PKSF - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

PKSF - Polyketide biosynthesis malonyl-ACP decarboxylase PksF

UniProt:	P40804	Sequences: MTKCNLPEVVVTGVGVTASIGQGKEDFASSLLSGRHAFDVMKRSGRQKDSRFIGAEIASLSYPDRLSKKMLRKASFSSRAALVTLTEAWEEAELDDADSSRIGLVVGGSNFQQRENFEVYERYQDRSGFISPAYGLSFMDSDLCGICTDQFGITGLAYTVGGASASGQLAVIHAIQQVLSGEVDTCIALGALMDLSYMECEALRALGAMGTDKYADEPENACRPFDQNRDGFIYGESCGALVIERKETALRRGLKPYAALSGWSIKLDGNRNPDPSLEGEIHVIQKALERARLLPEDIDYINPHGTGSFIGDEIELKALRACRLSHAYINATKSITGHGLSAAGIVEIISVLLQMKKSALHPSRNLDHPIDDSFHWVNEKSISYRIKNALSLSMGFGGMNTAVCIQNIEKCGGES	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	415 (388)
Sequences:	21094 (13735)
Seq/√Len:	697.3

ECOLI - FABF FABB
BACSU - PKSF FABF PKSL PKSJ PKSN PKSM PKSR

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
281_I	321_A	3.173	1.00
261_S	406_Q	3.106	1.00
23_G	26_D	2.981	1.00
351_V	389_A	2.891	1.00
29_S	33_S	2.770	1.00
101_R	184_D	2.769	1.00
258_A	352_L	2.763	1.00
172_I	263_W	2.716	1.00
227_Q	368_H	2.633	1.00
227_Q	371_D	2.606	1.00
388_N	406_Q	2.591	1.00
7_P	247_E	2.552	1.00
91_E	257_Y	2.395	1.00
359_A	381_S	2.393	1.00
257_Y	356_K	2.377	1.00
225_F	303_P	2.315	1.00
88_A	242_V	2.295	1.00
245_R	248_T	2.285	1.00
32_L	359_A	2.202	1.00
30_S	37_A	2.192	1.00
178_V	245_R	2.137	1.00
84_T	238_C	2.117	1.00
354_Q	361_H	2.112	1.00
297_D	388_N	2.110	1.00
224_P	334_S	2.102	1.00
171_V	348_I	2.095	1.00
30_S	35_R	2.070	1.00
348_I	405_I	2.052	1.00
105_V	177_Q	2.021	1.00
8_E	261_S	1.992	1.00
244_E	254_L	1.986	1.00
281_I	285_Q	1.983	1.00
228_N	368_H	1.958	1.00
362_P	381_S	1.952	1.00
359_A	383_S	1.917	1.00
176_Q	180_S	1.913	1.00
108_G	143_L	1.907	1.00
219_E	230_D	1.885	1.00
294_L	297_D	1.879	1.00
85_L	187_I	1.861	1.00
244_E	252_R	1.860	1.00
66_L	74_A	1.849	1.00
387_K	407_N	1.827	1.00
328_Y	382_I	1.794	1.00
86_T	90_E	1.789	1.00
85_L	147_C	1.785	1.00
103_G	186_C	1.782	1.00
293_L	388_N	1.737	1.00
239_G	345_I	1.732	1.00
18_A	346_V	1.722	1.00
38_F	55_A	1.715	1.00
101_R	286_K	1.714	1.00
175_I	260_L	1.710	1.00
11_V	348_I	1.707	1.00
106_V	240_A	1.700	1.00
246_K	250_L	1.694	1.00
360_L	378_N	1.675	1.00
22_Q	26_D	1.671	1.00
248_T	251_R	1.667	1.00
353_L	357_K	1.644	1.00
228_N	367_D	1.644	1.00
375_H	382_I	1.638	1.00
281_I	322_C	1.637	1.00
189_L	240_A	1.632	1.00
235_G	339_G	1.624	1.00
27_F	332_T	1.622	1.00
148_T	157_A	1.616	1.00
11_V	352_L	1.613	1.00
183_V	186_C	1.612	1.00
348_I	391_S	1.608	1.00
353_L	356_K	1.602	1.00
241_L	348_I	1.588	1.00
15_G	84_T	1.573	1.00
177_Q	183_V	1.570	1.00
187_I	242_V	1.566	1.00
76_F	80_A	1.561	1.00
255_K	356_K	1.561	1.00
39_D	58_A	1.558	1.00
81_A	147_C	1.545	1.00
107_G	166_S	1.542	1.00
40_V	52_F	1.529	1.00
36_H	221_A	1.525	1.00
301_I	319_L	1.524	1.00
332_T	346_V	1.515	1.00
175_I	179_L	1.508	1.00
61_S	64_D	1.508	1.00
176_Q	182_E	1.501	1.00
40_V	53_I	1.500	1.00
226_D	366_L	1.499	1.00
84_T	240_A	1.494	1.00
266_K	400_N	1.490	1.00
14_V	24_K	1.476	1.00
169_L	401_T	1.470	1.00
162_G	165_A	1.470	1.00
91_E	255_K	1.466	1.00
7_P	245_R	1.466	1.00
261_S	388_N	1.460	1.00
239_G	349_I	1.432	1.00
27_F	350_S	1.425	1.00
81_A	106_V	1.420	1.00
32_L	381_S	1.420	1.00
298_I	388_N	1.403	1.00
358_S	387_K	1.401	1.00
263_W	403_V	1.397	1.00
102_I	185_T	1.389	1.00
334_S	364_R	1.389	1.00
300_Y	360_L	1.373	1.00
9_V	243_I	1.369	1.00
50_S	204_R	1.364	1.00
185_T	242_V	1.364	1.00
237_S	339_G	1.361	1.00
328_Y	360_L	1.360	1.00
176_Q	179_L	1.355	1.00
103_G	183_V	1.351	1.00
98_D	152_G	1.346	1.00
169_L	399_M	1.346	1.00
103_G	156_L	1.343	1.00
86_T	150_Q	1.340	1.00
158_Y	173_H	1.338	1.00
390_L	404_C	1.337	1.00
81_A	240_A	1.334	1.00
219_E	223_R	1.332	1.00
363_S	366_L	1.329	1.00
282_H	286_K	1.323	1.00
154_T	282_H	1.313	1.00
226_D	368_H	1.313	1.00
81_A	143_L	1.312	1.00
316_L	329_I	1.311	1.00
8_E	259_A	1.311	1.00
328_Y	378_N	1.310	1.00
144_C	159_T	1.307	1.00
223_R	228_N	1.302	1.00
29_S	35_R	1.299	1.00
226_D	367_D	1.293	1.00
7_P	10_V	1.288	1.00
384_Y	387_K	1.277	1.00
334_S	363_S	1.271	1.00
210_G	230_D	1.270	1.00
360_L	384_Y	1.266	1.00
26_D	29_S	1.266	1.00
241_L	345_I	1.266	1.00
300_Y	330_N	1.263	1.00
145_G	397_G	1.259	1.00
366_L	369_P	1.253	1.00
390_L	402_A	1.253	1.00
177_Q	182_E	1.252	1.00
264_S	283_V	1.249	1.00
257_Y	352_L	1.247	1.00
9_V	175_I	1.247	1.00
355_M	405_I	1.247	1.00
266_K	283_V	1.226	1.00
392_L	402_A	1.225	1.00
14_V	349_I	1.215	1.00
20_I	37_A	1.213	1.00
336_T	346_V	1.205	1.00
358_S	407_N	1.196	1.00
285_Q	289_E	1.191	1.00
29_S	32_L	1.190	1.00
106_V	189_L	1.181	1.00
16_V	24_K	1.178	1.00
241_L	349_I	1.178	1.00
264_S	287_A	1.176	1.00
246_K	408_I	1.170	1.00
184_D	248_T	1.166	1.00
283_V	287_A	1.163	1.00
171_V	243_I	1.157	1.00
18_A	239_G	1.157	1.00
320_R	373_S	1.146	1.00
85_L	240_A	1.143	1.00
223_R	230_D	1.142	1.00
25_E	91_E	1.136	1.00
13_G	91_E	1.133	1.00
169_L	265_I	1.127	1.00
190_G	345_I	1.122	1.00
300_Y	351_V	1.120	1.00
339_G	346_V	1.116	1.00
176_Q	290_R	1.106	1.00
88_A	240_A	1.103	1.00
319_L	329_I	1.101	1.00
36_H	365_N	1.097	1.00
262_G	290_R	1.094	1.00
299_D	387_K	1.091	1.00
55_A	235_G	1.091	1.00
332_T	336_T	1.091	1.00
157_A	267_L	1.083	1.00
288_L	298_I	1.082	1.00
31_L	350_S	1.078	1.00
8_E	246_K	1.074	1.00
286_K	290_R	1.071	1.00
179_L	290_R	1.071	1.00
174_A	188_A	1.068	1.00
246_K	259_A	1.064	1.00
299_D	384_Y	1.063	1.00
284_I	322_C	1.060	1.00
14_V	257_Y	1.059	1.00
16_V	349_I	1.058	1.00
366_L	377_V	1.057	1.00
168_Q	401_T	1.051	1.00
148_T	267_L	1.049	1.00
335_I	364_R	1.036	1.00
293_L	297_D	1.036	1.00
351_V	355_M	1.035	1.00
42_K	45_G	1.034	1.00
250_L	408_I	1.032	1.00
28_A	357_K	1.030	1.00
358_S	385_R	1.021	1.00
288_L	295_P	1.016	1.00
86_T	151_F	1.010	1.00
378_N	382_I	1.009	1.00
88_A	187_I	1.009	1.00
64_D	86_T	1.005	1.00
200_C	234_Y	1.004	1.00
323_R	390_L	1.003	1.00
171_V	403_V	1.001	1.00
89_W	151_F	1.000	1.00
16_V	27_F	0.998	1.00
317_K	321_A	0.997	1.00
84_T	87_E	0.993	1.00
42_K	56_E	0.989	1.00
12_T	244_E	0.987	1.00
168_Q	403_V	0.987	1.00
184_D	245_R	0.984	1.00
284_I	392_L	0.978	1.00
160_V	173_H	0.975	1.00
53_I	56_E	0.972	1.00
172_I	182_E	0.971	1.00
328_Y	376_W	0.970	1.00
178_V	243_I	0.967	1.00
366_L	379_E	0.965	1.00
316_L	376_W	0.965	1.00
284_I	390_L	0.963	1.00
247_E	250_L	0.960	1.00
351_V	391_S	0.960	1.00
220_N	367_D	0.958	1.00
367_D	379_E	0.948	1.00
373_S	376_W	0.940	1.00
355_M	358_S	0.936	1.00
288_L	323_R	0.933	1.00
286_K	289_E	0.933	1.00
105_V	186_C	0.932	1.00
14_V	352_L	0.932	1.00
376_W	382_I	0.929	1.00
171_V	188_A	0.927	1.00
51_R	54_G	0.927	1.00
309_F	372_D	0.926	1.00
28_A	361_H	0.918	1.00
102_I	153_I	0.916	1.00
234_Y	340_L	0.916	1.00
38_F	53_I	0.914	1.00
174_A	186_C	0.914	1.00
259_A	406_Q	0.911	1.00
167_G	190_G	0.910	1.00
15_G	88_A	0.910	1.00
175_I	290_R	0.909	1.00
52_F	56_E	0.909	1.00
352_L	405_I	0.905	1.00
21_G	30_S	0.902	1.00
249_A	256_P	0.902	1.00
25_E	29_S	0.896	1.00
305_G	311_G	0.894	1.00
288_L	293_L	0.893	1.00
237_S	346_V	0.893	1.00
54_G	57_I	0.892	1.00
173_H	176_Q	0.890	1.00
167_G	345_I	0.887	1.00
313_E	317_K	0.887	1.00
52_F	55_A	0.886	1.00
81_A	189_L	0.881	1.00
303_P	329_I	0.880	1.00
22_Q	58_A	0.880	1.00
302_N	347_E	0.877	1.00
80_A	238_C	0.876	1.00
298_I	323_R	0.875	1.00
347_E	391_S	0.872	1.00
355_M	386_I	0.870	1.00
18_A	349_I	0.863	1.00
10_V	246_K	0.859	1.00
32_L	357_K	0.858	1.00
34_G	362_P	0.857	1.00
89_W	187_I	0.856	1.00
10_V	259_A	0.854	1.00
298_I	404_C	0.852	1.00
210_G	223_R	0.849	1.00
23_G	87_E	0.849	1.00
175_I	263_W	0.848	1.00
172_I	176_Q	0.846	1.00
27_F	336_T	0.844	1.00
41_M	46_R	0.843	1.00
111_F	140_D	0.837	1.00
15_G	87_E	0.836	1.00
277_L	317_K	0.833	1.00
287_A	404_C	0.833	1.00
21_G	37_A	0.832	1.00
301_I	390_L	0.828	1.00
104_L	153_I	0.825	1.00
17_T	87_E	0.825	1.00
185_T	188_A	0.824	1.00
305_G	331_A	0.822	1.00
38_F	233_I	0.820	1.00
34_G	380_K	0.819	1.00
293_L	404_C	0.819	1.00
57_I	80_A	0.817	1.00
162_G	169_L	0.815	1.00
154_T	278_E	0.813	1.00
284_I	318_A	0.813	1.00
287_A	291_A	0.811	1.00
28_A	32_L	0.809	1.00
168_Q	344_G	0.804	1.00
89_W	242_V	0.802	1.00
28_A	353_L	0.798	1.00
266_K	282_H	0.798	1.00
36_H	364_R	0.796	1.00
14_V	91_E	0.794	1.00
67_S	70_M	0.793	1.00
351_V	354_Q	0.791	1.00
323_R	327_A	0.790	1.00
108_G	140_D	0.789	1.00
331_A	363_S	0.788	1.00
14_V	353_L	0.786	1.00
278_E	281_I	0.785	1.00
201_E	204_R	0.785	1.00
20_I	30_S	0.784	1.00
187_I	240_A	0.783	1.00
17_T	83_V	0.780	1.00
280_E	394_M	0.780	1.00
60_L	83_V	0.779	1.00
316_L	320_R	0.779	1.00
145_G	157_A	0.777	1.00
25_E	357_K	0.775	1.00
50_S	207_G	0.772	1.00
352_L	355_M	0.767	1.00
299_D	388_N	0.767	1.00
284_I	288_L	0.766	1.00
304_H	308_S	0.765	1.00
22_Q	30_S	0.764	1.00
105_V	183_V	0.763	1.00
285_Q	322_C	0.762	1.00
135_G	202_A	0.762	1.00
285_Q	321_A	0.760	1.00
246_K	256_P	0.759	1.00
245_R	250_L	0.758	1.00
171_V	345_I	0.755	1.00
378_N	381_S	0.755	1.00
185_T	248_T	0.752	1.00
282_H	285_Q	0.752	1.00
248_T	252_R	0.752	1.00
320_R	324_L	0.752	1.00
46_R	52_F	0.745	1.00
109_S	341_S	0.745	1.00
75_S	115_E	0.741	1.00
92_A	242_V	0.739	1.00
369_P	377_V	0.739	1.00
261_S	293_L	0.738	1.00
82_L	150_Q	0.737	1.00
302_N	350_S	0.737	1.00
10_V	256_P	0.737	1.00
51_R	204_R	0.736	1.00
100_S	184_D	0.736	1.00
37_A	55_A	0.735	1.00
339_G	342_A	0.735	1.00
265_I	401_T	0.734	1.00
278_E	282_H	0.734	1.00
168_Q	391_S	0.731	1.00
85_L	151_F	0.730	1.00
266_K	286_K	0.729	1.00
26_D	30_S	0.728	1.00
156_L	183_V	0.724	1.00
188_A	243_I	0.724	1.00
108_G	159_T	0.721	1.00
130_I	201_E	0.720	1.00
355_M	407_N	0.720	1.00
191_A	238_C	0.718	1.00
51_R	56_E	0.718	1.00
308_S	311_G	0.718	1.00
30_S	33_S	0.717	1.00
105_V	158_Y	0.715	1.00
56_E	59_S	0.714	1.00
85_L	88_A	0.714	1.00
320_R	374_F	0.713	1.00
100_S	154_T	0.711	1.00
284_I	319_L	0.708	1.00
258_A	405_I	0.704	1.00
182_E	290_R	0.703	1.00
24_K	353_L	0.702	1.00
104_L	147_C	0.702	1.00
291_A	404_C	0.698	1.00
50_S	53_I	0.698	1.00
46_R	49_D	0.698	1.00
89_W	153_I	0.693	1.00
17_T	84_T	0.692	1.00
109_S	112_Q	0.692	1.00
285_Q	325_S	0.688	1.00
277_L	281_I	0.688	1.00
78_S	142_D	0.688	1.00
208_A	232_F	0.683	1.00
19_S	339_G	0.683	1.00
95_D	98_D	0.682	1.00
153_I	187_I	0.682	1.00
310_I	314_I	0.681	1.00
260_L	403_V	0.680	1.00
360_L	386_I	0.679	1.00
13_G	88_A	0.678	1.00
288_L	404_C	0.678	1.00
171_V	241_L	0.676	1.00
328_Y	375_H	0.671	1.00
299_D	386_I	0.671	1.00
313_E	372_D	0.666	1.00
283_V	402_A	0.664	1.00
76_F	79_R	0.664	1.00
277_L	318_A	0.661	1.00
300_Y	389_A	0.660	1.00
358_S	383_S	0.660	1.00
352_L	356_K	0.656	1.00
112_Q	116_N	0.655	1.00
43_R	76_F	0.652	1.00
77_S	191_A	0.651	1.00
158_Y	162_G	0.649	1.00
142_D	396_F	0.648	1.00
41_M	200_C	0.648	1.00
168_Q	393_S	0.648	1.00
262_G	287_A	0.645	1.00
317_K	372_D	0.642	1.00
328_Y	377_V	0.642	1.00
171_V	260_L	0.639	1.00
81_A	85_L	0.638	1.00
97_A	102_I	0.637	1.00
332_T	350_S	0.636	1.00
301_I	327_A	0.636	1.00
210_G	219_E	0.635	1.00
141_S	163_A	0.634	1.00
222_C	232_F	0.632	1.00
277_L	314_I	0.632	1.00
27_F	346_V	0.631	1.00
99_S	152_G	0.630	1.00
223_R	367_D	0.629	1.00
384_Y	389_A	0.627	1.00
31_L	353_L	0.627	1.00
177_Q	186_C	0.627	1.00
250_L	256_P	0.626	1.00
8_E	179_L	0.625	1.00
266_K	279_G	0.624	1.00
139_M	142_D	0.622	1.00
87_E	91_E	0.622	1.00
41_M	56_E	0.621	1.00
229_R	370_I	0.621	1.00
20_I	39_D	0.619	1.00
316_L	373_S	0.618	1.00
203_L	208_A	0.617	1.00
11_V	405_I	0.617	1.00
203_L	396_F	0.616	1.00
78_S	143_L	0.615	1.00
42_K	46_R	0.614	1.00
232_F	340_L	0.614	1.00
39_D	56_E	0.611	1.00
9_V	178_V	0.609	1.00
274_D	310_I	0.608	1.00
363_S	377_V	0.607	1.00
240_A	345_I	0.605	1.00
360_L	382_I	0.604	1.00
265_I	399_M	0.604	1.00
192_L	340_L	0.603	1.00
185_T	244_E	0.603	1.00
386_I	407_N	0.602	1.00
188_A	345_I	0.600	1.00
24_K	91_E	0.598	1.00
51_R	55_A	0.596	1.00
101_R	282_H	0.596	1.00
188_A	241_L	0.594	1.00
180_S	290_R	0.593	1.00
154_T	279_G	0.592	1.00
40_V	46_R	0.590	1.00
103_G	177_Q	0.590	1.00
53_I	221_A	0.589	1.00
24_K	27_F	0.589	1.00
247_E	251_R	0.588	1.00
336_T	339_G	0.587	1.00
278_E	321_A	0.586	1.00
281_I	318_A	0.586	1.00
9_V	245_R	0.584	1.00
330_N	361_H	0.584	1.00
354_Q	384_Y	0.583	1.00
89_W	97_A	0.583	1.00
41_M	54_G	0.583	1.00
386_I	406_Q	0.582	1.00
83_V	87_E	0.582	1.00
316_L	374_F	0.580	1.00
163_A	396_F	0.580	1.00
98_D	102_I	0.580	1.00
302_N	351_V	0.579	1.00
355_M	408_I	0.578	1.00
27_F	31_L	0.577	1.00
208_A	396_F	0.577	1.00
288_L	402_A	0.576	1.00
20_I	27_F	0.575	1.00
173_H	177_Q	0.575	1.00
94_L	185_T	0.573	1.00
328_Y	384_Y	0.573	1.00
223_R	365_N	0.573	1.00
106_V	144_C	0.571	1.00
88_A	92_A	0.569	1.00
244_E	248_T	0.569	1.00
303_P	331_A	0.567	1.00
12_T	185_T	0.565	1.00
60_L	65_R	0.564	1.00
222_C	307_G	0.562	1.00
355_M	389_A	0.562	1.00
77_S	143_L	0.561	1.00
105_V	173_H	0.561	1.00
7_P	179_L	0.560	1.00
293_L	298_I	0.559	1.00
24_K	349_I	0.555	1.00
54_G	200_C	0.554	1.00
74_A	146_I	0.553	1.00
12_T	254_L	0.552	1.00
41_M	44_S	0.550	1.00
280_E	318_A	0.549	1.00
354_Q	389_A	0.548	1.00
178_V	248_T	0.548	1.00
260_L	405_I	0.546	1.00
66_L	83_V	0.546	1.00
8_E	247_E	0.546	1.00
87_E	90_E	0.545	1.00
326_H	373_S	0.544	1.00
66_L	71_L	0.542	1.00
226_D	365_N	0.539	1.00
53_I	57_I	0.538	1.00
108_G	111_F	0.537	1.00
166_S	170_A	0.537	1.00
228_N	366_L	0.537	1.00
385_R	407_N	0.536	1.00
64_D	90_E	0.535	1.00
239_G	342_A	0.534	1.00
311_G	314_I	0.534	1.00
13_G	257_Y	0.533	1.00
126_R	129_F	0.532	1.00
109_S	140_D	0.532	1.00
80_A	193_M	0.530	1.00
303_P	319_L	0.529	1.00
296_E	326_H	0.528	1.00
204_R	207_G	0.528	1.00
219_E	233_I	0.528	1.00
99_S	154_T	0.528	1.00
169_L	173_H	0.525	1.00
348_I	352_L	0.525	1.00
94_L	242_V	0.525	1.00
273_P	310_I	0.524	1.00
181_G	245_R	0.523	1.00
288_L	322_C	0.522	1.00
276_S	279_G	0.521	1.00
177_Q	180_S	0.521	1.00
132_P	202_A	0.520	1.00
13_G	255_K	0.520	1.00
330_N	360_L	0.520	1.00
78_S	146_I	0.518	1.00
172_I	265_I	0.518	1.00
55_A	59_S	0.517	1.00
222_C	233_I	0.516	1.00
335_I	362_P	0.515	0.99
112_Q	195_L	0.514	0.99
345_I	349_I	0.513	0.99
299_D	355_M	0.512	0.99
351_V	405_I	0.511	0.99
347_E	351_V	0.510	0.99
273_P	277_L	0.510	0.99
174_A	243_I	0.509	0.99
271_R	276_S	0.509	0.99
97_A	185_T	0.509	0.99
386_I	389_A	0.508	0.99
347_E	393_S	0.508	0.99
43_R	47_Q	0.507	0.99
65_R	83_V	0.506	0.99
115_E	198_M	0.506	0.99
277_L	321_A	0.506	0.99
21_G	26_D	0.506	0.99
318_A	322_C	0.504	0.99
144_C	157_A	0.503	0.99
224_P	232_F	0.503	0.99
178_V	181_G	0.503	0.99
12_T	94_L	0.503	0.99
391_S	403_V	0.502	0.99
94_L	244_E	0.502	0.99
17_T	80_A	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2vz8A	2	0.9446	100	0.073	Contact Map
4na1A	2	0.947	100	0.135	Contact Map
4tktA	1	0.9446	100	0.155	Contact Map
4oqjA	2	0.9639	100	0.157	Contact Map
2hg4A	2	0.9614	100	0.159	Contact Map
4qyrA	2	0.947	100	0.159	Contact Map
4kc5A	2	0.9639	100	0.159	Contact Map
4zdnA	2	0.9446	100	0.159	Contact Map
4mz0A	2	0.9566	100	0.16	Contact Map
4opeA	2	0.9542	100	0.162	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0114 seconds.