GREMLIN Database
NASC - Assimilatory nitrate reductase catalytic subunit
UniProt: P42434 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 710 (666)
Sequences: 9579 (5837)
Seq/√Len: 226.2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
81_R92_P5.6341.00
641_I660_S4.5461.00
100_N504_A4.3931.00
648_K708_I4.0221.00
492_K500_D3.6921.00
252_E298_V3.4041.00
648_K655_S3.3291.00
244_G282_I3.2081.00
280_N290_L3.1881.00
597_L639_Y3.1831.00
105_Q108_M3.1641.00
635_T669_D3.1191.00
496_Q500_D3.0981.00
634_Q668_K2.9881.00
483_A486_P2.9831.00
248_I252_E2.9211.00
257_E261_Q2.9141.00
101_H457_V2.9051.00
265_N572_D2.8471.00
247_K251_D2.8281.00
246_V270_L2.7761.00
188_A242_A2.7381.00
94_S97_E2.7221.00
650_E708_I2.6901.00
515_S518_D2.6891.00
99_L504_A2.6881.00
102_I457_V2.6711.00
283_A290_L2.6661.00
443_A455_A2.6281.00
650_E706_R2.5911.00
108_M112_E2.5681.00
572_D576_A2.5671.00
212_Y299_K2.5381.00
246_V333_I2.5341.00
109_I117_A2.5271.00
241_L286_T2.5021.00
647_V660_S2.4721.00
289_S292_D2.4641.00
229_L295_K2.4631.00
651_S705_V2.4601.00
631_I660_S2.4591.00
292_D295_K2.4461.00
81_R490_E2.4451.00
626_E659_R2.4431.00
290_L294_R2.4401.00
183_R305_S2.4291.00
215_A227_A2.4221.00
93_V457_V2.4211.00
631_I707_I2.4191.00
638_T668_K2.4131.00
84_L101_H2.3921.00
636_A662_L2.3881.00
650_E655_S2.3851.00
99_L500_D2.3661.00
278_D281_D2.3391.00
255_I260_I2.3211.00
84_L93_V2.2881.00
84_L457_V2.2851.00
250_I267_F2.2671.00
181_H340_P2.2431.00
253_Q257_E2.2271.00
258_D262_S2.2061.00
182_T185_I2.1571.00
106_V413_G2.1501.00
412_K439_T2.1131.00
643_D662_L2.1121.00
102_I442_V2.0851.00
500_D504_A2.0831.00
639_Y706_R2.0761.00
184_V299_K2.0441.00
641_I647_V2.0201.00
231_L296_A2.0171.00
629_M671_V2.0071.00
295_K299_K1.9901.00
231_L288_V1.9811.00
629_M647_V1.9701.00
101_H105_Q1.9681.00
92_P490_E1.9231.00
109_I413_G1.9151.00
229_L292_D1.9081.00
488_P491_A1.9021.00
538_S541_R1.9001.00
241_L293_I1.8851.00
629_M649_I1.8751.00
206_A211_A1.8731.00
646_L657_T1.8691.00
648_K657_T1.8691.00
93_V101_H1.8531.00
207_K228_D1.8391.00
597_L671_V1.8331.00
247_K279_L1.8221.00
658_V673_V1.8111.00
415_F444_I1.8061.00
184_V214_I1.8061.00
36_Q53_I1.7971.00
237_T285_Q1.7961.00
255_I267_F1.7941.00
643_D661_K1.7741.00
642_E645_V1.7721.00
671_V705_V1.7631.00
250_I271_K1.7571.00
629_M673_V1.7521.00
448_I452_A1.7491.00
100_N104_D1.7461.00
254_L301_A1.7391.00
634_Q637_A1.7321.00
339_K342_S1.7211.00
252_E294_R1.7201.00
541_R545_E1.7191.00
41_T44_T1.7161.00
229_L299_K1.7121.00
631_I671_V1.7051.00
84_L91_M1.6991.00
248_I294_R1.6901.00
282_I293_I1.6771.00
432_K436_R1.6721.00
514_T518_D1.6641.00
300_F306_G1.6591.00
468_E483_A1.6501.00
260_I267_F1.6441.00
80_T489_G1.6381.00
248_I279_L1.6281.00
272_Q275_D1.6191.00
248_I298_V1.6051.00
83_L458_I1.6031.00
602_G672_F1.5941.00
500_D503_S1.5881.00
216_I241_L1.5871.00
433_K436_R1.5851.00
283_A289_S1.5841.00
646_L659_R1.5781.00
438_L441_F1.5711.00
254_L298_V1.5581.00
250_I274_T1.5551.00
266_G269_E1.5551.00
298_V302_K1.5491.00
300_F334_T1.5481.00
249_I255_I1.5441.00
280_N294_R1.5401.00
241_L296_A1.5381.00
93_V97_E1.5371.00
34_K55_N1.5291.00
22_Y39_E1.5221.00
597_L635_T1.5131.00
379_A383_K1.4981.00
249_I301_A1.4931.00
186_I296_A1.4931.00
630_E663_S1.4911.00
240_A285_Q1.4911.00
283_A293_I1.4901.00
462_S493_H1.4811.00
107_T111_T1.4771.00
333_I577_L1.4761.00
440_F457_V1.4741.00
117_A412_K1.4731.00
264_T577_L1.4721.00
229_L296_A1.4641.00
138_A144_T1.4571.00
97_E101_H1.4561.00
104_D108_M1.4511.00
265_N576_A1.4421.00
186_I216_I1.4391.00
102_I459_L1.4301.00
71_Q619_A1.4261.00
113_H412_K1.4191.00
656_I673_V1.4161.00
82_P95_W1.4111.00
83_L92_P1.3991.00
184_V296_A1.3971.00
269_E272_Q1.3891.00
427_N689_E1.3871.00
540_G544_R1.3851.00
492_K496_Q1.3791.00
24_T37_L1.3791.00
443_A452_A1.3701.00
553_P557_H1.3611.00
23_D36_Q1.3521.00
251_D275_D1.3511.00
237_T286_T1.3501.00
448_I458_I1.3481.00
38_V50_A1.3481.00
106_V442_V1.3461.00
248_I251_D1.3461.00
251_D294_R1.3371.00
303_E306_G1.3291.00
231_L292_D1.3281.00
245_L296_A1.3281.00
416_L441_F1.3271.00
314_I327_F1.3241.00
446_L463_S1.3191.00
119_A411_I1.3191.00
258_D261_Q1.3111.00
248_I254_L1.3101.00
407_N430_L1.3081.00
267_F271_K1.3061.00
120_V138_A1.3011.00
592_T652_P1.2981.00
597_L706_R1.2931.00
37_L46_K1.2881.00
639_Y707_I1.2861.00
521_N524_R1.2781.00
99_L492_K1.2741.00
281_D284_E1.2721.00
218_P230_H1.2681.00
493_H496_Q1.2651.00
101_H440_F1.2631.00
215_A224_T1.2611.00
247_K275_D1.2591.00
245_L300_F1.2571.00
277_L281_D1.2551.00
277_L285_Q1.2551.00
629_M658_V1.2481.00
233_I288_V1.2441.00
110_Q118_M1.2371.00
103_K504_A1.2371.00
287_S667_R1.2331.00
444_I497_I1.2331.00
570_H576_A1.2321.00
183_R303_E1.2261.00
632_H668_K1.2241.00
482_E543_R1.2221.00
336_K342_S1.2221.00
517_E521_N1.2191.00
633_P664_E1.2161.00
277_L282_I1.2111.00
503_S508_G1.2081.00
250_I255_I1.2071.00
444_I461_A1.2051.00
97_E457_V1.2051.00
628_F661_K1.2051.00
246_V274_T1.2021.00
37_L49_T1.2011.00
594_D706_R1.1951.00
86_K91_M1.1921.00
257_E271_K1.1911.00
430_L433_K1.1901.00
23_D52_G1.1901.00
245_L297_A1.1871.00
107_T110_Q1.1861.00
183_R304_T1.1861.00
233_I237_T1.1841.00
673_V683_V1.1791.00
245_L249_I1.1751.00
520_F524_R1.1721.00
119_A402_M1.1681.00
161_A324_V1.1601.00
518_D521_N1.1591.00
178_D181_H1.1581.00
417_M498_I1.1561.00
186_I245_L1.1551.00
36_Q50_A1.1541.00
118_M413_G1.1471.00
401_E404_E1.1441.00
427_N430_L1.1441.00
404_E430_L1.1421.00
663_S666_I1.1381.00
413_G440_F1.1311.00
382_A388_H1.1261.00
248_I293_I1.1231.00
184_V306_G1.1221.00
36_Q52_G1.1201.00
214_I296_A1.1191.00
480_L543_R1.1171.00
160_T694_A1.1141.00
77_S616_K1.1111.00
276_S281_D1.1111.00
205_K208_E1.1101.00
242_A327_F1.1101.00
254_L302_K1.1091.00
249_I334_T1.1071.00
398_S401_E1.1051.00
267_F333_I1.1051.00
496_Q503_S1.1051.00
185_I211_A1.0981.00
185_I203_F1.0951.00
220_E225_K1.0951.00
407_N433_K1.0891.00
268_E271_K1.0851.00
630_E661_K1.0851.00
187_L190_T1.0851.00
110_Q115_H1.0821.00
594_D652_P1.0801.00
85_K90_F1.0791.00
649_I673_V1.0751.00
136_K139_R1.0731.00
283_A286_T1.0681.00
403_M406_I1.0681.00
413_G442_V1.0631.00
374_N377_H1.0621.00
184_V303_E1.0621.00
105_Q439_T1.0611.00
462_S491_A1.0601.00
188_A216_I1.0571.00
402_M411_I1.0551.00
599_L705_V1.0541.00
244_G293_I1.0491.00
264_T332_L1.0481.00
433_K437_R1.0421.00
106_V505_L1.0411.00
399_A402_M1.0411.00
225_K665_Q1.0391.00
245_L330_M1.0371.00
270_L274_T1.0341.00
220_E665_Q1.0301.00
207_K226_I1.0301.00
109_I440_F1.0241.00
291_V294_R1.0221.00
260_I577_L1.0211.00
649_I705_V1.0191.00
179_I307_M1.0181.00
308_L331_V1.0161.00
73_A485_R1.0141.00
122_G125_S1.0131.00
671_V707_I1.0121.00
282_I286_T1.0111.00
270_L333_I1.0111.00
45_R74_L1.0091.00
459_L497_I1.0081.00
109_I439_T1.0081.00
242_A326_G1.0081.00
46_K73_A1.0051.00
185_I206_A1.0011.00
468_E480_L0.9971.00
214_I299_K0.9961.00
300_F308_L0.9951.00
183_R209_N0.9941.00
265_N574_K0.9931.00
38_V48_Y0.9921.00
271_K275_D0.9901.00
110_Q142_L0.9891.00
595_Y706_R0.9881.00
629_M707_I0.9881.00
631_I641_I0.9871.00
416_L451_T0.9841.00
402_M406_I0.9821.00
216_I231_L0.9821.00
114_G117_A0.9811.00
86_K89_E0.9781.00
596_P706_R0.9761.00
422_A428_A0.9741.00
212_Y228_D0.9711.00
465_L484_S0.9711.00
51_I60_G0.9671.00
415_F501_L0.9671.00
521_N540_G0.9661.00
631_I636_A0.9641.00
278_D282_I0.9631.00
405_K410_D0.9621.00
295_K298_V0.9591.00
600_T670_T0.9581.00
283_A291_V0.9581.00
461_A497_I0.9581.00
517_E539_Y0.9571.00
105_Q109_I0.9571.00
633_P637_A0.9551.00
243_N277_L0.9541.00
382_A389_Q0.9541.00
288_V293_I0.9541.00
332_L575_A0.9531.00
630_E665_Q0.9521.00
218_P232_K0.9521.00
99_L496_Q0.9511.00
632_H666_I0.9511.00
531_I535_S0.9461.00
305_S339_K0.9461.00
247_K278_D0.9431.00
244_G248_I0.9431.00
49_T70_H0.9421.00
239_A323_A0.9421.00
294_R298_V0.9421.00
235_P670_T0.9411.00
248_I297_A0.9411.00
102_I440_F0.9401.00
80_T92_P0.9401.00
306_G336_K0.9401.00
118_M142_L0.9381.00
165_T325_K0.9381.00
563_L566_E0.9361.00
95_W459_L0.9351.00
422_A432_K0.9341.00
234_K667_R0.9331.00
281_D285_Q0.9321.00
216_I233_I0.9261.00
91_M97_E0.9241.00
106_V142_L0.9241.00
290_L293_I0.9231.00
40_Q47_K0.9231.00
80_T488_P0.9191.00
34_K52_G0.9171.00
180_P202_Y0.9171.00
103_K107_T0.9161.00
102_I501_L0.9140.99
216_I296_A0.9140.99
186_I308_L0.9110.99
204_E207_K0.9090.99
452_A458_I0.9090.99
95_W497_I0.9080.99
514_T522_E0.9080.99
84_L97_E0.9050.99
187_L213_F0.9040.99
597_L707_I0.9030.99
634_Q664_E0.9020.99
90_F458_I0.9000.99
632_H662_L0.8990.99
44_T486_P0.8980.99
247_K274_T0.8940.99
595_Y651_S0.8940.99
249_I330_M0.8940.99
429_N433_K0.8910.99
462_S487_C0.8880.99
212_Y229_L0.8880.99
436_R454_Y0.8870.99
399_A403_M0.8870.99
268_E272_Q0.8870.99
37_L465_L0.8860.99
96_E504_A0.8850.99
79_I458_I0.8850.99
123_S126_I0.8830.99
468_E516_A0.8800.99
270_L577_L0.8800.99
279_L282_I0.8790.99
233_I241_L0.8770.99
99_L501_L0.8760.99
255_I333_I0.8750.99
288_V292_D0.8750.99
401_E405_K0.8740.99
635_T668_K0.8740.99
192_I203_F0.8740.99
106_V415_F0.8720.99
214_I229_L0.8710.99
377_H380_H0.8710.99
243_N273_H0.8700.99
116_D145_K0.8680.99
521_N525_E0.8660.99
517_E543_R0.8660.99
256_N339_K0.8660.99
23_D54_D0.8660.99
102_I105_Q0.8630.99
137_F505_L0.8620.99
592_T704_A0.8620.99
468_E517_E0.8600.99
279_L294_R0.8600.99
592_T596_P0.8590.99
376_E379_A0.8560.99
240_A244_G0.8560.99
402_M405_K0.8560.99
390_D393_P0.8550.99
273_H276_S0.8540.99
125_S128_N0.8510.99
503_S514_T0.8500.99
187_L223_T0.8500.99
492_K497_I0.8480.99
207_K213_F0.8480.99
305_S342_S0.8410.99
246_V330_M0.8400.99
414_L438_L0.8400.99
81_R94_S0.8370.99
217_D221_T0.8360.99
291_V295_K0.8360.99
22_Y484_S0.8360.99
627_S677_W0.8340.99
653_R703_C0.8330.99
314_I323_A0.8320.99
241_L245_L0.8310.99
184_V212_Y0.8300.99
124_A127_T0.8290.99
82_P94_S0.8270.99
548_I552_C0.8250.99
220_E232_K0.8230.99
412_K438_L0.8230.99
106_V110_Q0.8220.99
184_V300_F0.8210.99
35_M62_L0.8210.99
636_A641_I0.8180.99
420_N610_T0.8170.99
656_I686_L0.8170.99
220_E664_E0.8150.99
292_D299_K0.8140.99
164_Q325_K0.8130.99
279_L283_A0.8110.99
631_I647_V0.8100.99
653_R687_I0.8100.99
193_A223_T0.8090.99
667_R670_T0.8050.99
299_K303_E0.8050.99
180_P205_K0.8040.99
592_T595_Y0.8020.99
407_N437_R0.7980.99
477_R549_H0.7980.99
381_I385_W0.7960.99
83_L448_I0.7950.99
397_V405_K0.7950.99
232_K667_R0.7940.99
531_I534_Y0.7940.99
507_K511_F0.7900.99
591_P704_A0.7900.99
122_G128_N0.7900.99
404_E408_D0.7900.99
658_V683_V0.7850.98
242_A330_M0.7850.98
105_Q440_F0.7850.98
449_S452_A0.7840.98
80_T83_L0.7840.98
233_I286_T0.7840.98
99_L103_K0.7840.98
123_S127_T0.7830.98
312_R316_Q0.7810.98
234_K287_S0.7810.98
329_N577_L0.7810.98
26_C33_C0.7790.98
248_I290_L0.7780.98
25_Q479_T0.7780.98
576_A579_V0.7770.98
123_S128_N0.7770.98
29_C33_C0.7740.98
243_N274_T0.7740.98
251_D279_L0.7730.98
164_Q694_A0.7730.98
485_R488_P0.7730.98
298_V301_A0.7720.98
398_S696_K0.7720.98
249_I253_Q0.7710.98
463_S488_P0.7710.98
617_S620_L0.7700.98
652_P704_A0.7700.98
93_V98_A0.7690.98
244_G281_D0.7680.98
165_T578_S0.7670.98
429_N685_D0.7650.98
478_V537_I0.7640.98
44_T47_K0.7620.98
656_I685_D0.7600.98
252_E301_A0.7590.98
380_H383_K0.7570.98
400_Y405_K0.7570.98
273_H277_L0.7570.98
634_Q638_T0.7560.98
231_L241_L0.7550.98
244_G279_L0.7550.98
239_A326_G0.7520.98
631_I662_L0.7510.98
283_A288_V0.7500.98
499_C503_S0.7480.98
308_L327_F0.7480.98
416_L443_A0.7470.98
244_G278_D0.7470.98
279_L290_L0.7470.98
122_G127_T0.7450.98
95_W492_K0.7440.98
508_G512_S0.7440.98
85_K88_G0.7430.98
40_Q45_R0.7420.98
75_N447_F0.7420.98
73_A463_S0.7370.98
101_H104_D0.7360.98
435_L454_Y0.7350.98
413_G457_V0.7330.98
244_G284_E0.7320.98
260_I264_T0.7310.98
116_D144_T0.7310.98
104_D107_T0.7310.98
161_A328_L0.7310.98
178_D341_Y0.7310.98
422_A435_L0.7300.98
519_I523_L0.7290.98
174_N178_D0.7280.97
656_I683_V0.7270.97
496_Q499_C0.7270.97
348_T351_G0.7250.97
318_T699_G0.7240.97
22_Y37_L0.7240.97
699_G702_V0.7240.97
406_I438_L0.7210.97
26_C29_C0.7200.97
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507_K513_Y0.5530.89
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155_M158_A0.5470.89
174_N307_M0.5470.89
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73_A465_L0.5460.89
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271_K274_T0.5330.88
218_P600_T0.5330.88
188_A330_M0.5330.88
71_Q617_S0.5330.88
289_S294_R0.5320.88
461_A494_D0.5320.88
234_K598_Y0.5320.88
426_P700_F0.5320.88
413_G438_L0.5310.87
106_V501_L0.5310.87
102_I106_V0.5310.87
627_S674_P0.5300.87
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398_S402_M0.5300.87
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26_C63_C0.5280.87
249_I300_F0.5280.87
635_T662_L0.5280.87
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112_E439_T0.5270.87
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317_Q702_V0.5250.87
192_I223_T0.5250.87
377_H381_I0.5240.87
217_D223_T0.5240.87
215_A223_T0.5230.87
126_I130_E0.5230.87
245_L248_I0.5220.87
400_Y404_E0.5220.87
292_D296_A0.5220.87
397_V406_I0.5210.86
186_I300_F0.5210.86
402_M414_L0.5210.86
619_A622_A0.5200.86
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662_L665_Q0.5190.86
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204_E208_E0.5180.86
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246_V250_I0.5170.86
397_V404_E0.5160.86
542_L546_G0.5150.86
523_L526_A0.5140.86
404_E689_E0.5140.86
395_K400_Y0.5140.86
533_D537_I0.5140.86
638_T669_D0.5130.86
202_Y205_K0.5130.86
635_T639_Y0.5120.86
397_V400_Y0.5120.86
276_S581_P0.5110.85
192_I347_I0.5110.85
404_E407_N0.5110.85
632_H635_T0.5100.85
378_R393_P0.5100.85
443_A449_S0.5100.85
330_M334_T0.5090.85
396_G400_Y0.5090.85
414_L421_P0.5080.85
398_S403_M0.5080.85
278_D283_A0.5070.85
421_P451_T0.5070.85
521_N543_R0.5070.85
288_V296_A0.5050.85
386_G389_Q0.5050.85
237_T282_I0.5050.85
357_R361_Q0.5040.85
187_L215_A0.5040.85
442_V457_V0.5040.85
596_P652_P0.5040.85
300_F336_K0.5030.85
520_F527_S0.5030.85
320_G324_V0.5030.85
217_D230_H0.5030.85
250_I253_Q0.5020.84
255_I271_K0.5020.84
103_K500_D0.5020.84
599_L671_V0.5020.84
49_T69_A0.5020.84
382_A386_G0.5020.84
264_T267_F0.5020.84
414_L435_L0.5020.84
519_I522_E0.5010.84
152_R156_S0.5010.84
146_Y397_V0.5010.84
156_S697_M0.5000.84
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2iv2X 1 0.9282 100 0.165 Contact Map
2napA 1 0.9676 100 0.168 Contact Map
1h0hA 1 0.9803 100 0.178 Contact Map
3ml1A 1 0.9775 100 0.184 Contact Map
1kqfA 3 0.9775 100 0.189 Contact Map
2e7zA 1 0.9324 100 0.19 Contact Map
2vpzA 1 0.9451 100 0.201 Contact Map
2ivfA 1 0.9732 100 0.211 Contact Map
1q16A 2 0.9901 100 0.215 Contact Map
4aayA 6 0.9338 100 0.229 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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