NUPG - BACSU - GREMLIN Contacts

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NUPG - Purine nucleoside transport protein NupG

UniProt:	P42312	Sequences: MYFLLNLVGLIVIMAVVFLCSPQKKKIKWRPIITLIVLELLITWFMLGTKVGSWAIGKIGDFFTWLIACASDGIAFAFPSVMANETVDFFFSALLPIIFIVTFFDILTYFGILPWLIDKIGWVISKASRLPKLESFFSIQMMFLGNTEALAVIRQQLTVLSNNRLLTFGLMSMSSISGSIIGSYLSMVPATYVFTAIPLNCLNALIIANLLNPVHVPEDEDIIYTPPKEEKKDFFSTISNSMLVGMNMVIVILAMVIGYVALTSAVNGILGVFVHGLTIQTIFAYLFSPFAFLLGLPVHDAMYVAQLMGMKLATNEFVAMLDLKNNLKSLPPHTVAVATTFLTSFANFSTVGMIYGTYNSILDGEKSTVIGRNVWKLLVSGIAVSLLSAAIVGLFVW	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	397 (393)
Sequences:	1648 (938)
Seq/√Len:	47.3

ECOLI - PSUT NUPC NUPX
BACSU - NUPG YUTK NUPC

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
69_C	268_G	4.970	1.00
300_D	331_P	4.476	1.00
298_V	301_A	4.257	1.00
365_E	368_T	3.918	1.00
267_N	280_Q	3.875	1.00
280_Q	322_D	3.722	1.00
97_I	252_I	3.685	1.00
23_Q	26_K	3.642	1.00
322_D	325_N	3.578	1.00
167_T	205_L	3.273	1.00
304_V	338_A	3.257	1.00
22_P	376_K	3.197	1.00
304_V	334_T	2.987	1.00
162_N	372_R	2.942	1.00
12_V	293_L	2.863	1.00
20_C	379_V	2.840	1.00
153_I	160_L	2.838	1.00
77_A	257_I	2.711	1.00
10_L	387_L	2.682	1.00
294_L	386_L	2.680	1.00
115_W	119_K	2.615	1.00
246_M	250_I	2.595	1.00
22_P	212_N	2.558	1.00
375_W	379_V	2.524	1.00
203_N	384_V	2.489	1.00
106_I	234_F	2.406	1.00
18_F	24_K	2.404	1.00
35_L	206_I	2.355	1.00
157_L	362_L	2.336	1.00
57_G	61_D	2.311	1.00
158_T	364_G	2.295	1.00
242_M	258_G	2.258	1.00
310_M	322_D	2.249	1.00
17_V	210_L	2.220	1.00
348_F	375_W	2.151	1.00
109_Y	231_K	2.139	1.00
323_L	333_H	2.137	1.00
106_I	238_I	2.034	1.00
66_L	103_F	2.029	0.99
22_P	162_N	2.007	0.99
243_L	251_V	1.998	0.99
72_D	75_A	1.976	0.99
288_S	305_A	1.972	0.99
140_Q	152_V	1.959	0.99
17_V	207_I	1.939	0.99
110_F	234_F	1.921	0.99
192_Y	340_T	1.895	0.99
294_L	390_A	1.866	0.99
346_A	385_S	1.862	0.99
71_S	92_S	1.847	0.99
238_I	262_L	1.841	0.99
248_M	251_V	1.823	0.99
200_N	388_S	1.812	0.99
211_L	380_S	1.801	0.99
134_E	209_N	1.793	0.99
340_T	388_S	1.779	0.99
7_L	11_I	1.769	0.99
51_V	55_A	1.761	0.99
162_N	368_T	1.758	0.99
130_L	135_S	1.729	0.98
281_T	285_Y	1.718	0.98
312_L	382_I	1.711	0.98
211_L	379_V	1.695	0.98
44_W	395_F	1.685	0.98
161_S	214_V	1.674	0.98
146_N	350_T	1.643	0.98
45_F	49_T	1.640	0.98
5_L	292_F	1.638	0.98
123_V	127_A	1.635	0.98
147_T	248_M	1.617	0.97
247_N	250_I	1.613	0.97
200_N	203_N	1.611	0.97
119_K	122_W	1.600	0.97
279_I	283_F	1.596	0.97
32_I	206_I	1.574	0.97
20_C	211_L	1.573	0.97
17_V	383_A	1.568	0.97
33_I	37_V	1.564	0.97
277_L	282_I	1.559	0.97
163_N	214_V	1.555	0.97
121_G	132_K	1.544	0.97
94_L	253_L	1.544	0.97
100_I	144_L	1.512	0.96
18_F	27_I	1.495	0.96
146_N	354_I	1.473	0.96
111_G	114_P	1.465	0.95
115_W	118_D	1.463	0.95
70_A	74_I	1.462	0.95
23_Q	215_H	1.431	0.95
288_S	298_V	1.430	0.95
64_T	68_A	1.422	0.95
55_A	58_K	1.421	0.95
165_L	368_T	1.420	0.95
4_L	8_V	1.405	0.94
166_L	380_S	1.400	0.94
249_V	253_L	1.397	0.94
313_A	348_F	1.392	0.94
292_F	298_V	1.392	0.94
261_A	349_S	1.391	0.94
8_V	292_F	1.382	0.94
185_L	190_A	1.379	0.94
346_A	382_I	1.377	0.94
173_M	354_I	1.377	0.94
105_D	109_Y	1.368	0.93
234_F	238_I	1.362	0.93
251_V	255_M	1.353	0.93
246_M	254_A	1.350	0.93
265_A	269_I	1.335	0.92
72_D	264_S	1.333	0.92
70_A	261_A	1.331	0.92
157_L	361_I	1.331	0.92
248_M	252_I	1.331	0.92
375_W	378_L	1.325	0.92
74_I	91_F	1.321	0.92
28_K	31_P	1.317	0.92
149_A	171_M	1.307	0.92
147_T	251_V	1.302	0.91
15_A	19_L	1.285	0.91
146_N	349_S	1.284	0.91
27_I	210_L	1.279	0.91
65_W	68_A	1.278	0.91
336_A	396_V	1.275	0.91
78_F	90_F	1.260	0.90
299_H	303_Y	1.253	0.90
236_S	366_K	1.250	0.90
285_Y	302_M	1.249	0.90
147_T	357_T	1.243	0.89
102_T	238_I	1.242	0.89
119_K	123_V	1.240	0.89
65_W	69_C	1.230	0.89
89_F	349_S	1.212	0.88
279_I	313_A	1.212	0.88
236_S	240_N	1.205	0.88
333_H	337_V	1.188	0.87
266_V	279_I	1.178	0.87
167_T	171_M	1.176	0.87
237_T	241_S	1.170	0.86
392_V	395_F	1.164	0.86
288_S	302_M	1.164	0.86
49_T	52_G	1.162	0.86
102_T	242_M	1.142	0.85
140_Q	144_L	1.142	0.85
378_L	382_I	1.140	0.85
161_S	216_V	1.139	0.85
137_F	149_A	1.138	0.85
291_A	308_M	1.138	0.85
96_P	179_S	1.131	0.84
280_Q	310_M	1.125	0.84
258_G	352_G	1.123	0.84
300_D	330_L	1.121	0.84
161_S	164_R	1.117	0.84
323_L	338_A	1.113	0.83
150_L	172_S	1.107	0.83
183_S	317_F	1.102	0.83
385_S	388_S	1.102	0.83
80_S	84_N	1.085	0.82
61_D	64_T	1.084	0.82
38_L	127_A	1.084	0.82
189_P	327_L	1.081	0.82
298_V	305_A	1.073	0.81
14_M	32_I	1.068	0.81
45_F	51_V	1.066	0.81
315_N	349_S	1.058	0.80
19_L	24_K	1.052	0.80
307_L	326_N	1.051	0.80
200_N	340_T	1.046	0.79
269_I	272_V	1.042	0.79
314_T	318_V	1.042	0.79
146_N	353_M	1.035	0.79
384_V	388_S	1.034	0.79
120_I	142_M	1.033	0.79
358_Y	370_I	1.033	0.79
42_I	203_N	1.030	0.78
179_S	248_M	1.029	0.78
146_N	312_L	1.029	0.78
44_W	48_G	1.029	0.78
263_T	314_T	1.027	0.78
320_M	343_T	1.026	0.78
277_L	281_T	1.026	0.78
40_L	391_I	1.020	0.78
14_M	210_L	1.017	0.78
278_T	281_T	1.015	0.77
137_F	171_M	1.011	0.77
161_S	215_H	1.008	0.77
306_Q	310_M	1.005	0.77
187_M	321_L	1.004	0.77
348_F	378_L	1.002	0.76
112_I	332_P	0.999	0.76
80_S	88_D	0.997	0.76
351_V	354_I	0.993	0.76
187_M	351_V	0.991	0.76
251_V	357_T	0.990	0.76
296_L	304_V	0.989	0.76
16_V	290_F	0.987	0.75
366_K	381_G	0.986	0.75
62_F	65_W	0.984	0.75
207_I	380_S	0.983	0.75
43_T	334_T	0.981	0.75
117_I	156_Q	0.975	0.74
43_T	305_A	0.969	0.74
59_I	62_F	0.968	0.74
67_I	182_G	0.962	0.73
16_V	361_I	0.961	0.73
98_I	245_G	0.957	0.73
378_L	381_G	0.955	0.73
28_K	33_I	0.952	0.73
74_I	261_A	0.950	0.73
55_A	59_I	0.947	0.72
21_S	210_L	0.946	0.72
157_L	168_F	0.946	0.72
152_V	252_I	0.945	0.72
270_L	277_L	0.944	0.72
13_I	387_L	0.944	0.72
124_I	128_S	0.941	0.72
181_I	193_V	0.937	0.71
141_M	175_S	0.931	0.71
311_K	317_F	0.926	0.71
13_I	207_I	0.925	0.70
81_V	88_D	0.923	0.70
130_L	205_L	0.920	0.70
18_F	210_L	0.920	0.70
327_L	335_V	0.919	0.70
35_L	128_S	0.919	0.70
86_T	92_S	0.916	0.70
171_M	201_C	0.913	0.69
40_L	395_F	0.911	0.69
326_N	329_S	0.902	0.69
30_R	34_T	0.902	0.69
351_V	378_L	0.899	0.68
144_L	152_V	0.898	0.68
197_I	200_N	0.897	0.68
180_I	349_S	0.896	0.68
139_I	183_S	0.896	0.68
6_N	333_H	0.889	0.67
330_L	335_V	0.888	0.67
16_V	379_V	0.887	0.67
68_A	71_S	0.887	0.67
43_T	326_N	0.886	0.67
5_L	8_V	0.885	0.67
117_I	176_I	0.885	0.67
167_T	208_A	0.885	0.67
83_A	88_D	0.884	0.67
113_L	155_Q	0.884	0.67
255_M	348_F	0.883	0.67
280_Q	325_N	0.882	0.67
173_M	381_G	0.879	0.67
162_N	212_N	0.876	0.66
284_A	306_Q	0.874	0.66
256_V	260_V	0.862	0.65
108_T	155_Q	0.862	0.65
76_F	89_F	0.859	0.65
351_V	374_V	0.857	0.65
93_A	249_V	0.854	0.64
104_F	144_L	0.851	0.64
82_M	85_E	0.850	0.64
110_F	113_L	0.848	0.64
351_V	370_I	0.847	0.64
37_V	293_L	0.845	0.63
233_D	277_L	0.844	0.63
70_A	96_P	0.843	0.63
106_I	262_L	0.842	0.63
206_I	385_S	0.842	0.63
49_T	53_S	0.841	0.63
162_N	373_N	0.839	0.63
34_T	128_S	0.836	0.63
138_S	205_L	0.822	0.61
8_V	154_R	0.820	0.61
141_M	181_I	0.819	0.61
257_I	272_V	0.818	0.61
263_T	306_Q	0.814	0.61
34_T	37_V	0.812	0.60
170_L	286_L	0.809	0.60
340_T	392_V	0.808	0.60
54_W	57_G	0.805	0.60
91_F	95_L	0.805	0.60
200_N	385_S	0.805	0.60
294_L	337_V	0.802	0.59
239_S	243_L	0.802	0.59
337_V	376_K	0.796	0.59
175_S	189_P	0.794	0.59
6_N	194_F	0.793	0.59
146_N	249_V	0.792	0.58
35_L	48_G	0.792	0.58
299_H	331_P	0.791	0.58
113_L	188_V	0.789	0.58
10_L	388_S	0.788	0.58
121_G	135_S	0.787	0.58
80_S	83_A	0.782	0.57
210_L	293_L	0.782	0.57
128_S	168_F	0.780	0.57
121_G	124_I	0.779	0.57
193_V	209_N	0.777	0.57
59_I	194_F	0.776	0.57
27_I	59_I	0.774	0.57
203_N	388_S	0.774	0.57
181_I	185_L	0.772	0.56
42_I	104_F	0.771	0.56
39_E	203_N	0.770	0.56
264_S	268_G	0.768	0.56
271_G	298_V	0.764	0.56
41_L	44_W	0.764	0.56
181_I	197_I	0.756	0.55
347_N	350_T	0.756	0.55
249_V	305_A	0.756	0.55
133_L	160_L	0.752	0.54
332_P	335_V	0.751	0.54
90_F	253_L	0.751	0.54
303_Y	326_N	0.750	0.54
160_L	168_F	0.747	0.54
113_L	117_I	0.744	0.54
176_I	180_I	0.743	0.54
58_K	62_F	0.741	0.53
14_M	394_L	0.741	0.53
353_M	356_G	0.740	0.53
232_K	372_R	0.738	0.53
104_F	113_L	0.738	0.53
104_F	175_S	0.735	0.53
15_A	18_F	0.735	0.53
334_T	338_A	0.733	0.53
244_V	247_N	0.733	0.53
163_N	201_C	0.733	0.53
156_Q	381_G	0.731	0.52
112_I	286_L	0.731	0.52
332_P	336_A	0.731	0.52
12_V	15_A	0.729	0.52
219_D	223_I	0.728	0.52
163_N	209_N	0.728	0.52
133_L	149_A	0.726	0.52
71_S	75_A	0.726	0.52
137_F	168_F	0.725	0.52
100_I	259_Y	0.720	0.51
147_T	180_I	0.720	0.51
303_Y	330_L	0.719	0.51
10_L	203_N	0.718	0.51
367_S	372_R	0.717	0.51
188_V	342_L	0.717	0.51
53_S	57_G	0.715	0.51
103_F	254_A	0.714	0.51
171_M	333_H	0.714	0.51
312_L	346_A	0.713	0.51
13_I	294_L	0.711	0.50
141_M	171_M	0.711	0.50
340_T	385_S	0.710	0.50
290_F	386_L	0.709	0.50
352_G	385_S	0.709	0.50
78_F	95_L	0.709	0.50
214_V	218_E	0.707	0.50
25_K	126_K	0.707	0.50
93_A	183_S	0.706	0.50
28_K	128_S	0.706	0.50
72_D	267_N	0.703	0.50
194_F	198_P	0.703	0.50
284_A	305_A	0.702	0.50
105_D	231_K	0.701	0.49
159_V	280_Q	0.700	0.49
38_L	243_L	0.699	0.49
69_C	265_A	0.699	0.49
82_M	91_F	0.698	0.49
28_K	129_R	0.698	0.49
337_V	387_L	0.696	0.49
77_A	256_V	0.693	0.49
134_E	167_T	0.691	0.48
139_I	142_M	0.689	0.48
34_T	154_R	0.689	0.48
192_Y	388_S	0.686	0.48
60_G	260_V	0.682	0.48
165_L	365_E	0.682	0.48
137_F	204_A	0.679	0.47
207_I	352_G	0.678	0.47
7_L	367_S	0.678	0.47
255_M	353_M	0.678	0.47
43_T	298_V	0.677	0.47
212_N	299_H	0.674	0.47
176_I	287_F	0.673	0.47
75_A	80_S	0.673	0.47
14_M	36_I	0.669	0.46
124_I	378_L	0.668	0.46
18_F	22_P	0.666	0.46
315_N	318_V	0.666	0.46
262_L	327_L	0.665	0.46
138_S	315_N	0.664	0.46
104_F	308_M	0.662	0.46
7_L	394_L	0.661	0.45
315_N	319_A	0.658	0.45
357_T	370_I	0.658	0.45
382_I	385_S	0.658	0.45
337_V	382_I	0.655	0.45
133_L	136_F	0.655	0.45
43_T	336_A	0.655	0.45
84_N	92_S	0.655	0.45
157_L	325_N	0.654	0.45
52_G	134_E	0.653	0.45
45_F	281_T	0.651	0.44
177_S	310_M	0.646	0.44
307_L	319_A	0.644	0.44
362_L	368_T	0.644	0.44
386_L	389_A	0.644	0.44
302_M	305_A	0.644	0.44
62_F	106_I	0.643	0.44
45_F	55_A	0.642	0.44
352_G	374_V	0.637	0.43
290_F	293_L	0.637	0.43
29_W	144_L	0.635	0.43
81_V	91_F	0.635	0.43
162_N	365_E	0.635	0.43
131_P	218_E	0.635	0.43
177_S	180_I	0.635	0.43
146_N	239_S	0.634	0.43
26_K	340_T	0.633	0.43
170_L	344_S	0.633	0.43
282_I	286_L	0.633	0.43
121_G	160_L	0.629	0.42
93_A	317_F	0.628	0.42
354_I	358_Y	0.628	0.42
64_T	189_P	0.627	0.42
246_M	253_L	0.627	0.42
141_M	201_C	0.626	0.42
300_D	334_T	0.625	0.42
296_L	334_T	0.623	0.42
101_V	175_S	0.622	0.42
253_L	256_V	0.622	0.42
36_I	391_I	0.621	0.42
231_K	240_N	0.619	0.41
111_G	115_W	0.619	0.41
103_F	262_L	0.619	0.41
122_W	127_A	0.618	0.41
45_F	337_V	0.618	0.41
41_L	129_R	0.617	0.41
8_V	12_V	0.616	0.41
316_E	319_A	0.616	0.41
315_N	347_N	0.616	0.41
35_L	139_I	0.616	0.41
113_L	200_N	0.615	0.41
218_E	221_D	0.615	0.41
157_L	270_L	0.610	0.40
296_L	338_A	0.609	0.40
111_G	255_M	0.608	0.40
53_S	191_T	0.608	0.40
249_V	252_I	0.608	0.40
334_T	339_T	0.608	0.40
65_W	268_G	0.607	0.40
108_T	114_P	0.604	0.40
14_M	27_I	0.603	0.40
94_L	249_V	0.601	0.40
99_F	134_E	0.601	0.40
141_M	149_A	0.600	0.39
217_P	221_D	0.599	0.39
160_L	392_V	0.598	0.39
267_N	278_T	0.597	0.39
151_A	248_M	0.595	0.39
8_V	293_L	0.595	0.39
169_G	354_I	0.595	0.39
157_L	269_I	0.594	0.39
169_G	178_G	0.593	0.39
58_K	61_D	0.592	0.39
154_R	296_L	0.592	0.39
135_S	145_G	0.591	0.39
40_L	44_W	0.590	0.39
390_A	393_G	0.589	0.38
62_F	66_L	0.589	0.38
4_L	122_W	0.589	0.38
18_F	392_V	0.587	0.38
51_V	54_W	0.586	0.38
325_N	329_S	0.583	0.38
391_I	394_L	0.582	0.38
131_P	164_R	0.582	0.38
30_R	129_R	0.582	0.38
252_I	261_A	0.582	0.38
192_Y	203_N	0.582	0.38
56_I	121_G	0.581	0.38
251_V	356_G	0.579	0.38
96_P	201_C	0.579	0.38
311_K	347_N	0.576	0.37
42_I	45_F	0.574	0.37
355_Y	391_I	0.574	0.37
100_I	151_A	0.573	0.37
14_M	206_I	0.573	0.37
43_T	381_G	0.572	0.37
138_S	200_N	0.571	0.37
14_M	361_I	0.571	0.37
6_N	272_V	0.569	0.37
79_P	88_D	0.569	0.37
74_I	390_A	0.569	0.37
19_L	250_I	0.568	0.36
128_S	171_M	0.568	0.36
77_A	100_I	0.565	0.36
212_N	373_N	0.565	0.36
269_I	303_Y	0.563	0.36
14_M	29_W	0.561	0.36
117_I	188_V	0.561	0.36
173_M	377_L	0.560	0.36
112_I	115_W	0.560	0.36
115_W	389_A	0.559	0.36
139_I	171_M	0.559	0.36
82_M	86_T	0.557	0.35
147_T	255_M	0.557	0.35
38_L	128_S	0.556	0.35
332_P	395_F	0.556	0.35
10_L	277_L	0.552	0.35
194_F	337_V	0.552	0.35
245_G	249_V	0.552	0.35
54_W	98_I	0.552	0.35
237_T	309_G	0.552	0.35
207_I	355_Y	0.552	0.35
243_L	250_I	0.551	0.35
183_S	190_A	0.551	0.35
266_V	356_G	0.551	0.35
41_L	45_F	0.550	0.35
346_A	350_T	0.550	0.35
192_Y	336_A	0.550	0.35
297_P	303_Y	0.549	0.35
240_N	366_K	0.548	0.35
101_V	151_A	0.547	0.35
141_M	172_S	0.547	0.35
310_M	315_N	0.547	0.35
182_G	186_S	0.547	0.35
266_V	328_K	0.546	0.34
175_S	333_H	0.546	0.34
136_F	152_V	0.546	0.34
349_S	353_M	0.544	0.34
70_A	207_I	0.544	0.34
144_L	357_T	0.543	0.34
382_I	386_L	0.542	0.34
130_L	163_N	0.542	0.34
6_N	394_L	0.540	0.34
188_V	343_T	0.540	0.34
140_Q	200_N	0.539	0.34
4_L	238_I	0.539	0.34
15_A	210_L	0.538	0.34
206_I	374_V	0.537	0.34
350_T	353_M	0.536	0.34
97_I	317_F	0.535	0.33
248_M	357_T	0.535	0.33
142_M	201_C	0.535	0.33
77_A	253_L	0.533	0.33
106_I	254_A	0.533	0.33
54_W	58_K	0.532	0.33
252_I	371_G	0.532	0.33
108_T	113_L	0.530	0.33
321_L	324_K	0.528	0.33
235_F	348_F	0.528	0.33
106_I	110_F	0.526	0.33
74_I	195_T	0.526	0.33
4_L	215_H	0.526	0.33
152_V	204_A	0.526	0.33
100_I	312_L	0.525	0.33
5_L	9_G	0.525	0.33
49_T	211_L	0.524	0.33
144_L	149_A	0.524	0.33
94_L	101_V	0.523	0.32
64_T	348_F	0.522	0.32
155_Q	363_D	0.521	0.32
164_R	279_I	0.521	0.32
351_V	376_K	0.521	0.32
179_S	351_V	0.518	0.32
112_I	367_S	0.518	0.32
105_D	236_S	0.516	0.32
65_W	112_I	0.516	0.32
359_N	371_G	0.516	0.32
283_F	313_A	0.516	0.32
26_K	215_H	0.515	0.32
96_P	182_G	0.514	0.32
131_P	320_M	0.514	0.32
161_S	221_D	0.513	0.32
136_F	141_M	0.513	0.32
85_E	88_D	0.512	0.31
349_S	372_R	0.512	0.31
70_A	92_S	0.511	0.31
97_I	177_S	0.511	0.31
29_W	33_I	0.511	0.31
266_V	270_L	0.511	0.31
238_I	352_G	0.510	0.31
87_V	92_S	0.510	0.31
37_V	41_L	0.508	0.31
149_A	357_T	0.508	0.31
166_L	170_L	0.507	0.31
255_M	382_I	0.507	0.31
146_N	305_A	0.506	0.31
160_L	197_I	0.506	0.31
282_I	305_A	0.505	0.31
80_S	86_T	0.503	0.31
23_Q	306_Q	0.503	0.31
71_S	165_L	0.503	0.31
141_M	150_L	0.503	0.31
97_I	107_L	0.502	0.31
209_N	214_V	0.502	0.31
244_V	252_I	0.502	0.31
136_F	144_L	0.501	0.31
290_F	372_R	0.500	0.30
180_I	353_M	0.500	0.30

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4pd6A	3	0.9622	100	0.119	Contact Map
2cfqA	1	0.8816	37.2	0.977	Contact Map
2mofA	1	0.0806	23.9	0.979	Contact Map
4ikvA	1	0.4257	12.5	0.981	Contact Map
4f35D	2	0.8892	11.3	0.982	Contact Map
4j05A	3	0.3678	9.5	0.982	Contact Map
4oh3A	2	0.4156	5.3	0.984	Contact Map
4zw9A	1	0.3879	5.2	0.984	Contact Map
2kncB	1	0.0806	4.2	0.985	Contact Map
4o6yA	2	0.461	3.9	0.985	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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