YTEA - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YTEA - Uncharacterized protein YteA

UniProt:	P42408	Sequences: MLTKEQLQHLKNELEQTKKDILNRFKDNDHFQLNSAFPYDSWGELSAYDNHPGDQATELYEREKDIALDLHEREHLRDIEHSLKAIENGTYGICEVSGKEIPFERLEALPTATTLAEYSSQDVVSKDRPIEEETPFGQFEFDDDEEIRAPYDSEDSYQDVEKYGNSQTPQDMENPPLSYDDMTMNAEENIGNTESYENFIATDITGKEITVYQSRAHERYEEELDEEGIMTTFGDLHAD	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	239 (210)
Sequences:	296 (253)
Seq/√Len:	17.4

BACSU - YTEA G16O

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
151_Y	159_D	6.335	1.00
97_S	115_L	4.829	1.00
61_E	64_K	3.812	1.00
95_E	113_T	3.676	1.00
21_I	79_I	3.188	0.99
10_L	86_I	3.181	0.99
154_E	158_Q	3.058	0.99
11_K	87_E	2.654	0.97
128_R	132_E	2.641	0.97
166_S	169_P	2.590	0.97
18_K	22_L	2.576	0.97
136_F	142_D	2.560	0.96
192_N	197_E	2.546	0.96
17_T	75_H	2.475	0.96
97_S	118_Y	2.455	0.95
164_G	169_P	2.442	0.95
24_R	72_E	2.377	0.95
194_E	197_E	2.313	0.94
128_R	131_E	2.022	0.88
156_S	160_V	1.987	0.87
93_I	100_E	1.964	0.86
60_Y	63_E	1.948	0.86
39_Y	48_Y	1.939	0.86
56_A	60_Y	1.933	0.85
22_L	80_E	1.918	0.85
62_R	65_D	1.910	0.85
155_D	158_Q	1.879	0.84
115_L	118_Y	1.863	0.83
139_F	153_S	1.793	0.81
37_F	42_W	1.736	0.79
142_D	153_S	1.664	0.75
10_L	103_F	1.657	0.75
149_A	188_E	1.650	0.75
3_T	6_Q	1.635	0.74
11_K	86_I	1.607	0.73
31_F	72_E	1.574	0.71
138_Q	153_S	1.564	0.71
213_Q	217_H	1.552	0.70
18_K	80_E	1.549	0.70
203_D	206_G	1.513	0.68
79_I	145_E	1.501	0.67
165_N	169_P	1.481	0.66
61_E	65_D	1.476	0.66
56_A	93_I	1.459	0.65
138_Q	142_D	1.441	0.64
17_T	107_E	1.430	0.64
84_K	88_N	1.426	0.63
99_K	117_E	1.404	0.62
9_H	107_E	1.393	0.61
136_F	139_F	1.391	0.61
137_G	142_D	1.375	0.60
171_D	183_T	1.362	0.60
166_S	171_D	1.346	0.59
160_V	193_T	1.341	0.58
196_Y	199_F	1.337	0.58
11_K	90_T	1.319	0.57
167_Q	172_M	1.316	0.57
75_H	111_T	1.311	0.57
152_D	158_Q	1.300	0.56
109_L	112_A	1.286	0.55
59_L	63_E	1.284	0.55
74_E	78_D	1.273	0.54
164_G	168_T	1.270	0.54
135_P	138_Q	1.265	0.54
18_K	87_E	1.261	0.54
142_D	154_E	1.243	0.53
21_I	24_R	1.222	0.51
154_E	188_E	1.218	0.51
17_T	20_D	1.214	0.51
78_D	111_T	1.209	0.51
56_A	63_E	1.208	0.50
167_Q	171_D	1.186	0.49
165_N	171_D	1.170	0.48
8_Q	11_K	1.162	0.48
58_E	97_S	1.150	0.47
95_E	114_T	1.105	0.44
47_A	55_Q	1.104	0.44
94_C	97_S	1.094	0.44
199_F	203_D	1.091	0.43
151_Y	157_Y	1.088	0.43
164_G	171_D	1.087	0.43
119_S	122_D	1.086	0.43
7_L	86_I	1.076	0.43
82_S	85_A	1.071	0.42
201_A	204_I	1.067	0.42
135_P	142_D	1.062	0.42
196_Y	214_S	1.056	0.41
81_H	113_T	1.050	0.41
29_D	77_R	1.048	0.41
136_F	154_E	1.040	0.40
13_E	17_T	1.036	0.40
5_E	9_H	1.031	0.40
85_A	113_T	1.030	0.40
188_E	214_S	1.030	0.40
27_D	180_D	1.025	0.40
76_L	156_S	1.022	0.39
94_C	115_L	1.017	0.39
167_Q	170_Q	1.001	0.38
57_T	63_E	0.999	0.38
136_F	153_S	0.992	0.38
56_A	130_I	0.991	0.38
8_Q	116_A	0.990	0.38
2_L	6_Q	0.990	0.38
161_E	165_N	0.987	0.37
22_L	79_I	0.983	0.37
200_I	204_I	0.970	0.36
139_F	148_R	0.968	0.36
77_R	88_N	0.964	0.36
151_Y	163_Y	0.956	0.36
80_E	100_E	0.942	0.35
202_T	206_G	0.941	0.35
116_A	119_S	0.938	0.35
5_E	16_Q	0.936	0.35
164_G	167_Q	0.932	0.34
14_L	44_E	0.928	0.34
81_H	95_E	0.924	0.34
112_A	144_D	0.923	0.34
40_D	79_I	0.916	0.33
27_D	30_H	0.914	0.33
54_D	152_D	0.913	0.33
209_I	217_H	0.910	0.33
19_K	87_E	0.902	0.33
41_S	61_E	0.900	0.33
201_A	207_K	0.898	0.32
73_R	141_F	0.897	0.32
94_C	155_D	0.896	0.32
63_E	183_T	0.895	0.32
66_I	187_E	0.888	0.32
142_D	185_N	0.887	0.32
3_T	12_N	0.879	0.31
6_Q	103_F	0.876	0.31
168_T	183_T	0.875	0.31
211_V	214_S	0.874	0.31
18_K	125_S	0.874	0.31
79_I	90_T	0.873	0.31
153_S	157_Y	0.859	0.30
119_S	212_Y	0.858	0.30
139_F	142_D	0.857	0.30
156_S	161_E	0.856	0.30
176_P	181_D	0.855	0.30
95_E	187_E	0.855	0.30
212_Y	217_H	0.854	0.30
61_E	108_A	0.852	0.30
129_P	132_E	0.850	0.30
158_Q	188_E	0.847	0.30
118_Y	202_T	0.845	0.30
112_A	157_Y	0.841	0.30
139_F	152_D	0.841	0.30
39_Y	47_A	0.832	0.29
85_A	150_P	0.828	0.29
86_I	126_K	0.825	0.29
201_A	212_Y	0.820	0.28
78_D	113_T	0.815	0.28
140_E	173_E	0.808	0.28
79_I	160_V	0.805	0.28
26_K	93_I	0.804	0.28
165_N	168_T	0.801	0.28
136_F	193_T	0.800	0.27
173_E	202_T	0.797	0.27
119_S	196_Y	0.796	0.27
37_F	55_Q	0.795	0.27
142_D	158_Q	0.792	0.27
7_L	79_I	0.790	0.27
21_I	76_L	0.781	0.27
109_L	127_D	0.781	0.27
135_P	155_D	0.779	0.26
18_K	76_L	0.779	0.26
152_D	155_D	0.776	0.26
16_Q	80_E	0.772	0.26
86_I	117_E	0.770	0.26
69_D	144_D	0.763	0.26
157_Y	165_N	0.755	0.25
189_N	200_I	0.752	0.25
153_S	158_Q	0.751	0.25
19_K	22_L	0.751	0.25
135_P	140_E	0.749	0.25
185_N	191_G	0.745	0.25
26_K	130_I	0.740	0.25
69_D	73_R	0.739	0.25
42_W	55_Q	0.738	0.25
55_Q	58_E	0.737	0.25
41_S	65_D	0.737	0.25
81_H	85_A	0.727	0.24
30_H	73_R	0.726	0.24
10_L	201_A	0.721	0.24
99_K	209_I	0.719	0.24
47_A	86_I	0.718	0.24
60_Y	191_G	0.713	0.23
10_L	28_N	0.711	0.23
12_N	16_Q	0.702	0.23
59_L	67_A	0.701	0.23
98_G	106_L	0.694	0.23
149_A	154_E	0.694	0.23
16_Q	19_K	0.687	0.22
160_V	163_Y	0.686	0.22
53_G	165_N	0.685	0.22
71_H	124_V	0.683	0.22
214_S	217_H	0.682	0.22
31_F	111_T	0.673	0.22
86_I	124_V	0.670	0.22
20_D	96_V	0.670	0.22
199_F	202_T	0.670	0.22
136_F	155_D	0.667	0.22
36_A	55_Q	0.666	0.22
150_P	195_S	0.665	0.21
90_T	187_E	0.662	0.21
8_Q	126_K	0.662	0.21
169_P	179_Y	0.662	0.21
199_F	214_S	0.661	0.21
58_E	94_C	0.658	0.21
7_L	12_N	0.654	0.21
201_A	211_V	0.653	0.21
196_Y	200_I	0.646	0.21
141_F	144_D	0.644	0.21
70_L	90_T	0.642	0.21
64_K	68_L	0.639	0.20
71_H	75_H	0.638	0.20
85_A	96_V	0.636	0.20
211_V	217_H	0.635	0.20
172_M	183_T	0.635	0.20
53_G	56_A	0.628	0.20
81_H	189_N	0.628	0.20
151_Y	154_E	0.623	0.20
153_S	156_S	0.618	0.20
53_G	97_S	0.617	0.20
80_E	190_I	0.616	0.20
114_T	197_E	0.616	0.20
58_E	115_L	0.613	0.19
191_G	194_E	0.608	0.19
60_Y	95_E	0.606	0.19
18_K	56_A	0.605	0.19
48_Y	56_A	0.605	0.19
74_E	157_Y	0.605	0.19
12_N	99_K	0.604	0.19
35_S	88_N	0.603	0.19
168_T	171_D	0.602	0.19
8_Q	130_I	0.596	0.19
84_K	109_L	0.592	0.19
25_F	63_E	0.591	0.19
136_F	158_Q	0.588	0.18
141_F	148_R	0.586	0.18
11_K	15_E	0.586	0.18
174_N	184_M	0.584	0.18
82_S	157_Y	0.582	0.18
17_T	180_D	0.575	0.18
134_T	150_P	0.573	0.18
15_E	98_G	0.572	0.18
17_T	56_A	0.571	0.18
119_S	161_E	0.571	0.18
10_L	202_T	0.570	0.18
118_Y	203_D	0.570	0.18
21_I	72_E	0.569	0.18
39_Y	192_N	0.568	0.18
61_E	68_L	0.568	0.18
16_Q	53_G	0.565	0.18
93_I	97_S	0.565	0.18
198_N	214_S	0.563	0.18
23_N	156_S	0.562	0.18
139_F	174_N	0.561	0.18
149_A	198_N	0.560	0.17
153_S	192_N	0.557	0.17
84_K	87_E	0.556	0.17
154_E	187_E	0.555	0.17
13_E	205_T	0.555	0.17
161_E	170_Q	0.553	0.17
142_D	191_G	0.552	0.17
153_S	161_E	0.551	0.17
40_D	178_S	0.551	0.17
159_D	162_K	0.549	0.17
8_Q	15_E	0.548	0.17
19_K	23_N	0.543	0.17
75_H	85_A	0.543	0.17
168_T	178_S	0.542	0.17
161_E	176_P	0.541	0.17
58_E	179_Y	0.540	0.17
134_T	167_Q	0.536	0.17
95_E	133_E	0.536	0.17
142_D	151_Y	0.535	0.17
24_R	70_L	0.535	0.17
53_G	57_T	0.535	0.17
189_N	211_V	0.533	0.17
150_P	193_T	0.531	0.17
60_Y	93_I	0.529	0.16
85_A	119_S	0.529	0.16
53_G	167_Q	0.529	0.16
34_N	99_K	0.528	0.16
103_F	144_D	0.528	0.16
60_Y	153_S	0.526	0.16
176_P	209_I	0.524	0.16
88_N	117_E	0.524	0.16
112_A	176_P	0.522	0.16
138_Q	141_F	0.521	0.16
58_E	91_Y	0.519	0.16
4_K	196_Y	0.518	0.16
85_A	122_D	0.518	0.16
187_E	210_T	0.516	0.16
71_H	167_Q	0.515	0.16
37_F	62_R	0.513	0.16
77_R	116_A	0.512	0.16
48_Y	78_D	0.512	0.16
31_F	66_I	0.512	0.16
161_E	171_D	0.511	0.16
164_G	178_S	0.510	0.16
43_G	88_N	0.509	0.16
4_K	88_N	0.509	0.16
80_E	88_N	0.508	0.16
59_L	157_Y	0.508	0.16
26_K	84_K	0.508	0.16
137_G	184_M	0.506	0.16
29_D	124_V	0.505	0.16
88_N	205_T	0.503	0.16
207_K	213_Q	0.503	0.16
200_I	214_S	0.501	0.16
65_D	168_T	0.501	0.16
155_D	179_Y	0.500	0.15

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4ijjA	1	0.4895	100	0.677	Contact Map
1tjlA	2	0.5063	100	0.703	Contact Map
2kq9A	1	0.4351	99.9	0.736	Contact Map
2kgoA	1	0.3598	99.8	0.774	Contact Map
2lo3A	1	0.1841	66.8	0.954	Contact Map
3w0fA	1	0.477	54.7	0.958	Contact Map
3mhsE	1	0.3556	51.2	0.959	Contact Map
1k3xA	1	0.4519	51	0.959	Contact Map
1lkoA	3	0.5272	47.5	0.959	Contact Map
3pwfA	4	0.4979	45.3	0.96	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0084 seconds.