HUTI - BACSU - GREMLIN Contacts

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HUTI - Imidazolonepropionase

UniProt:	P42084	Sequences: MPKQIDTILINIGQLLTMESSGPRAGKSMQDLHVIEDAVVGIHEQKIVFAGQKGAEAGYEADEIIDCSGRLVTPGLVDPHTHLVFGGSREKEMNLKLQGISYLDILAQGGGILSTVKDTRAASEEELLQKAHFHLQRMLSYGTTTAEVKSGYGLEKETELKQLRVAKKLHESQPVDLVSTFMGAHAIPPEYQNDPDDFLDQMLSLLPEIKEQELASFADIFTETGVFTVSQSRRYLQKAAEAGFGLKIHADEIDPLGGAELAGKLKAVSADHLVGTSDEGIKKLAEAGTIAVLLPGTTFYLGKSTYARARAMIDEGVCVSLATDFNPGSSPTENIQLIMSIAALHLKMTAEEIWHAVTVNAAYAIGKGEEAGQLKAGRSADLVIWQAPNYMYIPYHYGVNHVHQVMKNGTIVVNREGAILG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	421 (341)
Sequences:	28326 (22298)
Seq/√Len:	1207.5

ECOLI - GUAD SSNA YAHJ CODA PHNM IADA PHYDA ALLB
BACSU - HUTI YTCJ ALLB PYRC NAGA
HALSA - HUTI Q9HQE0 MTAD Q9HNZ2 Q9HHS1 PYRC
SULSO - Q97VT3 Q97WS6 Q97XD4 Q7LXN1 Q97V65 Q97W09 Q980B7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
406_M	411_I	5.043	1.00
373_Q	378_R	4.681	1.00
67_C	384_I	4.303	1.00
70_R	403_H	4.041	1.00
404_Q	411_I	3.755	1.00
43_H	48_V	3.726	1.00
73_T	385_W	3.448	1.00
349_T	352_E	3.440	1.00
375_K	378_R	3.229	1.00
75_G	144_T	3.205	1.00
310_R	314_D	3.083	1.00
371_A	379_S	2.865	1.00
49_F	376_A	2.817	1.00
379_S	408_N	2.766	1.00
45_Q	379_S	2.731	1.00
73_T	383_V	2.625	1.00
72_V	384_I	2.562	1.00
318_C	363_Y	2.517	1.00
370_E	379_S	2.475	1.00
63_E	414_N	2.471	1.00
382_L	406_M	2.367	1.00
367_K	371_A	2.362	1.00
46_K	370_E	2.338	1.00
282_K	315_E	2.279	1.00
355_H	359_V	2.244	1.00
42_I	382_L	2.238	1.00
40_V	72_V	2.230	1.00
374_L	382_L	2.190	1.00
46_K	379_S	2.153	1.00
359_V	373_Q	2.099	1.00
352_E	355_H	2.056	1.00
405_V	413_V	2.053	1.00
70_R	386_Q	2.048	1.00
386_Q	403_H	2.030	1.00
45_Q	408_N	2.012	1.00
72_V	382_L	1.962	1.00
411_I	414_N	1.865	1.00
139_L	412_V	1.864	1.00
123_S	126_E	1.862	1.00
41_G	62_D	1.860	1.00
238_K	241_E	1.856	1.00
67_C	72_V	1.849	1.00
59_Y	62_D	1.840	1.00
70_R	384_I	1.839	1.00
260_E	264_K	1.825	1.00
383_V	402_V	1.775	1.00
270_A	273_L	1.771	1.00
35_I	38_A	1.745	1.00
73_T	76_L	1.728	1.00
40_V	374_L	1.727	1.00
237_Q	241_E	1.678	1.00
140_S	413_V	1.657	1.00
261_L	265_L	1.654	1.00
282_K	286_E	1.651	1.00
47_I	374_L	1.620	1.00
320_S	364_A	1.611	1.00
40_V	382_L	1.609	1.00
41_G	49_F	1.608	1.00
39_V	53_K	1.598	1.00
355_H	360_N	1.582	1.00
313_I	352_E	1.558	1.00
360_N	363_Y	1.540	1.00
308_R	311_A	1.533	1.00
278_D	311_A	1.531	1.00
229_V	233_R	1.524	1.00
384_I	406_M	1.522	1.00
312_M	317_V	1.502	1.00
50_A	376_A	1.472	1.00
203_L	207_P	1.455	1.00
71_L	387_A	1.437	1.00
233_R	237_Q	1.432	1.00
359_V	363_Y	1.430	1.00
281_I	315_E	1.425	1.00
404_Q	414_N	1.425	1.00
283_K	287_A	1.390	1.00
164_R	168_K	1.390	1.00
367_K	370_E	1.371	1.00
363_Y	373_Q	1.363	1.00
77_V	361_A	1.352	1.00
228_T	231_Q	1.349	1.00
205_L	209_I	1.346	1.00
79_P	320_S	1.338	1.00
214_L	217_F	1.338	1.00
258_G	262_A	1.332	1.00
369_E	378_R	1.331	1.00
384_I	404_Q	1.327	1.00
407_K	412_V	1.319	1.00
284_L	291_A	1.312	1.00
354_W	358_T	1.309	1.00
388_P	391_M	1.307	1.00
138_M	146_A	1.300	1.00
290_I	318_C	1.300	1.00
257_G	261_L	1.300	1.00
196_D	200_D	1.272	1.00
320_S	360_N	1.272	1.00
230_S	233_R	1.264	1.00
247_K	271_D	1.262	1.00
238_K	242_A	1.262	1.00
258_G	261_L	1.261	1.00
42_I	406_M	1.259	1.00
38_A	51_G	1.259	1.00
180_T	183_G	1.255	1.00
41_G	48_V	1.249	1.00
234_R	237_Q	1.248	1.00
245_G	366_G	1.243	1.00
320_S	361_A	1.231	1.00
290_I	364_A	1.231	1.00
41_G	59_Y	1.229	1.00
38_A	52_Q	1.227	1.00
260_E	263_G	1.227	1.00
39_V	51_G	1.221	1.00
79_P	361_A	1.218	1.00
200_D	203_L	1.216	1.00
197_D	201_Q	1.216	1.00
311_A	314_D	1.204	1.00
359_V	378_R	1.201	1.00
73_T	354_W	1.197	1.00
79_P	292_V	1.196	1.00
279_E	282_K	1.193	1.00
273_L	291_A	1.193	1.00
203_L	241_E	1.192	1.00
278_D	308_R	1.185	1.00
194_D	197_D	1.182	1.00
82_H	272_H	1.178	1.00
256_L	260_E	1.176	1.00
343_A	353_I	1.172	1.00
249_H	324_D	1.165	1.00
261_L	264_K	1.160	1.00
77_V	145_T	1.157	1.00
48_V	376_A	1.155	1.00
145_T	371_A	1.154	1.00
311_A	315_E	1.153	1.00
385_W	402_V	1.152	1.00
201_Q	204_S	1.143	1.00
216_S	219_D	1.139	1.00
263_G	287_A	1.137	1.00
172_S	176_D	1.134	1.00
63_E	411_I	1.116	1.00
61_A	64_I	1.111	1.00
239_A	246_L	1.109	1.00
283_K	286_E	1.107	1.00
207_P	211_E	1.107	1.00
266_K	269_S	1.104	1.00
79_P	365_I	1.103	1.00
67_C	70_R	1.101	1.00
65_I	406_M	1.097	1.00
204_S	207_P	1.092	1.00
336_Q	340_S	1.090	1.00
160_L	164_R	1.089	1.00
47_I	382_L	1.087	1.00
147_E	365_I	1.082	1.00
77_V	371_A	1.079	1.00
240_A	268_V	1.078	1.00
219_D	222_T	1.076	1.00
161_K	164_R	1.067	1.00
155_E	158_T	1.067	1.00
259_A	263_G	1.062	1.00
215_A	219_D	1.055	1.00
336_Q	339_M	1.049	1.00
58_G	62_D	1.045	1.00
132_H	136_Q	1.043	1.00
38_A	50_A	1.038	1.00
370_E	378_R	1.036	1.00
41_G	61_A	1.032	1.00
356_A	360_N	1.030	1.00
149_K	247_K	1.017	1.00
285_A	317_V	1.013	1.00
65_I	404_Q	1.012	1.00
202_M	209_I	1.009	1.00
199_L	203_L	1.006	1.00
277_S	280_G	1.004	1.00
208_E	212_Q	1.004	1.00
339_M	353_I	1.002	1.00
214_L	219_D	1.002	1.00
383_V	405_V	0.995	1.00
77_V	365_I	0.992	1.00
198_F	201_Q	0.991	1.00
344_L	347_K	0.991	1.00
348_M	356_A	0.987	1.00
292_V	320_S	0.986	1.00
198_F	202_M	0.985	1.00
256_L	261_L	0.984	1.00
41_G	51_G	0.981	1.00
197_D	200_D	0.977	1.00
56_E	59_Y	0.973	1.00
357_V	361_A	0.967	1.00
139_L	407_K	0.965	1.00
139_L	413_V	0.963	1.00
180_T	184_A	0.963	1.00
82_H	324_D	0.960	1.00
77_V	362_A	0.959	1.00
207_P	210_K	0.958	1.00
303_K	307_A	0.955	1.00
207_P	242_A	0.951	1.00
154_L	157_E	0.947	1.00
181_F	184_A	0.945	1.00
183_G	186_A	0.926	1.00
294_L	297_T	0.925	1.00
135_L	139_L	0.920	1.00
240_A	265_L	0.912	1.00
204_S	208_E	0.911	1.00
343_A	347_K	0.909	1.00
189_P	192_Q	0.908	1.00
218_A	221_F	0.905	1.00
51_G	56_E	0.905	1.00
78_D	323_T	0.903	1.00
341_I	345_H	0.899	1.00
214_L	218_A	0.898	1.00
39_V	56_E	0.894	1.00
402_V	405_V	0.893	1.00
34_V	351_E	0.892	1.00
193_N	197_D	0.889	1.00
185_H	188_P	0.887	1.00
195_P	198_F	0.887	1.00
285_A	315_E	0.880	1.00
219_D	224_T	0.875	1.00
256_L	264_K	0.872	1.00
80_H	324_D	0.866	1.00
184_A	188_P	0.864	1.00
58_G	61_A	0.862	1.00
219_D	225_G	0.859	1.00
78_D	81_T	0.858	1.00
260_E	283_K	0.858	1.00
276_T	312_M	0.857	1.00
273_L	276_T	0.853	1.00
80_H	249_H	0.852	1.00
196_D	199_L	0.847	1.00
163_L	166_A	0.845	1.00
166_A	169_L	0.842	1.00
83_L	134_H	0.842	1.00
39_V	49_F	0.842	1.00
335_I	357_V	0.836	1.00
263_G	267_A	0.835	1.00
222_T	225_G	0.834	1.00
174_P	177_L	0.830	1.00
335_I	339_M	0.828	1.00
338_I	341_I	0.827	1.00
32_L	355_H	0.827	1.00
213_E	219_D	0.827	1.00
187_I	190_E	0.821	1.00
318_C	360_N	0.818	1.00
233_R	265_L	0.815	1.00
166_A	171_E	0.814	1.00
270_A	284_L	0.813	1.00
183_G	188_P	0.813	1.00
262_A	265_L	0.810	1.00
137_R	140_S	0.809	1.00
173_Q	176_D	0.808	1.00
166_A	170_H	0.807	1.00
82_H	249_H	0.805	1.00
162_Q	165_V	0.803	1.00
221_F	224_T	0.802	1.00
38_A	53_K	0.799	1.00
161_K	165_V	0.796	1.00
334_N	340_S	0.795	1.00
83_L	135_L	0.790	1.00
83_L	146_A	0.785	1.00
139_L	405_V	0.785	1.00
37_D	68_S	0.784	1.00
332_T	336_Q	0.784	1.00
373_Q	376_A	0.779	1.00
124_E	164_R	0.777	1.00
257_G	260_E	0.776	1.00
208_E	211_E	0.772	1.00
145_T	381_D	0.772	1.00
51_G	57_A	0.770	1.00
205_L	208_E	0.768	1.00
81_T	138_M	0.767	1.00
76_L	357_V	0.765	1.00
351_E	355_H	0.765	1.00
40_V	50_A	0.764	1.00
362_A	372_G	0.763	1.00
337_L	340_S	0.760	1.00
250_A	270_A	0.760	1.00
57_A	62_D	0.759	1.00
200_D	204_S	0.759	1.00
136_Q	140_S	0.759	1.00
337_L	341_I	0.759	1.00
340_S	344_L	0.756	1.00
168_K	171_E	0.753	1.00
219_D	223_E	0.753	1.00
259_A	262_A	0.753	1.00
303_K	306_Y	0.753	1.00
70_R	404_Q	0.751	1.00
294_L	322_A	0.749	1.00
290_I	320_S	0.749	1.00
202_M	206_L	0.748	1.00
182_M	185_H	0.744	1.00
386_Q	401_H	0.743	1.00
133_F	136_Q	0.742	1.00
194_D	198_F	0.742	1.00
334_N	338_I	0.742	1.00
321_L	356_A	0.740	1.00
165_V	168_K	0.740	1.00
72_V	406_M	0.736	1.00
186_A	190_E	0.733	1.00
258_G	263_G	0.732	1.00
297_T	301_L	0.731	1.00
381_D	408_N	0.728	1.00
362_A	378_R	0.723	1.00
257_G	280_G	0.722	1.00
34_V	37_D	0.721	1.00
201_Q	205_L	0.720	1.00
188_P	191_Y	0.718	1.00
193_N	196_D	0.714	1.00
188_P	192_Q	0.714	1.00
202_M	205_L	0.713	1.00
220_I	223_E	0.711	1.00
128_L	165_V	0.705	1.00
37_D	53_K	0.701	1.00
284_L	289_T	0.701	1.00
165_V	169_L	0.698	1.00
38_A	374_L	0.697	1.00
294_L	298_T	0.695	1.00
218_A	225_G	0.693	1.00
159_E	166_A	0.691	1.00
128_L	132_H	0.691	1.00
195_P	202_M	0.691	1.00
205_L	210_K	0.690	1.00
404_Q	413_V	0.689	1.00
253_I	304_S	0.683	1.00
206_L	209_I	0.682	1.00
196_D	202_M	0.678	1.00
133_F	137_R	0.678	1.00
162_Q	167_K	0.677	1.00
371_A	381_D	0.676	1.00
53_K	57_A	0.674	1.00
257_G	262_A	0.669	1.00
186_A	191_Y	0.669	1.00
214_L	220_I	0.667	1.00
370_E	373_Q	0.667	1.00
206_L	210_K	0.666	1.00
154_L	159_E	0.662	1.00
145_T	367_K	0.659	1.00
262_A	268_V	0.658	1.00
144_T	405_V	0.657	1.00
170_H	174_P	0.656	1.00
237_Q	240_A	0.655	1.00
185_H	190_E	0.653	1.00
271_D	274_V	0.653	1.00
76_L	335_I	0.652	1.00
371_A	378_R	0.652	1.00
166_A	173_Q	0.651	1.00
221_F	225_G	0.651	1.00
236_L	240_A	0.648	1.00
348_M	352_E	0.648	1.00
124_E	128_L	0.647	1.00
187_I	192_Q	0.646	1.00
236_L	246_L	0.644	1.00
408_N	411_I	0.644	1.00
67_C	404_Q	0.642	1.00
76_L	402_V	0.642	1.00
171_E	176_D	0.641	1.00
229_V	264_K	0.640	1.00
159_E	162_Q	0.639	1.00
256_L	259_A	0.637	1.00
258_G	268_V	0.635	1.00
282_K	285_A	0.633	1.00
183_G	187_I	0.629	1.00
159_E	163_L	0.628	1.00
332_T	337_L	0.627	1.00
171_E	174_P	0.626	1.00
310_R	313_I	0.626	1.00
162_Q	166_A	0.625	1.00
281_I	285_A	0.625	1.00
145_T	365_I	0.624	1.00
128_L	168_K	0.623	1.00
291_A	317_V	0.623	1.00
284_L	287_A	0.622	1.00
194_D	202_M	0.622	1.00
264_K	283_K	0.618	1.00
334_N	337_L	0.617	1.00
235_Y	238_K	0.615	1.00
260_E	279_E	0.615	1.00
167_K	170_H	0.614	1.00
333_E	336_Q	0.614	1.00
310_R	352_E	0.612	1.00
37_D	50_A	0.612	1.00
217_F	221_F	0.612	1.00
67_C	382_L	0.608	1.00
281_I	311_A	0.607	1.00
220_I	224_T	0.605	1.00
181_F	185_H	0.605	1.00
258_G	269_S	0.605	1.00
382_L	411_I	0.605	1.00
144_T	381_D	0.604	1.00
339_M	357_V	0.603	1.00
229_V	261_L	0.601	1.00
65_I	411_I	0.600	1.00
71_L	385_W	0.599	1.00
258_G	265_L	0.598	1.00
184_A	187_I	0.597	1.00
263_G	289_T	0.595	1.00
170_H	173_Q	0.593	1.00
185_H	189_P	0.592	1.00
128_L	164_R	0.591	1.00
76_L	143_T	0.590	1.00
291_A	312_M	0.590	1.00
278_D	315_E	0.589	1.00
41_G	57_A	0.587	1.00
41_G	56_E	0.587	1.00
163_L	168_K	0.587	1.00
262_A	267_A	0.587	1.00
361_A	364_A	0.584	1.00
195_P	206_L	0.584	1.00
181_F	188_P	0.584	1.00
193_N	202_M	0.584	1.00
186_A	189_P	0.583	1.00
167_K	171_E	0.583	1.00
310_R	346_L	0.582	1.00
280_G	283_K	0.581	1.00
217_F	220_I	0.579	1.00
157_E	161_K	0.578	1.00
42_I	48_V	0.578	1.00
217_F	222_T	0.578	1.00
198_F	203_L	0.578	1.00
245_G	268_V	0.578	1.00
160_L	165_V	0.578	1.00
273_L	284_L	0.577	1.00
332_T	335_I	0.576	1.00
398_G	401_H	0.575	1.00
196_D	201_Q	0.575	1.00
47_I	378_R	0.575	1.00
251_D	274_V	0.574	1.00
281_I	312_M	0.573	1.00
332_T	338_I	0.572	1.00
350_A	390_Y	0.571	1.00
319_V	356_A	0.568	1.00
233_R	264_K	0.568	1.00
40_V	47_I	0.566	1.00
284_L	317_V	0.565	1.00
183_G	189_P	0.564	1.00
215_A	221_F	0.564	1.00
49_F	59_Y	0.563	1.00
295_P	298_T	0.563	1.00
184_A	189_P	0.563	1.00
84_V	151_G	0.563	1.00
231_Q	234_R	0.562	1.00
276_T	308_R	0.562	1.00
165_V	170_H	0.561	1.00
218_A	224_T	0.561	1.00
126_E	129_Q	0.559	1.00
261_L	267_A	0.559	1.00
182_M	186_A	0.559	1.00
215_A	218_A	0.557	1.00
212_Q	218_A	0.557	1.00
168_K	172_S	0.555	1.00
193_N	198_F	0.554	1.00
154_L	158_T	0.552	1.00
314_D	352_E	0.552	1.00
37_D	52_Q	0.551	1.00
213_E	218_A	0.546	1.00
147_E	271_D	0.544	1.00
149_K	271_D	0.543	1.00
185_H	191_Y	0.542	1.00
203_L	238_K	0.542	1.00
39_V	50_A	0.542	1.00
216_S	222_T	0.541	1.00
187_I	191_Y	0.539	1.00
294_L	301_L	0.537	1.00
288_G	318_C	0.537	1.00
271_D	292_V	0.536	1.00
216_S	221_F	0.535	1.00
258_G	264_K	0.534	1.00
335_I	338_I	0.534	1.00
313_I	348_M	0.534	1.00
35_I	351_E	0.533	1.00
198_F	206_L	0.533	1.00
169_L	172_S	0.533	1.00
124_E	161_K	0.531	1.00
216_S	220_I	0.531	1.00
198_F	205_L	0.530	1.00
344_L	353_I	0.530	1.00
278_D	282_K	0.529	1.00
382_L	404_Q	0.529	1.00
334_N	341_I	0.528	1.00
49_F	58_G	0.528	1.00
217_F	225_G	0.527	1.00
194_D	199_L	0.527	1.00
239_A	244_F	0.526	1.00
199_L	206_L	0.524	1.00
376_A	379_S	0.523	1.00
50_A	374_L	0.523	1.00
234_R	238_K	0.522	1.00
172_S	175_V	0.522	1.00
212_Q	215_A	0.520	1.00
214_L	224_T	0.519	1.00
215_A	220_I	0.519	1.00
323_T	334_N	0.518	1.00
53_K	56_E	0.518	1.00
76_L	354_W	0.517	1.00
341_I	346_L	0.516	1.00
321_L	357_V	0.515	1.00
212_Q	219_D	0.513	1.00
297_T	300_Y	0.513	1.00
332_T	340_S	0.513	1.00
270_A	289_T	0.513	1.00
285_A	288_G	0.513	1.00
183_G	191_Y	0.512	1.00
233_R	261_L	0.512	1.00
75_G	381_D	0.511	1.00
231_Q	235_Y	0.511	1.00
132_H	172_S	0.511	1.00
159_E	167_K	0.510	1.00
405_V	411_I	0.510	1.00
195_P	199_L	0.509	1.00
269_S	364_A	0.504	1.00
214_L	225_G	0.503	1.00
181_F	186_A	0.503	1.00
160_L	163_L	0.502	1.00
293_L	298_T	0.501	1.00
380_A	406_M	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2bb0A	2	0.981	100	0.29	Contact Map
2q09A	2	0.9406	100	0.344	Contact Map
3lnpA	2	0.9074	100	0.362	Contact Map
4dzhA	2	0.9169	100	0.372	Contact Map
3ls9A	2	0.9311	100	0.379	Contact Map
3hpaA	2	0.9026	100	0.381	Contact Map
4v1xA	5	0.9287	100	0.389	Contact Map
2pajA	2	0.8504	100	0.389	Contact Map
4f0rA	2	0.9121	100	0.39	Contact Map
2i9uA	2	0.8907	100	0.393	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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