.0681.00
5_Q31_Q3.0631.00
428_I443_I3.0461.00
87_T272_I3.0311.00
754_S757_Q3.0151.00
149_A174_I3.0031.00
634_T652_G2.9811.00
417_I463_I2.9521.00
687_L730_Y2.9341.00
256_N280_E2.9271.00
263_D281_H2.8650.99
5_Q33_T2.8460.99
93_I99_I2.7200.99
269_I272_I2.6930.99
254_P268_E2.6890.99
80_E98_R2.6770.99
587_Y616_D2.6690.99
39_P133_K2.6620.99
664_T668_V2.5500.99
263_D282_R2.5460.99
726_Y761_N2.5170.99
214_V221_G2.4970.98
208_K224_F2.4730.98
170_D203_T2.4350.98
450_S457_K2.4080.98
571_V653_I2.4060.98
80_E94_T2.3650.98
9_V82_V2.3610.98
8_L19_I2.3410.98
212_E223_R2.3400.98
698_L726_Y2.3360.98
576_D579_K2.3320.98
85_V107_L2.2950.97
299_L303_M2.2830.97
273_Y302_H2.2660.97
223_R229_S2.2570.97
35_F100_Q2.2010.96
712_D748_L2.1940.96
35_F94_T2.1860.96
86_D89_N2.1750.96
35_F82_V2.1550.96
742_E750_R2.1530.96
461_E465_Q2.1330.96
413_D426_G2.1310.96
253_I272_I2.1300.96
81_T95_D2.1220.96
51_V136_D2.1220.96
301_K306_I2.1160.96
499_K510_V2.1060.95
57_D60_D2.0970.95
753_L757_Q2.0910.95
330_A365_A2.0870.95
36_G82_V2.0700.95
16_V34_I2.0630.95
311_Y314_S2.0630.95
84_K93_I2.0620.95
253_I269_I2.0530.95
760_L766_R2.0520.95
526_L530_L2.0340.94
23_L32_I2.0200.94
606_K609_D2.0130.94
670_M687_L2.0120.94
756_V760_L1.9710.93
89_N99_I1.9700.93
11_N69_Y1.9670.93
280_E285_A1.9560.93
578_R582_D1.9550.93
107_L259_I1.9510.93
25_V301_K1.9330.93
41_P76_L1.9270.93
114_F239_V1.9130.92
650_A654_A1.9030.92
506_E510_V1.8980.92
147_K170_D1.8910.92
733_Y755_H1.8900.92
7_V100_Q1.8760.92
578_R585_D1.8750.92
748_L756_V1.8650.91
572_T576_D1.8640.91
691_G696_W1.8620.91
580_I600_I1.8600.91
4_K104_E1.8550.91
700_V714_L1.8480.91
246_T250_E1.8420.91
17_R21_E1.8360.91
701_G748_L1.8330.91
123_K215_G1.8300.91
699_Y711_G1.8180.90
60_D63_L1.8150.90
628_T664_T1.8050.90
80_E95_D1.7830.89
335_E339_K1.7720.89
787_F793_T1.7720.89
4_K29_E1.7690.89
77_Y98_R1.7630.89
440_T460_V1.7540.89
82_V94_T1.7530.89
564_V601_D1.7480.88
576_D580_I1.7370.88
564_V624_A1.7350.88
259_I278_C1.7240.88
208_K226_D1.7220.88
215_G220_E1.7170.88
37_A244_N1.7130.87
123_K220_E1.7130.87
591_L640_F1.7060.87
194_Q198_E1.6990.87
211_E225_K1.6970.87
125_G141_A1.6910.87
94_T98_R1.6740.86
346_D349_D1.6700.86
662_L731_L1.6700.86
589_I613_V1.6670.86
597_G601_D1.6660.86
571_V591_L1.6640.86
249_A255_V1.6570.86
687_L727_A1.6570.86
19_I23_L1.6300.85
571_V640_F1.6080.84
574_S584_V1.6070.84
751_V756_V1.6070.84
35_F77_Y1.6030.84
589_I605_V1.6030.84
263_D310_P1.6010.84
214_V223_R1.6000.83
149_A222_L1.5840.83
6_L30_F1.5830.83
601_D631_T1.5800.83
87_T253_I1.5740.82
537_K793_T1.5630.82
464_L468_L1.5550.82
662_L776_T1.5470.81
87_T251_S1.5410.81
457_K460_V1.5390.81
64_N68_W1.5240.80
18_A275_V1.5240.80
767_Q771_G1.5180.80
429_I467_T1.5140.80
730_Y748_L1.5080.80
67_D70_E1.5070.80
14_A292_L1.5060.80
715_M718_K1.4940.79
722_E726_Y1.4860.79
700_V748_L1.4840.78
574_S592_V1.4820.78
709_R749_E1.4800.78
360_N386_D1.4740.78
119_P212_E1.4730.78
701_G730_Y1.4670.78
755_H759_V1.4650.78
654_A721_E1.4630.77
379_S383_K1.4620.77
481_I525_A1.4590.77
502_S534_N1.4580.77
792_Q795_K1.4540.77
567_M580_I1.4520.77
17_R421_N1.4510.77
80_E83_I1.4400.76
299_L302_H1.4380.76
85_V272_I1.4260.76
222_L235_V1.4140.75
609_D612_K1.4130.75
89_N93_I1.4060.75
5_Q101_P1.4040.74
733_Y737_T1.4030.74
615_E788_L1.3980.74
47_L50_K1.3940.74
769_L772_R1.3880.74
584_V589_I1.3850.73
583_V602_L1.3830.73
30_F303_M1.3810.73
266_Q273_Y1.3810.73
700_V756_V1.3730.73
328_F371_S1.3720.73
547_V551_M1.3640.72
11_N15_G1.3600.72
87_T271_H1.3500.71
281_H286_Y1.3500.71
696_W720_N1.3500.71
37_A81_T1.3490.71
580_I671_A1.3330.70
782_D785_K1.3330.70
260_I280_E1.3280.70
416_I422_G1.3260.70
18_A106_I1.3220.70
162_R323_S1.3220.70
437_C442_E1.3210.70
567_M653_I1.3180.70
491_E494_E1.3130.69
654_A696_W1.3130.69
174_I207_E1.3100.69
714_L761_N1.3090.69
36_G40_H1.3090.69
703_N745_S1.3040.69
564_V597_G1.2910.68
467_T470_S1.2870.68
353_K373_E1.2790.67
507_V526_L1.2780.67
655_L671_A1.2730.67
210_T235_V1.2650.66
438_S442_E1.2530.66
547_V555_I1.2520.66
40_H132_I1.2510.65
13_M293_Y1.2450.65
115_I118_I1.2400.65
689_V727_A1.2390.65
494_E498_A1.2230.64
689_V723_V1.2230.64
421_N448_G1.2210.64
503_H506_E1.2200.63
210_T222_L1.2150.63
22_I303_M1.2120.63
411_M415_E1.2080.63
164_L236_V1.2050.62
409_A466_H1.2010.62
57_D61_I1.1930.62
34_I76_L1.1910.62
737_T751_V1.1900.61
651_L689_V1.1870.61
583_V613_V1.1860.61
651_L696_W1.1830.61
504_T508_M1.1820.61
176_L209_Q1.1810.61
266_Q302_H1.1750.60
567_M576_D1.1720.60
327_V368_F1.1700.60
417_I432_I1.1670.60
205_L208_K1.1560.59
437_C443_I1.1500.59
572_T594_M1.1490.59
601_D671_A1.1490.59
623_Y631_T1.1460.59
126_V237_M1.1450.58
84_K250_E1.1400.58
581_A585_D1.1400.58
594_M600_I1.1360.58
540_D793_T1.1340.58
597_G623_Y1.1330.58
670_M689_V1.1330.58
115_I128_A1.1320.58
132_I353_K1.1290.57
219_V235_V1.1280.57
67_D71_E1.1270.57
703_N744_T1.1260.57
334_N366_V1.1250.57
576_D619_M1.1240.57
326_E371_S1.1210.57
654_A724_L1.1180.57
650_A756_V1.1150.56
433_Q471_D1.1140.56
68_W72_N1.1120.56
668_V731_L1.1100.56
77_Y80_E1.1040.56
19_I68_W1.1030.56
192_L225_K1.1030.56
704_G745_S1.0980.55
589_I640_F1.0980.55
31_Q75_Q1.0980.55
737_T747_W1.0960.55
187_A191_R1.0930.55
104_E273_Y1.0920.55
537_K787_F1.0920.55
30_F304_C1.0910.55
21_E297_K1.0890.55
221_G229_S1.0890.55
22_I304_C1.0850.54
174_I189_A1.0840.54
113_P238_A1.0810.54
579_K582_D1.0770.54
57_D63_L1.0760.54
64_N67_D1.0750.54
444_K457_K1.0740.54
769_L773_M1.0720.53
118_I210_T1.0710.53
54_G60_D1.0690.53
212_E303_M1.0670.53
179_F187_A1.0650.53
178_P187_A1.0650.53
33_T75_Q1.0640.53
176_L182_E1.0610.53
151_I235_V1.0500.52
332_D356_V1.0460.52
59_K65_D1.0450.51
209_Q225_K1.0440.51
83_I95_D1.0430.51
584_V613_V1.0420.51
68_W126_V1.0420.51
574_S585_D1.0410.51
10_G13_M1.0400.51
40_H133_K1.0390.51
400_S403_A1.0380.51
355_I362_I1.0370.51
11_N42_N1.0360.51
495_E511_L1.0340.51
127_T141_A1.0310.51
504_T526_L1.0280.50
495_E499_K1.0280.50
651_L654_A1.0260.50
273_Y299_L1.0230.50
479_E488_S1.0200.50
11_N76_L1.0150.49
138_M234_L1.0140.49
335_E341_A1.0130.49
19_I32_I1.0120.49
330_A378_F1.0090.49
283_G346_D1.0060.49
629_L655_L1.0030.49
19_I69_Y1.0030.49
647_D650_A1.0030.49
651_L691_G1.0020.48
132_I136_D0.9990.48
786_D790_D0.9980.48
56_T60_D0.9960.48
177_A182_E0.9950.48
721_E725_E0.9930.48
192_L345_F0.9920.48
253_I268_E0.9920.48
191_R194_Q0.9910.48
344_V351_I0.9890.48
687_L723_V0.9890.48
58_I62_T0.9870.47
224_F228_T0.9830.47
478_K491_E0.9800.47
723_V727_A0.9790.47
525_A529_Y0.9790.47
56_T61_I0.9770.47
36_G78_T0.9750.47
411_M417_I0.9740.47
6_L24_S0.9700.46
6_L18_A0.9680.46
125_G219_V0.9660.46
728_G770_N0.9660.46
55_D60_D0.9630.46
343_K714_L0.9600.46
579_K583_V0.9590.45
450_S458_P0.9580.45
666_H708_L0.9570.45
766_R769_L0.9560.45
37_A246_T0.9540.45
73_N340_K0.9510.45
758_S764_E0.9450.44
661_G780_H0.9440.44
581_A634_T0.9420.44
8_L16_V0.9410.44
58_I63_L0.9400.44
340_K359_G0.9380.44
505_R508_M0.9380.44
6_L303_M0.9370.44
709_R748_L0.9360.44
501_L526_L0.9350.44
479_E491_E0.9350.44
264_Y302_H0.9330.44
259_I280_E0.9330.44
9_V32_I0.9320.44
153_G180_L0.9310.44
704_G744_T0.9310.44
83_I246_T0.9290.43
700_V760_L0.9290.43
569_G653_I0.9280.43
568_Y660_E0.9280.43
82_V92_V0.9280.43
493_V772_R0.9270.43
94_T100_Q0.9270.43
587_Y612_K0.9260.43
189_A368_F0.9260.43
26_A29_E0.9250.43
232_A235_V0.9250.43
493_V533_I0.9230.43
605_V613_V0.9230.43
478_K488_S0.9210.43
387_I391_S0.9210.43
146_K233_D0.9190.43
587_Y794_S0.9190.43
33_T77_Y0.9180.43
197_L202_M0.9170.43
657_K660_E0.9160.42
215_G221_G0.9160.42
116_L237_M0.9150.42
81_T96_A0.9150.42
684_I704_G0.9140.42
770_N773_M0.9130.42
185_L202_M0.9100.42
678_N690_V0.9070.42
550_R555_I0.9020.42
197_L204_F0.9010.41
532_M735_R0.9000.41
378_F382_Q0.8980.41
341_A354_K0.8980.41
766_R772_R0.8950.41
404_G417_I0.8930.41
264_Y310_P0.8920.41
655_L689_V0.8910.41
68_W74_I0.8900.41
440_T450_S0.8900.41
228_T580_I0.8900.41
175_H182_E0.8900.41
426_G430_Q0.8890.41
666_H704_G0.8860.40
39_P132_I0.8850.40
496_I529_Y0.8850.40
162_R200_Q0.8850.40
790_D793_T0.8850.40
62_T68_W0.8850.40
357_L387_I0.8840.40
118_I121_A0.8840.40
576_D602_L0.8800.40
487_L511_L0.8800.40
106_I299_L0.8770.40
407_I410_A0.8770.40
392_K395_I0.8760.40
755_H758_S0.8760.40
444_K450_S0.8750.40
432_I437_C0.8740.40
58_I61_I0.8720.39
393_I396_L0.8710.39
433_Q467_T0.8710.39
13_M292_L0.8710.39
140_A143_K0.8700.39
162_R165_L0.8700.39
185_L371_S0.8700.39
757_Q761_N0.8690.39
580_I735_R0.8640.39
246_T724_L0.8630.39
726_Y770_N0.8610.39
736_E772_R0.8590.39
432_I693_D0.8560.38
651_L726_Y0.8520.38
14_A52_L0.8520.38
761_N770_N0.8510.38
16_V19_I0.8500.38
487_L495_E0.8490.38
286_Y311_Y0.8470.38
49_S166_N0.8470.38
145_Y233_D0.8460.38
408_T463_I0.8460.38
435_K446_C0.8440.38
165_L202_M0.8430.38
768_E772_R0.8420.37
84_K91_T0.8420.37
576_D583_V0.8410.37
497_K533_I0.8410.37
59_K62_T0.8400.37
202_M323_S0.8400.37
185_L189_A0.8400.37
26_A304_C0.8360.37
408_T417_I0.8310.37
145_Y272_I0.8280.37
367_L373_E0.8260.36
105_L247_L0.8260.36
92_V102_Y0.8250.36
612_K615_E0.8230.36
23_L36_G0.8220.36
21_E25_V0.8210.36
181_M210_T0.8210.36
190_G651_L0.8160.36
427_A435_K0.8140.36
579_K620_P0.8130.36
62_T67_D0.8110.35
576_D592_V0.8090.35
500_G506_E0.8070.35
9_V12_G0.8070.35
106_I275_V0.8070.35
112_V244_N0.8050.35
64_N69_Y0.8040.35
82_V100_Q0.8030.35
668_V687_L0.8020.35
720_N723_V0.8020.35
91_T101_P0.8010.35
194_Q206_L0.8000.35
195_N756_V0.7990.35
714_L730_Y0.7990.35
572_T580_I0.7980.35
149_A206_L0.7950.34
203_T206_L0.7930.34
142_S167_L0.7920.34
448_G451_R0.7910.34
119_P275_V0.7900.34
104_E266_Q0.7880.34
787_F794_S0.7870.34
7_V35_F0.7870.34
41_P78_T0.7870.34
687_L698_L0.7850.34
11_N77_Y0.7850.34
529_Y739_N0.7840.34
8_L34_I0.7820.34
32_I507_V0.7820.34
585_D616_D0.7810.34
547_V797_L0.7800.33
222_L230_I0.7790.33
19_I34_I0.7790.33
620_P661_G0.7780.33
519_C522_C0.7780.33
493_V497_K0.7760.33
173_V202_M0.7760.33
603_I649_M0.7760.33
36_G76_L0.7750.33
5_Q11_N0.7750.33
401_Q789_E0.7710.33
23_L72_N0.7710.33
421_N460_V0.7700.33
482_C519_C0.7690.33
36_G64_N0.7690.33
81_T246_T0.7690.33
90_K95_D0.7680.33
142_S145_Y0.7680.33
401_Q564_V0.7680.33
383_K414_D0.7670.33
521_K740_Y0.7670.33
15_G42_N0.7670.33
737_T759_V0.7670.33
329_S333_F0.7660.33
501_L511_L0.7650.33
564_V603_I0.7650.33
148_A164_L0.7620.32
175_H238_A0.7620.32
42_N135_T0.7610.32
289_V293_Y0.7610.32
248_G259_I0.7580.32
495_E510_V0.7580.32
557_K670_M0.7570.32
573_N589_I0.7560.32
266_Q269_I0.7550.32
468_L475_S0.7540.32
459_L467_T0.7540.32
311_Y315_V0.7520.32
278_C735_R0.7510.32
88_E93_I0.7440.31
32_I753_L0.7430.31
7_V92_V0.7430.31
183_R265_M0.7420.31
580_I602_L0.7410.31
163_G292_L0.7410.31
579_K616_D0.7410.31
14_A163_G0.7400.31
216_D220_E0.7390.31
615_E789_E0.7380.31
551_M607_K0.7380.31
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303_M316_L0.5070.19
532_M538_Y0.5070.19
270_P608_E0.5070.19
143_K440_T0.5070.19
40_H136_D0.5070.19
69_Y429_I0.5060.19
51_V219_V0.5060.19
694_G717_V0.5060.19
527_N555_I0.5050.19
572_T579_K0.5050.19
685_K743_R0.5050.19
684_I745_S0.5050.19
260_I285_A0.5050.19
410_A733_Y0.5040.19
627_K681_E0.5040.19
642_R677_R0.5040.19
19_I31_Q0.5030.19
64_N74_I0.5030.19
272_I575_T0.5030.19
633_K667_K0.5030.19
225_K228_T0.5030.19
630_R677_R0.5030.19
230_I443_I0.5020.19
490_D505_R0.5020.19
457_K461_E0.5010.19
581_A761_N0.5010.19
42_N558_D0.5010.19
16_V74_I0.5010.19
60_D67_D0.5010.19
633_K644_G0.5000.19
594_M619_M0.5000.19
622_G681_E0.5000.19
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3lxdA 1 0.4957 100 0.823 Contact Map
1q1rA 1 0.5019 100 0.826 Contact Map
2gqwA 2 0.4832 100 0.826 Contact Map
3kljA 1 0.4696 100 0.827 Contact Map
3fg2P 1 0.4919 100 0.827 Contact Map
3ef6A 1 0.4894 100 0.829 Contact Map
1xhcA 1 0.4298 100 0.831 Contact Map
2v3aA 1 0.472 100 0.839 Contact Map
3iwaA 2 0.4534 100 0.839 Contact Map
1m6iA 1 0.4745 100 0.842 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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