SCOA - BACSU - GREMLIN Contacts

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SCOA - Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit A

UniProt:	P42315	Sequences: MGKVLSSSKEAAKLIHDGDTLIAGGFGLCGIPEQLILSIRDQGVKDLTVVSNNCGVDDWGLGLLLANKQIKKMIASYVGENKIFERQFLSGELEVELVPQGTLAERIRAGGAGIPGFYTATGVGTSIAEGKEHKTFGGRTYVLERGITGDVAIVKAWKADTMGNLIFRKTARNFNPIAAMAGKITIAEAEEIVEAGELDPDHIHTPGIYVQHVVLGASQEKRIEKRTVQQASGKGEAK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	238 (221)
Sequences:	3539 (1761)
Seq/√Len:	118.5

ECOLI - ATOD YDIF
BACSU - SCOA YODS
HALSA - Q9HHP2
SULSO - Q97Z52

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
161_T	194_E	3.433	1.00
120_A	139_R	3.304	1.00
156_A	165_L	3.280	1.00
16_H	19_D	3.095	1.00
135_T	140_T	2.927	1.00
165_L	187_A	2.661	1.00
17_D	45_K	2.650	1.00
167_F	205_T	2.628	1.00
158_K	191_E	2.610	1.00
46_D	71_K	2.593	1.00
198_L	203_I	2.380	1.00
83_I	86_R	2.374	1.00
137_G	145_R	2.340	1.00
9_K	41_D	2.305	1.00
71_K	94_E	2.283	1.00
86_R	90_S	2.232	1.00
22_I	149_G	2.223	1.00
15_I	39_I	2.099	1.00
7_S	10_E	2.084	1.00
133_H	140_T	2.076	1.00
152_A	182_G	2.038	1.00
5_L	212_H	1.989	1.00
38_S	41_D	1.983	1.00
68_K	87_Q	1.961	1.00
72_K	94_E	1.926	1.00
48_T	74_I	1.905	1.00
159_A	189_A	1.869	1.00
110_G	148_T	1.861	1.00
22_I	107_I	1.855	1.00
35_L	153_I	1.828	1.00
37_L	63_L	1.797	1.00
87_Q	92_E	1.773	1.00
157_W	168_R	1.754	1.00
148_T	183_K	1.753	1.00
159_A	187_A	1.718	1.00
162_M	195_A	1.714	1.00
184_I	212_H	1.680	1.00
126_S	129_E	1.670	1.00
17_D	43_G	1.650	1.00
68_K	92_E	1.650	1.00
40_R	69_Q	1.624	1.00
116_G	143_L	1.620	1.00
14_L	212_H	1.609	1.00
161_T	195_A	1.608	1.00
50_V	147_I	1.606	1.00
199_D	202_H	1.584	1.00
123_V	140_T	1.538	1.00
64_L	69_Q	1.521	1.00
18_G	46_D	1.513	1.00
22_I	178_A	1.504	1.00
10_E	13_K	1.497	1.00
19_D	151_V	1.473	1.00
118_Y	134_K	1.465	1.00
158_K	166_I	1.460	1.00
39_I	153_I	1.456	1.00
130_G	133_H	1.427	1.00
48_T	72_K	1.427	1.00
58_D	66_A	1.423	1.00
109_A	117_F	1.413	1.00
160_D	164_N	1.400	1.00
159_A	192_I	1.395	1.00
96_E	106_R	1.377	1.00
23_A	153_I	1.351	1.00
132_E	137_G	1.340	1.00
179_A	185_T	1.322	1.00
115_P	136_F	1.305	1.00
151_V	184_I	1.303	1.00
15_I	19_D	1.282	1.00
128_A	133_H	1.280	1.00
17_D	44_V	1.271	0.99
67_N	92_E	1.268	0.99
2_G	161_T	1.265	0.99
135_T	138_G	1.264	0.99
50_V	149_G	1.263	0.99
12_A	38_S	1.257	0.99
20_T	50_V	1.252	0.99
31_I	36_I	1.223	0.99
158_K	193_V	1.217	0.99
40_R	66_A	1.212	0.99
8_S	38_S	1.198	0.99
9_K	38_S	1.190	0.99
194_E	197_E	1.184	0.99
102_T	119_T	1.179	0.99
72_K	96_E	1.172	0.99
38_S	42_Q	1.171	0.99
48_T	71_K	1.170	0.99
107_I	178_A	1.164	0.99
105_E	108_R	1.138	0.99
114_I	117_F	1.131	0.99
34_Q	188_E	1.124	0.99
4_V	192_I	1.118	0.99
98_V	106_R	1.109	0.99
216_G	219_Q	1.104	0.99
23_A	36_I	1.103	0.99
43_G	69_Q	1.103	0.99
12_A	15_I	1.097	0.98
115_P	146_G	1.092	0.98
49_V	70_I	1.085	0.98
65_L	87_Q	1.083	0.98
169_K	201_D	1.080	0.98
156_A	189_A	1.077	0.98
154_V	187_A	1.073	0.98
15_I	151_V	1.071	0.98
154_V	178_A	1.056	0.98
186_I	214_V	1.049	0.98
16_H	151_V	1.049	0.98
40_R	67_N	1.042	0.98
11_A	186_I	1.040	0.98
106_R	146_G	1.035	0.98
11_A	214_V	1.029	0.98
40_R	63_L	1.016	0.98
192_I	215_L	1.014	0.97
34_Q	216_G	1.009	0.97
14_L	184_I	1.002	0.97
37_L	41_D	0.999	0.97
169_K	190_E	0.998	0.97
159_A	165_L	0.991	0.97
109_A	114_I	0.988	0.97
5_L	10_E	0.988	0.97
180_M	209_Y	0.975	0.97
107_I	181_A	0.974	0.97
12_A	42_Q	0.973	0.97
153_I	186_I	0.971	0.97
54_C	84_F	0.968	0.97
191_E	215_L	0.968	0.97
165_L	189_A	0.961	0.97
154_V	179_A	0.957	0.96
157_W	190_E	0.955	0.96
5_L	14_L	0.954	0.96
159_A	213_V	0.953	0.96
187_A	205_T	0.943	0.96
19_D	150_D	0.942	0.96
106_R	145_R	0.941	0.96
161_T	197_E	0.938	0.96
44_V	69_Q	0.934	0.96
14_L	19_D	0.930	0.96
219_Q	222_R	0.930	0.96
22_I	147_I	0.923	0.96
130_G	140_T	0.915	0.95
5_L	12_A	0.915	0.95
155_K	216_G	0.915	0.95
54_C	73_M	0.908	0.95
133_H	142_V	0.906	0.95
75_A	78_V	0.904	0.95
189_A	192_I	0.896	0.95
158_K	168_R	0.895	0.95
15_I	186_I	0.894	0.95
184_I	187_A	0.891	0.95
172_R	204_H	0.891	0.95
118_Y	143_L	0.888	0.95
118_Y	136_F	0.883	0.94
186_I	212_H	0.880	0.94
66_A	83_I	0.877	0.94
166_I	202_H	0.869	0.94
83_I	87_Q	0.861	0.94
15_I	153_I	0.860	0.94
77_Y	80_E	0.858	0.94
178_A	182_G	0.851	0.93
14_L	151_V	0.850	0.93
21_L	153_I	0.841	0.93
88_F	95_V	0.840	0.93
123_V	142_V	0.839	0.93
22_I	50_V	0.829	0.92
165_L	205_T	0.829	0.92
136_F	143_L	0.822	0.92
116_G	145_R	0.821	0.92
218_S	221_K	0.818	0.92
108_R	112_A	0.814	0.92
167_F	176_P	0.813	0.92
17_D	46_D	0.813	0.92
185_T	211_Q	0.813	0.92
65_L	70_I	0.810	0.91
116_G	134_K	0.807	0.91
172_R	201_D	0.802	0.91
13_K	42_Q	0.800	0.91
24_G	175_N	0.792	0.91
105_E	114_I	0.790	0.90
59_W	222_R	0.788	0.90
20_T	149_G	0.786	0.90
193_V	197_E	0.778	0.90
128_A	142_V	0.775	0.90
152_A	178_A	0.771	0.89
110_G	147_I	0.770	0.89
166_I	198_L	0.763	0.89
105_E	117_F	0.759	0.89
134_K	137_G	0.758	0.89
122_G	142_V	0.756	0.88
169_K	199_D	0.752	0.88
154_V	205_T	0.749	0.88
107_I	149_G	0.748	0.88
149_G	182_G	0.746	0.88
78_V	84_F	0.745	0.88
115_P	141_Y	0.744	0.88
100_Q	104_A	0.741	0.87
136_F	145_R	0.740	0.87
131_K	144_E	0.738	0.87
116_G	146_G	0.732	0.87
34_Q	37_L	0.732	0.87
58_D	222_R	0.730	0.87
76_S	103_L	0.728	0.86
64_L	70_I	0.727	0.86
132_E	135_T	0.715	0.85
201_D	204_H	0.715	0.85
34_Q	219_Q	0.713	0.85
150_D	183_K	0.709	0.85
39_I	44_V	0.707	0.85
193_V	196_G	0.706	0.85
39_I	69_Q	0.706	0.85
155_K	219_Q	0.704	0.85
155_K	188_E	0.694	0.84
45_K	69_Q	0.693	0.84
176_P	205_T	0.692	0.84
11_A	42_Q	0.684	0.83
57_D	82_K	0.682	0.83
11_A	212_H	0.681	0.83
7_S	11_A	0.677	0.82
111_G	180_M	0.674	0.82
179_A	205_T	0.673	0.82
12_A	35_L	0.670	0.82
20_T	48_T	0.668	0.81
176_P	180_M	0.666	0.81
167_F	204_H	0.664	0.81
191_E	197_E	0.663	0.81
15_I	44_V	0.649	0.79
33_E	59_W	0.648	0.79
29_C	171_A	0.646	0.79
166_I	203_I	0.645	0.79
11_A	15_I	0.641	0.79
55_G	100_Q	0.639	0.78
51_S	61_L	0.639	0.78
76_S	100_Q	0.636	0.78
132_E	143_L	0.633	0.78
35_L	39_I	0.632	0.78
57_D	62_G	0.631	0.78
35_L	214_V	0.628	0.77
50_V	107_I	0.622	0.77
12_A	212_H	0.622	0.77
14_L	186_I	0.618	0.76
131_K	142_V	0.618	0.76
4_V	161_T	0.615	0.76
177_I	180_M	0.613	0.76
28_L	56_V	0.612	0.75
24_G	173_N	0.607	0.75
56_V	59_W	0.607	0.75
27_G	55_G	0.604	0.74
120_A	141_Y	0.604	0.74
32_P	35_L	0.604	0.74
4_V	213_V	0.600	0.74
106_R	147_I	0.600	0.74
157_W	191_E	0.599	0.74
34_Q	217_A	0.598	0.74
128_A	140_T	0.596	0.73
23_A	32_P	0.596	0.73
30_G	167_F	0.593	0.73
137_G	148_T	0.589	0.73
56_V	62_G	0.588	0.72
9_K	13_K	0.588	0.72
22_I	182_G	0.587	0.72
23_A	49_V	0.586	0.72
143_L	146_G	0.586	0.72
107_I	177_I	0.585	0.72
54_C	80_E	0.585	0.72
169_K	189_A	0.584	0.72
112_A	180_M	0.584	0.72
134_K	143_L	0.584	0.72
8_S	216_G	0.584	0.72
106_R	144_E	0.584	0.72
100_Q	175_N	0.582	0.72
166_I	204_H	0.579	0.71
2_G	5_L	0.576	0.71
23_A	51_S	0.576	0.71
219_Q	223_I	0.571	0.70
157_W	166_I	0.570	0.70
172_R	176_P	0.569	0.70
162_M	207_G	0.569	0.70
59_W	63_L	0.568	0.70
2_G	213_V	0.567	0.70
123_V	133_H	0.564	0.69
16_H	44_V	0.560	0.69
67_N	90_S	0.560	0.69
86_R	89_L	0.559	0.69
87_Q	90_S	0.559	0.69
22_I	181_A	0.559	0.69
114_I	118_Y	0.553	0.68
62_G	78_V	0.551	0.68
166_I	199_D	0.550	0.67
184_I	211_Q	0.547	0.67
110_G	149_G	0.547	0.67
73_M	84_F	0.545	0.67
58_D	62_G	0.541	0.66
155_K	189_A	0.540	0.66
53_N	61_L	0.539	0.66
85_E	89_L	0.539	0.66
220_E	223_I	0.538	0.66
217_A	220_E	0.536	0.65
27_G	80_E	0.534	0.65
39_I	64_L	0.533	0.65
87_Q	93_L	0.532	0.65
49_V	54_C	0.530	0.65
105_E	112_A	0.530	0.65
38_S	44_V	0.528	0.64
44_V	47_L	0.528	0.64
42_Q	69_Q	0.527	0.64
110_G	146_G	0.526	0.64
31_I	190_E	0.526	0.64
188_E	216_G	0.525	0.64
50_V	74_I	0.523	0.64
24_G	32_P	0.522	0.63
24_G	174_F	0.521	0.63
78_V	88_F	0.520	0.63
118_Y	123_V	0.520	0.63
155_K	190_E	0.519	0.63
27_G	53_N	0.519	0.63
73_M	93_L	0.517	0.63
28_L	33_E	0.515	0.62
5_L	184_I	0.511	0.62
85_E	88_F	0.511	0.62
33_E	216_G	0.511	0.62
123_V	128_A	0.511	0.62
78_V	81_N	0.507	0.61
158_K	202_H	0.507	0.61
52_N	174_F	0.505	0.61
74_I	96_E	0.504	0.61
118_Y	132_E	0.504	0.61
101_G	125_T	0.504	0.61
53_N	80_E	0.504	0.61
128_A	131_K	0.503	0.61
4_V	215_L	0.503	0.61
31_I	51_S	0.503	0.61
71_K	74_I	0.502	0.60
116_G	136_F	0.502	0.60
57_D	80_E	0.500	0.60

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1poiA	3	0.9748	100	0.238	Contact Map
3cdkA	2	0.9664	100	0.275	Contact Map
4kgbA	2	0.9832	100	0.286	Contact Map
3rrlA	2	0.9622	100	0.298	Contact Map
1k6dA	2	0.916	100	0.3	Contact Map
3k6mA	2	0.979	100	0.3	Contact Map
2ahuA	3	0.9916	100	0.327	Contact Map
2hj0A	2	0.8319	100	0.55	Contact Map
1xr4A	2	0.8277	100	0.554	Contact Map
3qliA	2	0.8319	100	0.557	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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