CWLO - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

CWLO - Peptidoglycan DL-endopeptidase CwlO

UniProt:	P40767	Sequences: MRKSLITLGLASVIGTSSFLIPFTSKTASAETLDEKKQKIESKQSEVASSIEAKEKELTELQENQSKIEKELKDINDKALDTSNKIEDKKEENDKTKEEIKKLKKEIKETEARIEKRNEILKKRVRSLQESGGSQGYIDVLLGSTSFGDFISRATAVSSIVDADKDLIKQQEQDKAKLEDSEADLNDKLKEVQAALAKLETMQKDLDKQLNEKDKLFDEAKASQKKTAKAISELKSEASELANQKANTEAEQARIKKEQEAAAALIKKQEEAQKASDETQTDDSQTATTESSKASSSDDSSDNSSDNSSNGSSNSSSNGSSSKKSSGSNSNSGGTVISNSGGIEGAISVGSSIVGQSPYKFGGGRTQSDINNRIFDCSSFVRWAYASAGVNLGPVGGTTTDTLVGRGQAVSASEMKRGDLVFFDTYKTNGHVGIYLGNGTFLNDNTSHGVSVDSMSNPYWKAAFKGVVRRVVQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	473 (393)
Sequences:	486 (449)
Seq/√Len:	22.6

BACSU - CWLO YDDH

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
363_G	374_I	5.327	1.00
351_S	442_L	4.917	1.00
267_K	271_E	4.694	1.00
268_K	272_A	3.900	1.00
351_S	452_V	3.876	1.00
394_P	399_T	3.845	1.00
344_E	417_R	3.594	1.00
448_H	451_S	3.567	1.00
364_G	394_P	3.554	1.00
381_V	420_L	3.487	1.00
266_I	270_E	3.294	1.00
365_R	374_I	3.254	1.00
357_S	374_I	3.241	1.00
270_E	274_K	3.209	1.00
381_V	403_L	3.152	1.00
423_F	433_G	3.021	1.00
353_I	357_S	2.691	0.99
354_V	442_L	2.675	0.99
271_E	275_A	2.642	0.99
436_L	452_V	2.609	0.99
265_L	269_Q	2.603	0.99
241_L	245_K	2.566	0.99
375_F	383_W	2.516	0.98
263_A	267_K	2.496	0.98
357_S	365_R	2.449	0.98
411_S	414_E	2.411	0.98
441_F	455_M	2.381	0.98
415_M	421_V	2.326	0.97
354_V	449_G	2.303	0.97
238_A	242_A	2.281	0.97
350_G	442_L	2.264	0.97
124_R	164_D	2.252	0.97
381_V	434_I	2.220	0.96
357_S	363_G	2.158	0.96
382_R	394_P	2.149	0.95
269_Q	273_Q	2.143	0.95
314_N	320_S	2.090	0.95
102_K	106_E	2.078	0.95
442_L	452_V	2.013	0.94
417_R	442_L	1.998	0.93
255_I	258_E	1.967	0.93
263_A	266_I	1.960	0.93
424_D	428_T	1.940	0.92
283_D	287_A	1.929	0.92
393_G	402_T	1.908	0.92
328_S	332_S	1.886	0.91
433_G	436_L	1.884	0.91
95_K	99_E	1.866	0.91
250_A	253_A	1.860	0.90
319_G	323_K	1.858	0.90
349_V	353_I	1.836	0.90
421_V	455_M	1.799	0.89
417_R	436_L	1.799	0.89
251_E	255_I	1.791	0.89
45_S	53_A	1.735	0.87
392_L	403_L	1.731	0.87
306_D	316_S	1.716	0.86
315_S	321_S	1.715	0.86
347_I	436_L	1.705	0.86
381_V	392_L	1.696	0.86
433_G	441_F	1.646	0.84
207_D	211_N	1.644	0.84
358_P	374_I	1.634	0.84
364_G	399_T	1.632	0.83
238_A	241_L	1.615	0.83
240_E	244_Q	1.614	0.83
329_N	333_G	1.612	0.83
325_S	329_N	1.611	0.83
360_K	373_R	1.610	0.83
304_S	310_N	1.609	0.83
310_N	314_N	1.594	0.82
248_T	252_Q	1.588	0.82
251_E	254_R	1.581	0.81
295_S	301_S	1.573	0.81
182_E	186_N	1.561	0.81
252_Q	255_I	1.559	0.80
393_G	400_T	1.522	0.79
264_A	271_E	1.488	0.77
245_K	248_T	1.487	0.77
343_I	347_I	1.483	0.77
380_F	384_A	1.482	0.77
344_E	348_S	1.466	0.76
318_N	324_K	1.458	0.76
440_T	452_V	1.457	0.76
313_S	319_G	1.452	0.75
423_F	464_F	1.451	0.75
242_A	245_K	1.447	0.75
300_S	305_S	1.416	0.74
404_V	422_F	1.416	0.74
280_Q	284_S	1.408	0.73
254_R	257_K	1.406	0.73
403_L	420_L	1.403	0.73
325_S	330_S	1.399	0.73
309_S	317_S	1.382	0.72
176_A	180_D	1.372	0.71
382_R	403_L	1.368	0.71
349_V	352_S	1.365	0.71
312_S	320_S	1.359	0.70
264_A	268_K	1.349	0.70
424_D	430_G	1.343	0.69
352_S	380_F	1.328	0.69
308_S	313_S	1.326	0.68
253_A	257_K	1.326	0.68
317_S	322_S	1.325	0.68
318_N	322_S	1.323	0.68
305_S	310_N	1.319	0.68
179_E	183_A	1.318	0.68
353_I	363_G	1.317	0.68
306_D	309_S	1.315	0.68
308_S	314_N	1.312	0.68
364_G	382_R	1.300	0.67
324_K	328_S	1.292	0.66
300_S	306_D	1.291	0.66
344_E	436_L	1.289	0.66
255_I	259_Q	1.279	0.66
443_N	451_S	1.279	0.66
433_G	442_L	1.267	0.65
364_G	383_W	1.262	0.65
433_G	443_N	1.257	0.64
314_N	322_S	1.257	0.64
296_S	300_S	1.255	0.64
265_L	268_K	1.253	0.64
357_S	373_R	1.235	0.63
245_K	249_E	1.232	0.63
343_I	417_R	1.228	0.62
320_S	324_K	1.228	0.62
171_Q	174_D	1.227	0.62
318_N	323_K	1.225	0.62
348_S	351_S	1.223	0.62
315_S	327_G	1.222	0.62
420_L	434_I	1.211	0.61
252_Q	256_K	1.210	0.61
314_N	318_N	1.210	0.61
411_S	415_M	1.201	0.61
100_I	103_L	1.199	0.60
54_K	58_L	1.195	0.60
309_S	315_S	1.189	0.60
259_Q	263_A	1.186	0.60
353_I	365_R	1.185	0.60
421_V	433_G	1.182	0.59
298_D	303_N	1.179	0.59
146_S	149_D	1.177	0.59
349_V	375_F	1.161	0.58
415_M	423_F	1.156	0.58
200_E	204_K	1.156	0.58
321_S	324_K	1.154	0.57
349_V	387_S	1.145	0.57
323_K	326_S	1.138	0.56
154_A	158_S	1.122	0.55
394_P	401_D	1.114	0.55
326_S	332_S	1.114	0.55
450_V	455_M	1.113	0.55
303_N	311_G	1.113	0.55
305_S	309_S	1.105	0.54
315_S	319_G	1.103	0.54
117_R	174_D	1.101	0.54
253_A	256_K	1.093	0.53
303_N	317_S	1.090	0.53
301_S	307_N	1.082	0.53
267_K	274_K	1.078	0.52
310_N	316_S	1.070	0.52
315_S	318_N	1.066	0.51
211_N	254_R	1.065	0.51
327_G	330_S	1.059	0.51
353_I	380_F	1.059	0.51
352_S	357_S	1.052	0.50
311_G	315_S	1.049	0.50
98_E	101_K	1.046	0.50
279_T	284_S	1.046	0.50
310_N	322_S	1.044	0.50
421_V	464_F	1.035	0.49
443_N	453_D	1.030	0.49
309_S	319_G	1.030	0.49
447_S	450_V	1.028	0.49
297_S	303_N	1.026	0.49
359_Y	376_D	1.023	0.48
381_V	385_Y	1.023	0.48
392_L	432_V	1.021	0.48
349_V	383_W	1.018	0.48
361_F	374_I	1.016	0.48
238_A	245_K	1.014	0.48
348_S	442_L	1.014	0.48
365_R	373_R	1.013	0.48
250_A	254_R	1.012	0.48
137_Y	157_V	1.009	0.48
68_I	216_L	1.007	0.47
241_L	244_Q	1.006	0.47
399_T	402_T	1.004	0.47
244_Q	247_N	1.001	0.47
300_S	318_N	0.999	0.47
129_Q	132_G	0.996	0.47
316_S	321_S	0.996	0.47
380_F	450_V	0.996	0.47
213_K	217_F	0.993	0.46
299_D	308_S	0.990	0.46
114_I	171_Q	0.981	0.46
353_I	384_A	0.972	0.45
443_N	456_S	0.961	0.44
235_K	246_A	0.960	0.44
380_F	394_P	0.959	0.44
124_R	147_F	0.957	0.44
172_E	175_K	0.953	0.44
300_S	308_S	0.950	0.43
282_D	286_T	0.948	0.43
177_K	181_S	0.948	0.43
143_G	153_R	0.943	0.43
212_E	216_L	0.941	0.43
307_N	313_S	0.938	0.43
279_T	282_D	0.931	0.42
83_S	87_E	0.930	0.42
52_E	230_A	0.925	0.42
382_R	392_L	0.924	0.42
259_Q	271_E	0.924	0.42
410_V	414_E	0.921	0.42
418_G	431_H	0.916	0.41
306_D	313_S	0.915	0.41
117_R	129_Q	0.913	0.41
264_A	267_K	0.907	0.41
403_L	424_D	0.900	0.40
412_A	421_V	0.900	0.40
309_S	313_S	0.899	0.40
238_A	248_T	0.899	0.40
297_S	307_N	0.898	0.40
299_D	302_D	0.894	0.40
302_D	313_S	0.894	0.40
349_V	384_A	0.893	0.40
237_E	248_T	0.890	0.39
111_E	115_E	0.889	0.39
242_A	246_A	0.880	0.39
384_A	388_A	0.879	0.39
410_V	416_K	0.878	0.39
48_A	51_I	0.878	0.39
325_S	328_S	0.875	0.38
410_V	435_Y	0.873	0.38
279_T	283_D	0.873	0.38
440_T	454_S	0.870	0.38
366_T	433_G	0.869	0.38
346_A	388_A	0.868	0.38
422_F	450_V	0.866	0.38
244_Q	252_Q	0.861	0.38
249_E	252_Q	0.861	0.38
400_T	404_V	0.857	0.37
75_I	420_L	0.857	0.37
251_E	258_E	0.853	0.37
172_E	415_M	0.852	0.37
312_S	316_S	0.848	0.37
237_E	245_K	0.847	0.37
306_D	320_S	0.844	0.36
302_D	308_S	0.844	0.36
307_N	321_S	0.843	0.36
347_I	442_L	0.843	0.36
315_S	322_S	0.843	0.36
304_S	322_S	0.842	0.36
282_D	287_A	0.840	0.36
415_M	436_L	0.831	0.36
93_N	192_V	0.829	0.36
305_S	311_G	0.829	0.36
307_N	315_S	0.824	0.35
317_S	320_S	0.816	0.35
224_Q	227_T	0.813	0.35
339_N	342_G	0.808	0.34
312_S	321_S	0.807	0.34
423_F	426_Y	0.805	0.34
375_F	422_F	0.805	0.34
327_G	331_N	0.801	0.34
231_I	235_K	0.800	0.34
366_T	375_F	0.798	0.34
304_S	314_N	0.798	0.34
400_T	432_V	0.797	0.34
96_T	188_K	0.795	0.33
305_S	313_S	0.794	0.33
121_L	153_R	0.794	0.33
104_K	167_L	0.792	0.33
308_S	311_G	0.791	0.33
304_S	312_S	0.789	0.33
403_L	433_G	0.789	0.33
105_K	410_V	0.787	0.33
445_N	448_H	0.787	0.33
305_S	308_S	0.785	0.33
297_S	313_S	0.785	0.33
317_S	326_S	0.784	0.33
244_Q	248_T	0.783	0.33
310_N	318_N	0.782	0.33
310_N	328_S	0.781	0.33
235_K	238_A	0.780	0.32
353_I	450_V	0.778	0.32
423_F	427_K	0.777	0.32
393_G	432_V	0.776	0.32
354_V	447_S	0.774	0.32
316_S	319_G	0.773	0.32
308_S	312_S	0.767	0.32
312_S	315_S	0.766	0.32
296_S	303_N	0.765	0.32
316_S	320_S	0.762	0.31
190_K	334_G	0.762	0.31
415_M	455_M	0.761	0.31
426_Y	430_G	0.761	0.31
298_D	314_N	0.759	0.31
286_T	295_S	0.758	0.31
317_S	327_G	0.758	0.31
385_Y	388_A	0.757	0.31
96_T	103_L	0.756	0.31
224_Q	228_A	0.753	0.31
144_S	147_F	0.753	0.31
221_K	231_I	0.753	0.31
318_N	321_S	0.752	0.31
302_D	310_N	0.752	0.31
312_S	318_N	0.750	0.31
301_S	305_S	0.749	0.31
400_T	450_V	0.749	0.31
270_E	273_Q	0.748	0.31
326_S	330_S	0.747	0.31
364_G	375_F	0.747	0.31
268_K	271_E	0.747	0.31
316_S	322_S	0.746	0.30
252_Q	258_E	0.746	0.30
295_S	298_D	0.745	0.30
402_T	405_G	0.744	0.30
364_G	402_T	0.742	0.30
100_I	185_L	0.740	0.30
310_N	327_G	0.740	0.30
47_V	51_I	0.736	0.30
208_K	212_E	0.736	0.30
375_F	450_V	0.736	0.30
107_I	423_F	0.736	0.30
162_D	347_I	0.734	0.30
446_T	449_G	0.733	0.30
52_E	63_E	0.732	0.30
296_S	299_D	0.732	0.30
385_Y	390_V	0.731	0.30
319_G	322_S	0.730	0.30
230_A	233_E	0.729	0.29
309_S	320_S	0.728	0.29
357_S	442_L	0.728	0.29
103_L	189_L	0.727	0.29
280_Q	283_D	0.726	0.29
75_I	381_V	0.724	0.29
311_G	326_S	0.724	0.29
226_K	230_A	0.723	0.29
110_T	129_Q	0.721	0.29
343_I	441_F	0.718	0.29
448_H	453_D	0.717	0.29
220_A	224_Q	0.716	0.29
304_S	311_G	0.716	0.29
305_S	314_N	0.715	0.29
144_S	233_E	0.713	0.29
310_N	324_K	0.712	0.29
445_N	449_G	0.711	0.28
355_G	379_S	0.708	0.28
298_D	302_D	0.704	0.28
302_D	305_S	0.703	0.28
329_N	332_S	0.703	0.28
118_N	121_L	0.702	0.28
439_G	455_M	0.701	0.28
346_A	360_K	0.700	0.28
105_K	108_K	0.699	0.28
297_S	302_D	0.696	0.28
357_S	375_F	0.695	0.28
298_D	308_S	0.695	0.28
432_V	435_Y	0.694	0.28
297_S	301_S	0.694	0.28
241_L	248_T	0.693	0.27
332_S	336_V	0.690	0.27
145_T	465_K	0.689	0.27
420_L	432_V	0.686	0.27
275_A	279_T	0.686	0.27
400_T	429_N	0.684	0.27
63_E	121_L	0.682	0.27
436_L	440_T	0.681	0.27
231_I	238_A	0.680	0.27
100_I	107_I	0.676	0.27
259_Q	269_Q	0.676	0.27
108_K	194_A	0.675	0.26
137_Y	141_L	0.673	0.26
240_E	243_N	0.673	0.26
178_L	185_L	0.673	0.26
75_I	110_T	0.673	0.26
243_N	247_N	0.670	0.26
310_N	320_S	0.670	0.26
394_P	402_T	0.670	0.26
415_M	432_V	0.669	0.26
227_T	238_A	0.668	0.26
359_Y	378_S	0.668	0.26
263_A	272_A	0.666	0.26
107_I	121_L	0.664	0.26
280_Q	301_S	0.664	0.26
56_K	162_D	0.662	0.26
67_K	71_E	0.661	0.26
263_A	270_E	0.661	0.26
301_S	311_G	0.660	0.26
424_D	441_F	0.659	0.26
359_Y	377_C	0.659	0.26
313_S	318_N	0.659	0.26
142_L	390_V	0.658	0.26
318_N	327_G	0.658	0.26
117_R	121_L	0.657	0.26
229_K	301_S	0.657	0.26
304_S	316_S	0.655	0.25
203_Q	207_D	0.654	0.25
350_G	428_T	0.654	0.25
44_Q	241_L	0.654	0.25
315_S	320_S	0.654	0.25
286_T	294_A	0.652	0.25
435_Y	440_T	0.651	0.25
271_E	274_K	0.649	0.25
421_V	427_K	0.648	0.25
436_L	442_L	0.647	0.25
121_L	171_Q	0.644	0.25
300_S	304_S	0.644	0.25
383_W	387_S	0.643	0.25
323_K	327_G	0.643	0.25
403_L	447_S	0.639	0.25
385_Y	401_D	0.639	0.25
302_D	307_N	0.638	0.25
313_S	329_N	0.637	0.24
431_H	437_G	0.637	0.24
418_G	437_G	0.637	0.24
423_F	441_F	0.636	0.24
313_S	317_S	0.635	0.24
313_S	316_S	0.633	0.24
111_E	114_I	0.633	0.24
249_E	253_A	0.632	0.24
328_S	333_G	0.632	0.24
327_G	333_G	0.632	0.24
324_K	327_G	0.632	0.24
125_V	132_G	0.631	0.24
417_R	452_V	0.630	0.24
404_V	436_L	0.630	0.24
303_N	309_S	0.629	0.24
410_V	436_L	0.626	0.24
258_E	271_E	0.626	0.24
299_D	309_S	0.626	0.24
361_F	399_T	0.625	0.24
296_S	306_D	0.624	0.24
62_Q	416_K	0.624	0.24
279_T	286_T	0.624	0.24
423_F	430_G	0.623	0.24
316_S	324_K	0.622	0.24
346_A	392_L	0.622	0.24
331_N	335_T	0.621	0.24
353_I	374_I	0.620	0.24
423_F	455_M	0.620	0.24
237_E	242_A	0.618	0.24
97_K	160_I	0.618	0.24
363_G	366_T	0.618	0.24
366_T	450_V	0.616	0.23
329_N	334_G	0.615	0.23
227_T	231_I	0.614	0.23
303_N	308_S	0.614	0.23
303_N	313_S	0.605	0.23
357_S	366_T	0.605	0.23
366_T	383_W	0.604	0.23
311_G	321_S	0.602	0.23
377_C	431_H	0.602	0.23
377_C	418_G	0.602	0.23
47_V	50_S	0.601	0.23
343_I	388_A	0.601	0.23
299_D	311_G	0.600	0.23
236_S	241_L	0.599	0.23
59_T	65_Q	0.598	0.23
153_R	166_D	0.597	0.23
54_K	57_E	0.597	0.23
384_A	387_S	0.594	0.22
104_K	108_K	0.594	0.22
303_N	314_N	0.593	0.22
330_S	336_V	0.593	0.22
50_S	53_A	0.590	0.22
421_V	443_N	0.590	0.22
374_I	444_D	0.590	0.22
427_K	430_G	0.590	0.22
168_I	181_S	0.589	0.22
313_S	323_K	0.589	0.22
352_S	450_V	0.589	0.22
118_N	171_Q	0.588	0.22
220_A	227_T	0.588	0.22
167_L	414_E	0.588	0.22
346_A	406_R	0.588	0.22
441_F	447_S	0.587	0.22
53_A	190_K	0.587	0.22
309_S	318_N	0.587	0.22
113_R	174_D	0.586	0.22
304_S	321_S	0.584	0.22
268_K	273_Q	0.584	0.22
309_S	323_K	0.583	0.22
330_S	334_G	0.583	0.22
236_S	239_S	0.583	0.22
419_D	431_H	0.582	0.22
295_S	300_S	0.580	0.22
362_G	376_D	0.579	0.22
214_D	221_K	0.579	0.22
304_S	318_N	0.578	0.22
259_Q	267_K	0.575	0.21
65_Q	144_S	0.575	0.21
320_S	326_S	0.575	0.21
156_A	185_L	0.574	0.21
129_Q	171_Q	0.573	0.21
53_A	58_L	0.572	0.21
385_Y	393_G	0.572	0.21
235_K	239_S	0.572	0.21
163_A	228_A	0.571	0.21
56_K	101_K	0.571	0.21
360_K	364_G	0.570	0.21
62_Q	141_L	0.570	0.21
56_K	66_S	0.569	0.21
362_G	419_D	0.568	0.21
303_N	315_S	0.568	0.21
430_G	433_G	0.567	0.21
71_E	142_L	0.567	0.21
300_S	312_S	0.567	0.21
392_L	420_L	0.566	0.21
311_G	323_K	0.566	0.21
382_R	386_A	0.566	0.21
197_A	200_E	0.565	0.21
376_D	379_S	0.561	0.21
295_S	304_S	0.561	0.21
61_L	64_N	0.558	0.21
306_D	322_S	0.558	0.21
330_S	333_G	0.558	0.21
331_N	438_N	0.557	0.21
319_G	336_V	0.557	0.21
306_D	311_G	0.556	0.21
394_P	450_V	0.554	0.20
346_A	433_G	0.553	0.20
307_N	311_G	0.553	0.20
107_I	110_T	0.552	0.20
91_E	145_T	0.551	0.20
61_L	65_Q	0.549	0.20
57_E	110_T	0.549	0.20
302_D	306_D	0.547	0.20
357_S	450_V	0.547	0.20
375_F	455_M	0.546	0.20
297_S	300_S	0.544	0.20
385_Y	420_L	0.542	0.20
110_T	117_R	0.542	0.20
297_S	318_N	0.542	0.20
286_T	301_S	0.540	0.20
400_T	407_G	0.539	0.20
124_R	185_L	0.536	0.20
413_S	434_I	0.536	0.20
106_E	181_S	0.535	0.20
346_A	414_E	0.532	0.20
59_T	63_E	0.532	0.20
298_D	304_S	0.531	0.19
422_F	447_S	0.531	0.19
297_S	305_S	0.530	0.19
294_A	301_S	0.529	0.19
107_I	178_L	0.529	0.19
287_A	309_S	0.529	0.19
319_G	325_S	0.528	0.19
349_V	364_G	0.528	0.19
346_A	385_Y	0.528	0.19
44_Q	47_V	0.528	0.19
376_D	431_H	0.526	0.19
376_D	418_G	0.526	0.19
320_S	323_K	0.526	0.19
354_V	432_V	0.524	0.19
65_Q	89_K	0.524	0.19
359_Y	419_D	0.523	0.19
141_L	154_A	0.522	0.19
343_I	424_D	0.521	0.19
281_T	326_S	0.521	0.19
117_R	171_Q	0.520	0.19
204_K	391_N	0.520	0.19
82_T	89_K	0.519	0.19
399_T	433_G	0.519	0.19
143_G	147_F	0.519	0.19
322_S	325_S	0.518	0.19
304_S	308_S	0.517	0.19
198_K	208_K	0.515	0.19
376_D	419_D	0.515	0.19
82_T	206_L	0.514	0.19
112_A	239_S	0.513	0.19
309_S	312_S	0.511	0.19
308_S	318_N	0.510	0.19
68_I	107_I	0.510	0.19
400_T	428_T	0.510	0.19
303_N	310_N	0.509	0.19
309_S	314_N	0.507	0.18
164_D	360_K	0.507	0.18
304_S	324_K	0.507	0.18
412_A	433_G	0.507	0.18
338_S	342_G	0.507	0.18
373_R	442_L	0.504	0.18
303_N	307_N	0.504	0.18
326_S	334_G	0.503	0.18
403_L	432_V	0.501	0.18
385_Y	392_L	0.501	0.18
415_M	464_F	0.501	0.18
267_K	272_A	0.500	0.18
296_S	318_N	0.500	0.18

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4q4gX	1	0.3636	100	0.416	Contact Map
4cgkA	3	0.723	100	0.668	Contact Map
3pbiA	1	0.3805	100	0.677	Contact Map
2k1gA	1	0.2622	100	0.678	Contact Map
4lj1A	1	0.2579	100	0.681	Contact Map
4xcmA	2	0.4038	100	0.702	Contact Map
2hbwA	1	0.3848	100	0.708	Contact Map
4hpeA	1	0.5856	100	0.708	Contact Map
3npfA	2	0.4017	100	0.711	Contact Map
3h41A	1	0.4207	100	0.712	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0116 seconds.