DBPA - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

DBPA - ATP-dependent RNA helicase DbpA

UniProt:	P42305	Sequences: MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLCELANWDENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTMLFSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIEAPSQEEVARKKPEFLAKLNDRPESKKDKSEELNKDIMKLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILNGKGPHVLKVMKNTTVKGKQLKVNKANK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	479 (376)
Sequences:	26530 (14015)
Seq/√Len:	722.8

ECOLI - DEAD RECQ RHLE DBPA SRMB RECG RHLB YFJK YEJH RAPA
BACSU - DBPA CSHA CSHB RECQ RECG RECS YPRA YFML COMFA YWQA YQHH
HALSA - HELS Q9HN80 Q9HNB2 RAD25 O52003 Q9HMW5 Q9HQA5 O51997
SULSO - Q981C8 HELS Q97Y93 Q97WW1 Q97X74 HELX Q97YC4 Q97WT0 Q97ZF9 Q980C0 Q97X64 Q97ZV2 Q97ZF3 Q97YQ4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
57_G	90_I	5.132	1.00
60_L	73_A	3.964	1.00
36_A	179_M	3.528	1.00
77_T	86_V	3.481	1.00
28_V	44_V	3.253	1.00
126_G	131_V	3.240	1.00
19_G	96_F	3.174	1.00
268_D	291_Y	3.042	1.00
40_K	201_E	2.889	1.00
250_K	273_G	2.885	1.00
134_H	139_T	2.865	1.00
247_C	253_V	2.815	1.00
285_E	290_E	2.761	1.00
284_N	288_R	2.689	1.00
257_T	267_C	2.653	1.00
232_K	263_L	2.487	1.00
87_K	101_A	2.433	1.00
87_K	91_T	2.397	1.00
268_D	285_E	2.335	1.00
281_D	285_E	2.321	1.00
22_Y	54_A	2.292	1.00
328_T	340_A	2.291	1.00
247_C	256_L	2.288	1.00
317_L	342_S	2.244	1.00
162_I	166_E	2.242	1.00
265_Y	293_Y	2.230	1.00
254_N	269_K	2.218	1.00
216_E	339_K	2.133	1.00
247_C	295_V	2.023	1.00
102_T	121_S	2.013	1.00
72_Q	146_S	2.006	1.00
87_K	103_A	1.981	1.00
257_T	269_K	1.980	1.00
19_G	95_R	1.972	1.00
252_H	316_D	1.959	1.00
56_F	149_V	1.952	1.00
89_D	92_N	1.949	1.00
308_N	336_N	1.945	1.00
253_V	271_H	1.935	1.00
266_P	292_R	1.928	1.00
190_E	202_H	1.918	1.00
162_I	165_V	1.908	1.00
47_Q	50_S	1.907	1.00
60_L	149_V	1.868	1.00
268_D	282_V	1.867	1.00
260_L	295_V	1.848	1.00
280_F	284_N	1.834	1.00
257_T	261_D	1.832	1.00
300_A	304_I	1.820	1.00
311_L	341_I	1.808	1.00
136_E	167_A	1.801	1.00
63_L	147_Y	1.794	1.00
241_D	310_S	1.788	1.00
217_H	328_T	1.779	1.00
20_L	92_N	1.774	1.00
155_E	158_N	1.765	1.00
311_L	339_K	1.744	1.00
296_A	300_A	1.723	1.00
72_Q	122_H	1.720	1.00
36_A	42_L	1.710	1.00
236_M	263_L	1.702	1.00
70_K	144_R	1.673	1.00
90_I	123_I	1.659	1.00
217_H	324_Y	1.646	1.00
109_S	112_K	1.643	1.00
190_E	194_R	1.639	1.00
73_A	147_Y	1.636	1.00
218_A	339_K	1.633	1.00
163_E	166_E	1.625	1.00
84_V	280_F	1.619	1.00
228_F	259_E	1.617	1.00
166_E	195_Q	1.611	1.00
90_I	101_A	1.610	1.00
76_L	131_V	1.607	1.00
60_L	147_Y	1.604	1.00
314_N	328_T	1.587	1.00
243_C	313_I	1.582	1.00
230_L	233_D	1.581	1.00
37_L	62_E	1.576	1.00
243_C	311_L	1.561	1.00
253_V	269_K	1.549	1.00
314_N	342_S	1.548	1.00
163_E	167_A	1.545	1.00
56_F	181_F	1.541	1.00
35_A	201_E	1.538	1.00
35_A	38_E	1.524	1.00
44_V	181_F	1.519	1.00
135_I	171_H	1.517	1.00
111_D	115_A	1.515	1.00
132_L	167_A	1.494	1.00
153_A	180_L	1.481	1.00
231_L	313_I	1.471	1.00
164_Q	167_A	1.469	1.00
224_E	252_H	1.460	1.00
352_L	356_E	1.451	1.00
249_T	252_H	1.424	1.00
318_P	324_Y	1.409	1.00
259_E	263_L	1.407	1.00
240_P	243_C	1.407	1.00
154_D	302_R	1.403	1.00
231_L	315_Y	1.401	1.00
245_I	293_Y	1.398	1.00
274_M	282_V	1.385	1.00
77_T	83_A	1.379	1.00
161_F	165_V	1.369	1.00
215_I	332_G	1.367	1.00
212_T	215_I	1.359	1.00
242_S	308_N	1.343	1.00
102_T	124_V	1.338	1.00
83_A	103_A	1.329	1.00
88_E	92_N	1.319	1.00
115_A	119_Q	1.315	1.00
148_L	169_I	1.313	1.00
227_K	316_D	1.309	1.00
167_A	171_H	1.308	1.00
114_K	139_T	1.307	1.00
74_L	145_L	1.306	1.00
214_N	337_K	1.301	1.00
238_E	339_K	1.296	1.00
121_S	124_V	1.289	1.00
257_T	295_V	1.284	1.00
234_V	341_I	1.278	1.00
56_F	86_V	1.276	1.00
32_V	55_S	1.267	1.00
261_D	267_C	1.262	1.00
90_I	125_V	1.245	1.00
236_M	265_Y	1.240	1.00
285_E	291_Y	1.236	1.00
256_L	295_V	1.234	1.00
148_L	178_T	1.232	1.00
243_C	293_Y	1.227	1.00
223_R	226_N	1.223	1.00
102_T	116_E	1.221	1.00
63_L	146_S	1.219	1.00
54_A	58_I	1.218	1.00
275_I	278_D	1.214	1.00
62_E	66_W	1.214	1.00
234_V	237_T	1.205	1.00
39_R	63_L	1.194	1.00
228_F	263_L	1.185	1.00
254_N	271_H	1.183	1.00
252_H	255_Q	1.178	1.00
34_P	38_E	1.175	1.00
45_K	204_E	1.173	1.00
256_L	315_Y	1.172	1.00
76_L	126_G	1.165	1.00
126_G	140_L	1.160	1.00
189_I	192_L	1.155	1.00
61_C	94_G	1.153	1.00
166_E	170_K	1.150	1.00
18_E	23_T	1.146	1.00
314_N	327_R	1.145	1.00
284_N	287_K	1.135	1.00
110_F	137_K	1.131	1.00
232_K	236_M	1.128	1.00
36_A	59_P	1.122	1.00
39_R	177_T	1.115	1.00
320_E	323_S	1.101	1.00
282_V	291_Y	1.101	1.00
353_A	356_E	1.098	1.00
270_I	300_A	1.095	1.00
84_V	88_E	1.095	1.00
88_E	91_T	1.085	1.00
161_F	166_E	1.075	1.00
186_P	189_I	1.075	1.00
234_V	313_I	1.074	1.00
356_E	362_E	1.073	1.00
189_I	193_S	1.064	1.00
232_K	259_E	1.064	1.00
35_A	203_I	1.059	1.00
253_V	257_T	1.052	1.00
111_D	114_K	1.049	1.00
169_I	172_L	1.048	1.00
246_F	327_R	1.047	1.00
360_G	363_I	1.047	1.00
100_K	122_H	1.042	1.00
110_F	114_K	1.042	1.00
278_D	282_V	1.039	1.00
253_V	295_V	1.039	1.00
87_K	125_V	1.038	1.00
187_Q	191_K	1.034	1.00
27_K	31_S	1.033	1.00
115_A	118_K	1.031	1.00
278_D	281_D	1.025	1.00
234_V	238_E	1.021	1.00
274_M	278_D	1.019	1.00
133_D	137_K	1.015	1.00
192_L	196_Y	1.013	1.00
380_E	383_A	1.011	1.00
167_A	170_K	1.010	1.00
407_Y	411_G	1.006	1.00
132_L	164_Q	1.003	1.00
60_L	75_I	1.003	1.00
238_E	241_D	1.003	1.00
43_V	185_L	0.995	1.00
149_V	179_M	0.991	1.00
373_E	377_K	0.990	1.00
73_A	149_V	0.990	1.00
132_L	136_E	0.988	1.00
231_L	245_I	0.985	1.00
379_P	383_A	0.983	1.00
41_D	200_P	0.977	1.00
228_F	315_Y	0.975	1.00
60_L	90_I	0.971	1.00
94_G	97_K	0.963	1.00
190_E	193_S	0.961	1.00
226_N	229_S	0.960	1.00
349_K	353_A	0.959	1.00
64_A	73_A	0.957	1.00
312_V	331_T	0.956	1.00
258_D	261_D	0.953	1.00
64_A	99_I	0.948	1.00
405_K	409_N	0.941	1.00
83_A	125_V	0.936	1.00
75_I	90_I	0.931	1.00
105_F	108_S	0.931	1.00
65_N	97_K	0.928	1.00
27_K	30_Q	0.925	1.00
230_L	234_V	0.924	1.00
283_M	306_I	0.924	1.00
381_F	384_K	0.919	1.00
366_I	370_S	0.915	1.00
114_K	118_K	0.912	1.00
281_D	284_N	0.911	1.00
233_D	237_T	0.910	1.00
244_I	296_A	0.909	1.00
41_D	198_Q	0.904	1.00
348_E	351_F	0.902	1.00
408_F	411_G	0.902	1.00
351_F	354_D	0.901	1.00
242_S	289_G	0.899	1.00
235_L	243_C	0.895	1.00
286_F	294_L	0.892	1.00
33_I	58_I	0.889	1.00
374_V	378_K	0.888	1.00
41_D	180_L	0.888	1.00
229_S	232_K	0.887	1.00
405_K	408_F	0.882	1.00
234_V	311_L	0.879	1.00
73_A	123_I	0.877	1.00
112_K	115_A	0.877	1.00
373_E	376_R	0.874	1.00
35_A	42_L	0.872	1.00
41_D	197_M	0.872	1.00
94_G	101_A	0.870	1.00
224_E	345_T	0.864	1.00
219_V	344_V	0.864	1.00
188_D	191_K	0.861	1.00
110_F	113_Q	0.858	1.00
65_N	72_Q	0.856	1.00
43_V	193_S	0.855	1.00
65_N	68_E	0.853	1.00
158_N	162_I	0.853	1.00
228_F	232_K	0.850	1.00
258_D	262_D	0.849	1.00
24_E	30_Q	0.847	1.00
82_L	303_G	0.847	1.00
220_I	230_L	0.845	1.00
63_L	177_T	0.845	1.00
319_L	351_F	0.844	1.00
233_D	236_M	0.842	1.00
146_S	176_R	0.841	1.00
230_L	343_F	0.838	1.00
216_E	364_Q	0.836	1.00
228_F	256_L	0.832	1.00
354_D	358_Y	0.827	1.00
108_S	113_Q	0.825	1.00
85_Q	305_D	0.822	1.00
244_I	294_L	0.821	1.00
255_Q	259_E	0.818	1.00
82_L	85_Q	0.818	1.00
31_S	35_A	0.816	1.00
113_Q	116_E	0.816	1.00
238_E	311_L	0.814	1.00
242_S	310_S	0.812	1.00
283_M	286_F	0.810	1.00
41_D	178_T	0.805	1.00
154_D	326_H	0.804	1.00
147_Y	177_T	0.796	1.00
228_F	255_Q	0.794	1.00
318_P	327_R	0.794	1.00
113_Q	117_L	0.793	1.00
355_I	359_I	0.793	1.00
53_T	86_V	0.793	1.00
54_A	93_I	0.792	1.00
407_Y	410_G	0.790	1.00
251_E	255_Q	0.790	1.00
229_S	233_D	0.789	1.00
55_S	59_P	0.789	1.00
405_K	410_G	0.788	1.00
314_N	318_P	0.788	1.00
114_K	134_H	0.788	1.00
254_N	258_D	0.784	1.00
64_A	122_H	0.782	1.00
216_E	337_K	0.774	1.00
135_I	142_L	0.773	1.00
354_D	357_E	0.772	1.00
298_D	327_R	0.772	1.00
32_V	36_A	0.772	1.00
242_S	309_I	0.765	1.00
158_N	161_F	0.764	1.00
271_H	274_M	0.763	1.00
188_D	192_L	0.762	1.00
142_L	145_L	0.761	1.00
363_I	367_E	0.759	1.00
67_D	146_S	0.757	1.00
101_A	104_V	0.757	1.00
356_E	359_I	0.753	1.00
45_K	185_L	0.752	1.00
200_P	203_I	0.750	1.00
71_P	145_L	0.750	1.00
192_L	195_Q	0.749	1.00
191_K	194_R	0.747	1.00
89_D	93_I	0.741	1.00
301_A	323_S	0.741	1.00
112_K	116_E	0.738	1.00
234_V	343_F	0.736	1.00
232_K	265_Y	0.734	1.00
367_E	370_S	0.734	1.00
197_M	200_P	0.731	1.00
202_H	205_V	0.730	1.00
276_Q	280_F	0.728	1.00
298_D	323_S	0.727	1.00
173_P	176_R	0.725	1.00
58_I	61_C	0.723	1.00
366_I	371_Q	0.722	1.00
48_T	183_A	0.720	1.00
248_R	319_L	0.718	1.00
280_F	283_M	0.718	1.00
104_V	113_Q	0.715	1.00
348_E	352_L	0.715	1.00
32_V	44_V	0.715	1.00
375_A	378_K	0.715	1.00
134_H	138_G	0.715	1.00
352_L	363_I	0.714	1.00
61_C	97_K	0.705	1.00
40_K	199_N	0.705	1.00
46_S	50_S	0.704	1.00
302_R	326_H	0.702	1.00
350_R	354_D	0.702	1.00
58_I	62_E	0.701	1.00
268_D	294_L	0.699	1.00
33_I	37_L	0.698	1.00
364_Q	367_E	0.696	1.00
282_V	294_L	0.696	1.00
222_V	230_L	0.694	1.00
57_G	61_C	0.693	1.00
289_G	292_R	0.692	1.00
165_V	168_I	0.691	1.00
110_F	134_H	0.689	1.00
406_L	409_N	0.688	1.00
307_E	336_N	0.688	1.00
231_L	256_L	0.687	1.00
211_T	214_N	0.686	1.00
183_A	329_G	0.685	1.00
76_L	156_M	0.684	1.00
214_N	332_G	0.681	1.00
379_P	382_L	0.679	1.00
245_I	315_Y	0.678	1.00
372_E	376_R	0.678	1.00
57_G	94_G	0.677	1.00
352_L	355_I	0.677	1.00
35_A	40_K	0.676	1.00
147_Y	179_M	0.675	1.00
31_S	205_V	0.675	1.00
34_P	37_L	0.674	1.00
399_L	407_Y	0.673	1.00
235_L	265_Y	0.672	1.00
211_T	217_H	0.672	1.00
56_F	77_T	0.672	1.00
31_S	203_I	0.669	1.00
377_K	380_E	0.669	1.00
270_I	299_V	0.669	1.00
113_Q	134_H	0.669	1.00
367_E	371_Q	0.667	1.00
227_K	234_V	0.666	1.00
347_F	350_R	0.664	1.00
381_F	385_L	0.663	1.00
130_R	133_D	0.663	1.00
221_Q	365_K	0.661	1.00
309_I	331_T	0.660	1.00
406_L	410_G	0.659	1.00
91_T	101_A	0.659	1.00
79_T	302_R	0.657	1.00
192_L	197_M	0.656	1.00
373_E	378_K	0.656	1.00
345_T	348_E	0.655	1.00
368_A	371_Q	0.653	1.00
211_T	215_I	0.652	1.00
193_S	197_M	0.652	1.00
44_V	179_M	0.651	1.00
89_D	94_G	0.650	1.00
259_E	262_D	0.647	1.00
399_L	405_K	0.645	1.00
379_P	385_L	0.645	1.00
71_P	124_V	0.645	1.00
374_V	377_K	0.643	1.00
242_S	292_R	0.643	1.00
92_N	95_R	0.642	1.00
344_V	352_L	0.642	1.00
314_N	340_A	0.641	1.00
47_Q	207_A	0.640	1.00
380_E	384_K	0.639	1.00
279_R	286_F	0.636	1.00
161_F	164_Q	0.635	1.00
245_I	313_I	0.634	1.00
106_G	110_F	0.633	1.00
359_I	362_E	0.633	1.00
56_F	59_P	0.631	1.00
172_L	176_R	0.630	1.00
218_A	221_Q	0.628	1.00
54_A	89_D	0.627	1.00
159_M	163_E	0.627	1.00
31_S	201_E	0.625	1.00
132_L	135_I	0.624	1.00
277_E	281_D	0.622	1.00
193_S	196_Y	0.621	1.00
361_F	365_K	0.621	1.00
66_W	72_Q	0.620	1.00
370_S	373_E	0.620	1.00
310_S	336_N	0.620	1.00
223_R	227_K	0.619	1.00
358_Y	361_F	0.616	1.00
283_M	287_K	0.614	1.00
191_K	195_Q	0.611	1.00
244_I	309_I	0.611	1.00
377_K	381_F	0.609	1.00
84_V	105_F	0.609	1.00
321_K	358_Y	0.607	1.00
218_A	366_I	0.607	1.00
182_S	185_L	0.607	1.00
74_L	172_L	0.605	1.00
105_F	109_S	0.605	1.00
378_K	384_K	0.605	1.00
165_V	169_I	0.604	1.00
240_P	311_L	0.598	1.00
162_I	169_I	0.598	1.00
372_E	375_A	0.598	1.00
27_K	46_S	0.597	1.00
251_E	254_N	0.597	1.00
169_I	176_R	0.596	1.00
116_E	119_Q	0.596	1.00
26_T	334_A	0.595	1.00
61_C	70_K	0.594	1.00
235_L	260_L	0.592	1.00
317_L	355_I	0.592	1.00
242_S	286_F	0.591	1.00
245_I	256_L	0.591	1.00
224_E	228_F	0.589	1.00
330_R	333_R	0.589	1.00
254_N	274_M	0.589	1.00
282_V	286_F	0.588	1.00
405_K	411_G	0.588	1.00
267_C	295_V	0.585	1.00
161_F	168_I	0.584	1.00
71_P	144_R	0.583	1.00
264_G	267_C	0.583	1.00
338_G	341_I	0.583	1.00
48_T	329_G	0.581	1.00
149_V	181_F	0.580	1.00
204_E	207_A	0.580	1.00
22_Y	93_I	0.579	1.00
68_E	122_H	0.579	1.00
33_I	36_A	0.578	1.00
229_S	263_L	0.578	1.00
240_P	292_R	0.577	1.00
71_P	146_S	0.576	1.00
80_R	107_K	0.575	1.00
25_P	58_I	0.574	1.00
240_P	310_S	0.573	1.00
106_G	114_K	0.572	1.00
269_K	274_M	0.572	1.00
378_K	381_F	0.571	1.00
89_D	305_D	0.570	1.00
76_L	150_I	0.570	1.00
162_I	172_L	0.569	1.00
164_Q	168_I	0.569	1.00
248_R	252_H	0.568	1.00
58_I	93_I	0.567	1.00
229_S	259_E	0.567	1.00
45_K	202_H	0.566	1.00
356_E	365_K	0.565	1.00
356_E	360_G	0.565	1.00
86_V	89_D	0.563	1.00
65_N	122_H	0.557	1.00
124_V	140_L	0.556	1.00
251_E	273_G	0.554	1.00
168_I	172_L	0.554	1.00
106_G	113_Q	0.554	1.00
350_R	356_E	0.553	1.00
110_F	139_T	0.553	1.00
136_E	164_Q	0.552	1.00
60_L	123_I	0.552	1.00
248_R	316_D	0.552	1.00
64_A	72_Q	0.552	1.00
28_V	46_S	0.551	1.00
47_Q	206_K	0.551	1.00
101_A	125_V	0.550	1.00
406_L	411_G	0.550	1.00
235_L	238_E	0.548	1.00
180_L	193_S	0.547	1.00
81_E	85_Q	0.545	1.00
399_L	410_G	0.545	1.00
376_R	383_A	0.543	1.00
43_V	180_L	0.542	1.00
126_G	130_R	0.542	1.00
244_I	312_V	0.541	1.00
291_Y	294_L	0.541	1.00
361_F	364_Q	0.540	1.00
158_N	163_E	0.538	1.00
378_K	382_L	0.537	1.00
221_Q	344_V	0.537	1.00
380_E	385_L	0.535	1.00
163_E	170_K	0.535	1.00
186_P	193_S	0.535	1.00
28_V	32_V	0.535	1.00
247_C	315_Y	0.534	1.00
84_V	103_A	0.533	1.00
80_R	276_Q	0.532	1.00
226_N	371_Q	0.530	1.00
90_I	94_G	0.530	1.00
30_Q	34_P	0.529	1.00
270_I	296_A	0.528	1.00
91_T	95_R	0.528	1.00
86_V	125_V	0.527	1.00
69_N	122_H	0.527	1.00
221_Q	349_K	0.526	1.00
317_L	344_V	0.525	1.00
70_K	122_H	0.525	1.00
210_L	213_R	0.523	1.00
111_D	118_K	0.523	1.00
108_S	112_K	0.523	1.00
161_F	169_I	0.522	1.00
218_A	341_I	0.520	1.00
266_P	291_Y	0.520	1.00
29_Q	32_V	0.520	1.00
235_L	245_I	0.519	1.00
349_K	352_L	0.519	1.00
243_C	247_C	0.516	1.00
18_E	21_G	0.515	1.00
42_L	179_M	0.515	1.00
363_I	368_A	0.514	1.00
250_K	271_H	0.514	1.00
92_N	96_F	0.513	1.00
48_T	332_G	0.513	1.00
372_E	378_K	0.513	1.00
77_T	127_T	0.512	1.00
165_V	172_L	0.511	1.00
328_T	342_S	0.510	1.00
227_K	231_L	0.509	1.00
241_D	337_K	0.508	1.00
376_R	380_E	0.507	1.00
377_K	383_A	0.506	0.99
282_V	285_E	0.506	0.99
374_V	379_P	0.506	0.99
148_L	176_R	0.505	0.99
107_K	113_Q	0.503	0.99
64_A	68_E	0.503	0.99
286_F	309_I	0.502	0.99
98_R	101_A	0.502	0.99
104_V	134_H	0.502	0.99
57_G	101_A	0.501	0.99
266_P	285_E	0.500	0.99
399_L	406_L	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4pxaA	1	0.7829	100	0.285	Contact Map
4nhoA	1	0.7704	100	0.291	Contact Map
4c9bA	1	0.7766	100	0.292	Contact Map
4d25A	1	0.7745	100	0.297	Contact Map
3eiqA	1	0.737	100	0.298	Contact Map
2db3A	1	0.7724	100	0.298	Contact Map
4ljyA	1	0.8079	100	0.301	Contact Map
1s2mA	1	0.7871	100	0.303	Contact Map
4ct4B	1	0.7808	100	0.305	Contact Map
3fmpB	1	0.4238	100	0.314	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.012 seconds.