APPA - BACSU - GREMLIN Contacts

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APPA - Oligopeptide-binding protein AppA

UniProt:	P42061	Sequences: MKRRKTALMMLSVLMVLAIFLSACSGSKSSNSSAKKSAGKPQQGGDLVVGSIGEPTLFNSLYSTDDASTDIENMLYSFLTKTDEKLNVKLSLAESIKELDGGLAYDVKIKKGVKFHDGKELTADDVVFTYSVPLSKDYKGERGSTYEMLKSVEKKGDYEVLFKLKYKDGNFYNNALDSTAILPKHILGNVPIADLEENEFNRKKPIGSGPFKFKEWKQGQYIKLEANDDYFEGRPYLDTVTYKVIPDANAAVAQLQAGDINFFNVPATDYKTAEKFNNLKIVTDLALSYVYIGWNEKNELFKDKKVRQALTTALDRESIVSQVLDGDGEVAYIPESPLSWNYPKDIDVPKFEYNEKKAKQMLAEAGWKDTNGDGILDKDGKKFSFTLKTNQGNKVREDIAVVVQEQLKKIGIEVKTQIVEWSALVEQMNPPNWDFDAMVMGWSLSTFPDQYDIFHSSQIKKGLNYVWYKNAEADKLMKDAKSISDRKQYSKEYEQIYQKIAEDQPYTFLYYPNNHMAMPENLEGYKYHPKRDLYNIEKWWLAK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	543 (488)
Sequences:	22990 (17459)
Seq/√Len:	790.3

ECOLI - OPPA YGIS NIKA YEJA SAPA DDPA DPPA MPPA GSIB YBAE SGRR
BACSU - APPA DPPE OPPA YHJP
HALSA - Q9HMW4 Q9HMI3
SULSO - Q97UG7 Q97VF7 Q97VK5 Q97UH5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
214_K	225_E	4.070	1.00
153_E	161_L	3.196	1.00
305_K	364_E	3.187	1.00
155_K	161_L	3.166	1.00
357_K	360_Q	3.122	1.00
111_K	158_Y	3.080	1.00
384_S	413_E	3.047	1.00
127_V	131_S	2.911	1.00
317_E	321_S	2.883	1.00
156_G	159_E	2.872	1.00
475_K	479_D	2.854	1.00
212_K	225_E	2.745	1.00
483_I	488_Q	2.653	1.00
384_S	415_K	2.653	1.00
299_E	302_K	2.595	1.00
127_V	154_K	2.593	1.00
312_T	357_K	2.487	1.00
386_T	417_Q	2.462	1.00
360_Q	364_E	2.453	1.00
95_S	108_K	2.438	1.00
315_D	318_S	2.427	1.00
46_D	239_T	2.386	1.00
310_L	407_L	2.378	1.00
472_E	475_K	2.336	1.00
184_K	188_G	2.332	1.00
97_K	108_K	2.325	1.00
83_D	87_N	2.312	1.00
386_T	415_K	2.278	1.00
104_A	161_L	2.263	1.00
121_L	208_S	2.254	1.00
124_D	154_K	2.227	1.00
153_E	163_K	2.221	1.00
468_Y	503_D	2.202	1.00
119_K	185_H	2.193	1.00
304_K	308_Q	2.176	1.00
106_D	161_L	2.155	1.00
80_T	96_I	2.155	1.00
116_H	227_N	2.141	1.00
488_Q	491_K	2.139	1.00
305_K	308_Q	2.133	1.00
114_K	120_E	2.119	1.00
408_K	413_E	2.119	1.00
83_D	89_K	2.094	1.00
305_K	361_M	2.090	1.00
150_K	165_K	2.090	1.00
223_K	239_T	2.056	1.00
114_K	229_D	2.033	1.00
104_A	163_K	2.020	1.00
479_D	492_E	2.017	1.00
470_N	499_K	1.982	1.00
99_L	103_L	1.971	1.00
113_V	121_L	1.942	1.00
470_N	503_D	1.941	1.00
77_S	91_S	1.941	1.00
298_N	436_D	1.939	1.00
485_D	488_Q	1.939	1.00
108_K	159_E	1.929	1.00
98_E	105_Y	1.918	1.00
254_Q	259_D	1.907	1.00
491_K	495_Q	1.900	1.00
124_D	184_K	1.886	1.00
46_D	241_T	1.868	1.00
130_Y	162_F	1.817	1.00
94_E	111_K	1.811	1.00
217_K	220_Q	1.801	1.00
50_G	260_I	1.798	1.00
212_K	228_D	1.788	1.00
215_E	223_K	1.785	1.00
473_A	496_I	1.769	1.00
404_Q	408_K	1.766	1.00
126_V	160_V	1.748	1.00
427_Q	434_D	1.747	1.00
472_E	495_Q	1.746	1.00
59_N	132_V	1.736	1.00
150_K	163_K	1.734	1.00
225_E	239_T	1.733	1.00
304_K	503_D	1.730	1.00
294_W	507_T	1.730	1.00
480_A	493_Y	1.726	1.00
122_T	125_D	1.721	1.00
215_E	221_Y	1.713	1.00
313_A	410_I	1.698	1.00
476_L	495_Q	1.677	1.00
48_V	241_T	1.675	1.00
94_E	108_K	1.673	1.00
125_D	184_K	1.665	1.00
472_E	499_K	1.664	1.00
331_A	511_Y	1.664	1.00
498_Q	502_E	1.654	1.00
151_S	163_K	1.653	1.00
112_G	120_E	1.639	1.00
363_A	368_K	1.637	1.00
480_A	492_E	1.634	1.00
471_A	475_K	1.623	1.00
117_D	183_P	1.617	1.00
214_K	239_T	1.596	1.00
124_D	157_D	1.590	1.00
221_Y	241_T	1.589	1.00
308_Q	357_K	1.570	1.00
124_D	127_V	1.569	1.00
226_A	238_D	1.557	1.00
420_E	423_A	1.553	1.00
99_L	104_A	1.543	1.00
495_Q	498_Q	1.533	1.00
354_N	357_K	1.532	1.00
317_E	330_V	1.528	1.00
119_K	183_P	1.527	1.00
256_Q	272_T	1.525	1.00
122_T	157_D	1.525	1.00
294_W	437_A	1.524	1.00
217_K	221_Y	1.519	1.00
45_G	238_D	1.509	1.00
476_L	492_E	1.506	1.00
94_E	110_K	1.505	1.00
469_K	474_D	1.505	1.00
99_L	106_D	1.479	1.00
123_A	154_K	1.477	1.00
80_T	107_V	1.476	1.00
314_L	403_V	1.475	1.00
308_Q	504_Q	1.464	1.00
297_K	467_W	1.447	1.00
271_K	274_E	1.434	1.00
492_E	495_Q	1.429	1.00
211_F	237_L	1.423	1.00
301_F	385_F	1.406	1.00
397_E	401_V	1.403	1.00
245_I	254_Q	1.403	1.00
426_E	432_N	1.401	1.00
311_T	504_Q	1.400	1.00
106_D	159_E	1.394	1.00
490_S	494_E	1.393	1.00
223_K	241_T	1.383	1.00
304_K	502_E	1.379	1.00
77_S	231_F	1.373	1.00
359_K	369_D	1.367	1.00
483_I	492_E	1.365	1.00
96_I	107_V	1.364	1.00
479_D	488_Q	1.361	1.00
382_K	413_E	1.360	1.00
183_P	186_I	1.355	1.00
368_K	382_K	1.353	1.00
359_K	363_A	1.345	1.00
389_T	416_T	1.325	1.00
417_Q	427_Q	1.317	1.00
320_V	330_V	1.316	1.00
491_K	494_E	1.311	1.00
499_K	503_D	1.307	1.00
117_D	185_H	1.306	1.00
356_K	359_K	1.304	1.00
114_K	227_N	1.302	1.00
77_S	208_S	1.302	1.00
310_L	412_I	1.297	1.00
488_Q	492_E	1.296	1.00
406_Q	409_K	1.287	1.00
48_V	261_N	1.280	1.00
280_K	520_E	1.275	1.00
116_H	212_K	1.274	1.00
127_V	152_V	1.260	1.00
475_K	478_K	1.258	1.00
214_K	223_K	1.257	1.00
65_D	68_S	1.254	1.00
298_N	302_K	1.253	1.00
108_K	158_Y	1.252	1.00
120_E	158_Y	1.252	1.00
155_K	159_E	1.251	1.00
48_V	243_K	1.250	1.00
113_V	208_S	1.244	1.00
389_T	418_I	1.242	1.00
278_N	520_E	1.238	1.00
476_L	499_K	1.237	1.00
47_L	262_F	1.235	1.00
306_V	362_L	1.224	1.00
254_Q	260_I	1.224	1.00
162_F	171_F	1.215	1.00
50_G	251_A	1.208	1.00
154_K	157_D	1.207	1.00
166_Y	482_S	1.203	1.00
301_F	310_L	1.200	1.00
479_D	483_I	1.197	1.00
387_L	414_V	1.197	1.00
402_V	406_Q	1.195	1.00
361_M	364_E	1.192	1.00
255_L	517_A	1.191	1.00
405_E	409_K	1.186	1.00
110_K	231_F	1.182	1.00
224_L	242_Y	1.179	1.00
121_L	181_I	1.178	1.00
261_N	521_N	1.175	1.00
385_F	414_V	1.168	1.00
487_K	490_S	1.166	1.00
221_Y	243_K	1.164	1.00
337_P	511_Y	1.157	1.00
116_H	229_D	1.156	1.00
293_G	438_M	1.152	1.00
472_E	476_L	1.151	1.00
110_K	113_V	1.144	1.00
81_K	89_K	1.141	1.00
90_L	96_I	1.136	1.00
261_N	519_P	1.135	1.00
44_G	238_D	1.131	1.00
318_S	406_Q	1.128	1.00
385_F	437_A	1.126	1.00
105_Y	171_F	1.119	1.00
421_W	425_V	1.119	1.00
468_Y	473_A	1.116	1.00
369_D	382_K	1.113	1.00
320_V	328_G	1.113	1.00
81_K	91_S	1.112	1.00
129_T	181_I	1.109	1.00
404_Q	416_T	1.108	1.00
355_E	359_K	1.104	1.00
447_F	450_Q	1.100	1.00
92_L	208_S	1.099	1.00
97_K	106_D	1.093	1.00
433_W	467_W	1.091	1.00
152_V	160_V	1.088	1.00
256_Q	276_F	1.088	1.00
271_K	275_K	1.086	1.00
407_L	414_V	1.085	1.00
360_Q	363_A	1.083	1.00
280_K	518_M	1.083	1.00
283_T	513_N	1.078	1.00
324_L	510_Y	1.076	1.00
120_E	157_D	1.076	1.00
16_V	19_I	1.073	1.00
148_M	168_D	1.071	1.00
304_K	504_Q	1.068	1.00
226_A	235_P	1.061	1.00
313_A	407_L	1.061	1.00
17_L	20_F	1.060	1.00
131_S	135_S	1.059	1.00
201_N	205_P	1.055	1.00
499_K	502_E	1.055	1.00
306_V	365_A	1.053	1.00
212_K	227_N	1.053	1.00
487_K	491_K	1.053	1.00
308_Q	361_M	1.051	1.00
456_S	474_D	1.049	1.00
476_L	496_I	1.046	1.00
116_H	206_I	1.040	1.00
479_D	495_Q	1.035	1.00
186_I	206_I	1.033	1.00
126_V	181_I	1.030	1.00
356_K	360_Q	1.028	1.00
282_V	518_M	1.027	1.00
128_F	184_K	1.019	1.00
107_V	162_F	1.019	1.00
92_L	113_V	1.019	1.00
71_I	224_L	1.017	1.00
94_E	158_Y	1.017	1.00
476_L	479_D	1.015	1.00
24_C	28_K	1.013	1.00
355_E	410_I	1.013	1.00
329_E	513_N	1.010	1.00
449_D	489_Y	1.009	1.00
383_F	412_I	1.007	1.00
24_C	27_S	1.004	1.00
185_H	189_N	0.997	1.00
404_Q	414_V	0.992	1.00
343_P	494_E	0.988	1.00
403_V	407_L	0.985	1.00
478_K	482_S	0.983	1.00
405_E	408_K	0.983	1.00
108_K	111_K	0.983	1.00
105_Y	172_Y	0.982	1.00
47_L	237_L	0.981	1.00
21_L	24_C	0.981	1.00
311_T	316_R	0.979	1.00
123_A	155_K	0.973	1.00
103_L	150_K	0.973	1.00
294_W	310_L	0.972	1.00
131_S	134_L	0.970	1.00
459_I	469_K	0.969	1.00
456_S	469_K	0.967	1.00
250_A	254_Q	0.967	1.00
225_E	228_D	0.965	1.00
92_L	126_V	0.964	1.00
468_Y	505_P	0.962	1.00
125_D	128_F	0.960	1.00
54_E	216_W	0.959	1.00
305_K	365_A	0.958	1.00
123_A	160_V	0.958	1.00
321_S	326_G	0.956	1.00
423_A	427_Q	0.947	1.00
260_I	263_F	0.943	1.00
400_A	416_T	0.942	1.00
115_F	125_D	0.940	1.00
473_A	500_I	0.940	1.00
226_A	234_R	0.939	1.00
459_I	474_D	0.938	1.00
78_F	91_S	0.938	1.00
480_A	496_I	0.935	1.00
451_Y	455_H	0.935	1.00
274_E	283_T	0.934	1.00
357_K	361_M	0.934	1.00
319_I	399_I	0.933	1.00
318_S	322_Q	0.932	1.00
473_A	477_M	0.932	1.00
253_A	256_Q	0.924	1.00
308_Q	312_T	0.924	1.00
324_L	328_G	0.923	1.00
171_F	175_A	0.922	1.00
320_V	510_Y	0.920	1.00
124_D	128_F	0.919	1.00
111_K	120_E	0.919	1.00
106_D	155_K	0.917	1.00
389_T	400_A	0.913	1.00
105_Y	164_L	0.913	1.00
308_Q	502_E	0.912	1.00
164_L	171_F	0.911	1.00
419_V	427_Q	0.911	1.00
312_T	351_F	0.907	1.00
168_D	174_N	0.902	1.00
388_K	427_Q	0.898	1.00
311_T	507_T	0.897	1.00
128_F	187_L	0.895	1.00
252_V	256_Q	0.890	1.00
47_L	522_L	0.890	1.00
75_L	224_L	0.889	1.00
273_A	279_L	0.888	1.00
108_K	156_G	0.888	1.00
486_R	490_S	0.886	1.00
116_H	207_G	0.884	1.00
80_T	172_Y	0.884	1.00
343_P	498_Q	0.883	1.00
398_D	401_V	0.882	1.00
276_F	279_L	0.876	1.00
367_W	383_F	0.875	1.00
315_D	406_Q	0.875	1.00
329_E	337_P	0.874	1.00
93_A	107_V	0.873	1.00
388_K	419_V	0.872	1.00
148_M	166_Y	0.870	1.00
368_K	383_F	0.870	1.00
99_L	102_G	0.867	1.00
428_M	438_M	0.867	1.00
279_L	517_A	0.864	1.00
43_Q	236_Y	0.860	1.00
103_L	163_K	0.858	1.00
116_H	213_F	0.856	1.00
455_H	478_K	0.855	1.00
355_E	409_K	0.855	1.00
473_A	499_K	0.852	1.00
80_T	93_A	0.848	1.00
269_D	272_T	0.848	1.00
101_G	104_A	0.846	1.00
77_S	230_Y	0.846	1.00
131_S	152_V	0.842	1.00
386_T	436_D	0.841	1.00
211_F	235_P	0.841	1.00
252_V	273_A	0.840	1.00
496_I	499_K	0.836	1.00
343_P	347_D	0.835	1.00
78_F	180_A	0.834	1.00
127_V	160_V	0.832	1.00
117_D	206_I	0.828	1.00
98_E	102_G	0.827	1.00
494_E	498_Q	0.826	1.00
154_K	160_V	0.825	1.00
353_Y	409_K	0.825	1.00
303_D	367_W	0.824	1.00
80_T	88_V	0.823	1.00
245_I	260_I	0.822	1.00
24_C	30_S	0.820	1.00
316_R	330_V	0.820	1.00
293_G	466_V	0.814	1.00
358_A	410_I	0.813	1.00
17_L	21_L	0.813	1.00
477_M	496_I	0.811	1.00
334_P	508_F	0.811	1.00
464_N	467_W	0.810	1.00
216_W	222_I	0.807	1.00
471_A	474_D	0.806	1.00
271_K	325_D	0.804	1.00
19_I	22_S	0.801	1.00
266_P	269_D	0.801	1.00
367_W	382_K	0.800	1.00
54_E	244_V	0.799	1.00
75_L	213_F	0.797	1.00
479_D	482_S	0.797	1.00
255_L	263_F	0.796	1.00
107_V	172_Y	0.795	1.00
255_L	279_L	0.795	1.00
312_T	361_M	0.794	1.00
92_L	121_L	0.790	1.00
76_Y	207_G	0.789	1.00
113_V	158_Y	0.789	1.00
388_K	417_Q	0.787	1.00
49_V	262_F	0.783	1.00
292_I	403_V	0.782	1.00
393_N	396_R	0.782	1.00
74_M	224_L	0.778	1.00
61_L	132_V	0.778	1.00
285_L	513_N	0.777	1.00
270_Y	274_E	0.776	1.00
309_A	362_L	0.776	1.00
226_A	237_L	0.767	1.00
495_Q	499_K	0.764	1.00
253_A	257_A	0.763	1.00
387_L	400_A	0.762	1.00
103_L	166_Y	0.760	1.00
125_D	129_T	0.759	1.00
423_A	426_E	0.757	1.00
306_V	367_W	0.755	1.00
312_T	353_Y	0.754	1.00
283_T	327_D	0.753	1.00
251_A	263_F	0.752	1.00
288_S	443_S	0.751	1.00
129_T	182_L	0.750	1.00
18_A	21_L	0.749	1.00
315_D	353_Y	0.749	1.00
296_E	505_P	0.745	1.00
313_A	355_E	0.741	1.00
24_C	29_S	0.740	1.00
401_V	416_T	0.740	1.00
60_S	182_L	0.738	1.00
13_V	19_I	0.738	1.00
149_L	152_V	0.737	1.00
224_L	240_V	0.736	1.00
112_G	158_Y	0.736	1.00
213_F	222_I	0.735	1.00
314_L	319_I	0.734	1.00
361_M	365_A	0.732	1.00
42_Q	45_G	0.732	1.00
109_I	121_L	0.732	1.00
460_K	469_K	0.732	1.00
45_G	236_Y	0.731	1.00
228_D	238_D	0.730	1.00
20_F	23_A	0.727	1.00
148_M	165_K	0.727	1.00
397_E	418_I	0.724	1.00
201_N	204_K	0.724	1.00
292_I	437_A	0.724	1.00
303_D	365_A	0.723	1.00
273_A	517_A	0.720	1.00
456_S	459_I	0.719	1.00
310_L	385_F	0.717	1.00
27_S	30_S	0.717	1.00
408_K	412_I	0.717	1.00
186_I	190_V	0.717	1.00
113_V	231_F	0.714	1.00
333_I	497_Y	0.713	1.00
54_E	218_Q	0.712	1.00
362_L	367_W	0.711	1.00
424_L	438_M	0.711	1.00
389_T	397_E	0.710	1.00
344_K	347_D	0.709	1.00
297_K	433_W	0.708	1.00
75_L	207_G	0.708	1.00
310_L	437_A	0.708	1.00
262_F	522_L	0.707	1.00
407_L	437_A	0.706	1.00
454_F	457_S	0.705	1.00
319_I	402_V	0.704	1.00
283_T	515_H	0.703	1.00
50_G	245_I	0.703	1.00
45_G	237_L	0.701	1.00
468_Y	499_K	0.700	1.00
185_H	188_G	0.700	1.00
47_L	240_V	0.700	1.00
154_K	161_L	0.699	1.00
278_N	519_P	0.699	1.00
91_S	231_F	0.698	1.00
408_K	414_V	0.698	1.00
314_L	407_L	0.698	1.00
225_E	238_D	0.695	1.00
96_I	172_Y	0.695	1.00
290_V	396_R	0.694	1.00
310_L	507_T	0.693	1.00
489_Y	493_Y	0.693	1.00
74_M	240_V	0.692	1.00
306_V	383_F	0.690	1.00
387_L	439_V	0.690	1.00
84_E	526_K	0.689	1.00
107_V	175_A	0.688	1.00
407_L	410_I	0.685	1.00
401_V	404_Q	0.685	1.00
362_L	383_F	0.685	1.00
149_L	162_F	0.683	1.00
298_N	301_F	0.683	1.00
152_V	162_F	0.683	1.00
419_V	423_A	0.679	1.00
82_T	88_V	0.679	1.00
97_K	100_D	0.677	1.00
243_K	254_Q	0.675	1.00
28_K	31_N	0.673	1.00
169_G	489_Y	0.673	1.00
123_A	127_V	0.673	1.00
294_W	301_F	0.672	1.00
369_D	383_F	0.671	1.00
312_T	352_E	0.670	1.00
388_K	435_F	0.667	1.00
366_G	369_D	0.667	1.00
115_F	181_I	0.667	1.00
130_Y	175_A	0.665	1.00
232_E	235_P	0.665	1.00
128_F	188_G	0.663	1.00
61_L	133_P	0.662	1.00
183_P	206_I	0.662	1.00
79_L	93_A	0.662	1.00
63_S	72_E	0.661	1.00
13_V	16_V	0.661	1.00
44_G	236_Y	0.660	1.00
451_Y	457_S	0.659	1.00
134_L	165_K	0.658	1.00
12_S	15_M	0.656	1.00
401_V	405_E	0.656	1.00
245_I	251_A	0.656	1.00
109_I	158_Y	0.651	1.00
115_F	185_H	0.649	1.00
71_I	222_I	0.648	1.00
16_V	20_F	0.647	1.00
478_K	481_K	0.647	1.00
15_M	18_A	0.646	1.00
301_F	306_V	0.645	1.00
25_S	28_K	0.644	1.00
103_L	167_K	0.643	1.00
212_K	229_D	0.643	1.00
362_L	410_I	0.643	1.00
115_F	207_G	0.642	1.00
311_T	351_F	0.642	1.00
313_A	353_Y	0.641	1.00
226_A	233_G	0.641	1.00
277_N	520_E	0.641	1.00
341_N	490_S	0.641	1.00
127_V	153_E	0.641	1.00
518_M	525_Y	0.640	1.00
121_L	158_Y	0.639	1.00
319_I	403_V	0.638	1.00
362_L	365_A	0.637	1.00
76_Y	205_P	0.637	1.00
492_E	496_I	0.636	1.00
170_N	449_D	0.635	1.00
122_T	158_Y	0.634	1.00
247_D	250_A	0.633	1.00
213_F	216_W	0.631	1.00
390_N	396_R	0.631	1.00
474_D	478_K	0.630	1.00
82_T	176_L	0.628	1.00
26_G	29_S	0.628	1.00
115_F	121_L	0.627	1.00
100_D	104_A	0.627	1.00
222_I	244_V	0.626	1.00
452_D	455_H	0.625	1.00
255_L	519_P	0.624	1.00
296_E	466_V	0.624	1.00
399_I	403_V	0.622	1.00
317_E	320_V	0.619	1.00
340_W	486_R	0.618	1.00
407_L	412_I	0.618	1.00
200_F	204_K	0.617	1.00
119_K	125_D	0.617	1.00
349_P	352_E	0.617	1.00
486_R	489_Y	0.616	1.00
14_L	18_A	0.612	1.00
505_P	508_F	0.612	1.00
303_D	306_V	0.611	1.00
131_S	151_S	0.610	1.00
115_F	208_S	0.608	1.00
128_F	132_V	0.606	1.00
211_F	226_A	0.605	1.00
390_N	393_N	0.604	1.00
237_L	522_L	0.604	1.00
519_P	522_L	0.603	1.00
98_E	172_Y	0.603	1.00
394_K	398_D	0.602	1.00
403_V	414_V	0.600	1.00
390_N	424_L	0.600	1.00
166_Y	478_K	0.597	1.00
123_A	158_Y	0.597	1.00
248_A	251_A	0.597	1.00
298_N	434_D	0.597	1.00
121_L	129_T	0.596	1.00
297_K	302_K	0.594	1.00
107_V	160_V	0.592	1.00
220_Q	243_K	0.592	1.00
289_Y	331_A	0.590	1.00
76_Y	208_S	0.588	1.00
56_T	65_D	0.587	1.00
454_F	458_Q	0.586	1.00
56_T	68_S	0.586	1.00
303_D	366_G	0.585	1.00
75_L	205_P	0.584	1.00
290_V	399_I	0.583	1.00
252_V	269_D	0.583	1.00
451_Y	481_K	0.583	1.00
363_A	369_D	0.582	1.00
394_K	397_E	0.582	1.00
473_A	476_L	0.582	1.00
109_I	113_V	0.580	1.00
421_W	440_M	0.580	1.00
343_P	497_Y	0.580	1.00
233_G	236_Y	0.579	1.00
355_E	362_L	0.579	1.00
419_V	424_L	0.579	1.00
11_L	14_L	0.579	1.00
327_D	515_H	0.578	1.00
291_Y	506_Y	0.578	1.00
359_K	410_I	0.576	1.00
211_F	239_T	0.576	1.00
455_H	458_Q	0.576	1.00
314_L	509_L	0.575	1.00
399_I	510_Y	0.574	1.00
323_V	402_V	0.574	1.00
122_T	184_K	0.573	1.00
483_I	489_Y	0.573	1.00
14_L	20_F	0.571	1.00
20_F	24_C	0.571	1.00
96_I	108_K	0.570	1.00
29_S	32_S	0.570	1.00
480_A	489_Y	0.570	1.00
88_V	172_Y	0.570	1.00
270_Y	281_I	0.570	1.00
14_L	17_L	0.567	1.00
350_K	501_A	0.567	1.00
353_Y	406_Q	0.566	1.00
228_D	234_R	0.566	1.00
314_L	507_T	0.566	1.00
362_L	412_I	0.565	1.00
280_K	523_E	0.565	1.00
123_A	156_G	0.560	1.00
63_S	68_S	0.560	1.00
365_A	369_D	0.559	1.00
255_L	260_I	0.559	1.00
58_F	216_W	0.558	1.00
104_A	153_E	0.558	1.00
320_V	324_L	0.557	1.00
128_F	185_H	0.557	1.00
79_L	126_V	0.557	1.00
367_W	412_I	0.556	1.00
354_N	360_Q	0.554	1.00
78_F	208_S	0.554	1.00
90_L	95_S	0.553	1.00
502_E	505_P	0.553	1.00
131_S	154_K	0.553	1.00
265_V	517_A	0.551	1.00
13_V	17_L	0.551	1.00
312_T	358_A	0.550	1.00
294_W	311_T	0.549	1.00
102_G	484_S	0.548	1.00
262_F	518_M	0.548	1.00
343_P	348_V	0.547	1.00
470_N	473_A	0.547	1.00
77_S	232_E	0.547	1.00
452_D	456_S	0.547	1.00
340_W	490_S	0.546	1.00
276_F	520_E	0.546	1.00
131_S	184_K	0.546	1.00
205_P	213_F	0.545	1.00
496_I	500_I	0.545	1.00
12_S	16_V	0.545	1.00
243_K	259_D	0.545	1.00
296_E	302_K	0.544	1.00
258_G	519_P	0.544	1.00
406_Q	410_I	0.544	1.00
249_N	253_A	0.544	1.00
117_D	186_I	0.544	1.00
451_Y	456_S	0.543	1.00
391_Q	418_I	0.541	1.00
249_N	269_D	0.541	1.00
300_L	383_F	0.541	1.00
15_M	19_I	0.541	1.00
455_H	481_K	0.541	1.00
300_L	436_D	0.541	1.00
227_N	230_Y	0.540	1.00
274_E	327_D	0.540	1.00
451_Y	458_Q	0.539	1.00
116_H	208_S	0.538	1.00
308_Q	351_F	0.538	1.00
213_F	224_L	0.538	1.00
425_V	429_N	0.535	1.00
140_G	143_G	0.534	1.00
12_S	19_I	0.534	1.00
484_S	488_Q	0.534	1.00
292_I	509_L	0.533	1.00
58_F	222_I	0.532	1.00
442_W	446_T	0.532	1.00
81_K	232_E	0.531	1.00
319_I	509_L	0.530	1.00
327_D	513_N	0.530	1.00
504_Q	507_T	0.529	1.00
306_V	310_L	0.528	1.00
317_E	352_E	0.528	1.00
51_S	242_Y	0.528	1.00
102_G	106_D	0.526	1.00
120_E	125_D	0.526	1.00
23_A	26_G	0.526	1.00
292_I	387_L	0.526	1.00
25_S	29_S	0.524	1.00
12_S	18_A	0.524	1.00
182_L	187_L	0.524	1.00
265_V	270_Y	0.524	1.00
51_S	55_P	0.523	1.00
65_D	421_W	0.523	1.00
447_F	451_Y	0.522	1.00
362_L	366_G	0.522	1.00
146_Y	179_T	0.521	1.00
348_V	501_A	0.520	1.00
453_I	457_S	0.520	1.00
365_A	368_K	0.519	1.00
327_D	330_V	0.519	1.00
24_C	31_N	0.519	1.00
391_Q	397_E	0.519	1.00
48_V	260_I	0.519	1.00
387_L	437_A	0.515	1.00
203_K	218_Q	0.515	1.00
312_T	354_N	0.514	1.00
351_F	504_Q	0.514	1.00
285_L	329_E	0.513	1.00
457_S	460_K	0.513	1.00
455_H	459_I	0.511	1.00
497_Y	501_A	0.511	1.00
476_L	480_A	0.511	1.00
109_I	123_A	0.510	1.00
414_V	437_A	0.510	1.00
424_L	428_M	0.509	1.00
295_N	436_D	0.508	1.00
292_I	507_T	0.507	1.00
22_S	26_G	0.507	1.00
46_D	223_K	0.507	1.00
135_S	138_Y	0.505	1.00
400_A	439_V	0.504	1.00
94_E	109_I	0.504	1.00
74_M	242_Y	0.503	1.00
119_K	184_K	0.503	1.00
26_G	30_S	0.503	1.00
115_F	183_P	0.502	1.00
262_F	516_M	0.502	1.00
128_F	182_L	0.501	1.00
334_P	506_Y	0.501	1.00
187_L	190_V	0.500	1.00
154_K	159_E	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1xocA	2	0.9227	100	0.107	Contact Map
4wedA	1	0.8619	100	0.15	Contact Map
4oevA	1	0.8895	100	0.153	Contact Map
4qflA	1	0.8803	100	0.155	Contact Map
3drfA	1	0.9024	100	0.157	Contact Map
4fajA	1	0.8803	100	0.157	Contact Map
2grvA	1	0.8858	100	0.172	Contact Map
3zs6A	1	0.8877	100	0.172	Contact Map
4oerA	1	0.895	100	0.176	Contact Map
2nooA	1	0.8858	100	0.177	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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