GREMLIN Database
SWRB - Swarming motility protein SwrB
UniProt: P40405 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 167 (155)
Sequences: 120 (113)
Seq/√Len: 9.1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
9_S13_H4.9261.00
52_L151_T4.1720.99
45_E57_E3.1480.93
62_L133_Y2.7460.86
44_T48_L2.5850.83
125_F153_I2.4340.78
51_F158_K2.2080.71
58_E150_K2.0930.67
18_Y22_I2.0160.64
6_W9_S2.0060.63
13_H31_K1.9640.61
13_H28_A1.9590.61
44_T51_F1.9550.61
13_H48_L1.9340.60
34_E151_T1.8680.57
16_L20_V1.8490.57
53_L63_I1.8260.56
13_H27_L1.8250.56
3_T7_L1.7840.54
20_V144_Q1.7840.54
37_Q153_I1.7790.54
5_L29_A1.7600.53
1_M20_V1.7290.51
5_L9_S1.6840.49
41_L44_T1.6710.49
43_E57_E1.6210.47
26_R74_D1.6210.47
43_E139_A1.6140.46
27_L31_K1.6030.46
140_S150_K1.5390.43
19_A144_Q1.4700.40
129_V156_F1.4530.40
22_I25_T1.4240.38
148_S153_I1.4150.38
61_K65_N1.4070.38
7_L21_I1.4030.37
24_Y156_F1.4020.37
148_S151_T1.4000.37
8_L51_F1.3810.37
64_E68_S1.3750.36
25_T151_T1.3670.36
56_K159_F1.3530.35
17_L53_L1.3410.35
47_T140_S1.2970.33
20_V23_L1.2950.33
45_E159_F1.2920.33
132_L142_I1.2860.33
52_L55_L1.2690.32
74_D135_Q1.2640.32
12_L20_V1.2450.31
10_F147_K1.2440.31
67_A70_A1.2420.31
37_Q44_T1.2300.31
21_I24_Y1.2090.30
37_Q160_R1.2030.30
28_A65_N1.1990.30
44_T49_A1.1840.29
12_L39_Q1.1730.29
41_L48_L1.1730.29
13_H26_R1.1690.28
86_E138_S1.1680.28
51_F54_E1.1540.28
62_L156_F1.1410.27
8_L39_Q1.1180.27
16_L144_Q1.1120.26
110_E116_E1.1040.26
49_A52_L1.0990.26
148_S156_F1.0890.26
107_L110_E1.0860.26
53_L147_K1.0860.26
125_F128_Q1.0790.25
84_T156_F1.0730.25
29_A44_T1.0720.25
64_E86_E1.0340.24
28_A61_K1.0200.23
41_L62_L1.0160.23
12_L50_A1.0160.23
1_M150_K1.0120.23
10_F44_T1.0060.23
60_E63_I1.0060.23
13_H132_L1.0040.23
16_L141_Q0.9940.23
15_V86_E0.9720.22
140_S161_S0.9710.22
2_S134_E0.9650.22
7_L14_G0.9600.22
18_Y55_L0.9590.22
33_T74_D0.9580.22
7_L50_A0.9480.21
18_Y21_I0.9390.21
46_N56_K0.9370.21
135_Q153_I0.9320.21
17_L159_F0.9250.21
4_L133_Y0.9180.20
5_L54_E0.9150.20
63_I83_Q0.9070.20
6_W147_K0.8970.20
2_S88_Y0.8830.19
10_F139_A0.8820.19
70_A122_V0.8820.19
22_I60_E0.8810.19
72_Q81_G0.8800.19
145_K156_F0.8780.19
151_T158_K0.8770.19
12_L160_R0.8670.19
9_S130_I0.8650.19
36_Q45_E0.8580.19
136_G152_E0.8520.19
143_A152_E0.8520.19
136_G143_A0.8520.19
143_A149_G0.8520.19
149_G152_E0.8520.19
136_G149_G0.8520.19
44_T144_Q0.8470.18
105_E109_T0.8340.18
44_T161_S0.8330.18
90_E153_I0.8320.18
154_E158_K0.8250.18
9_S124_S0.8240.18
17_L113_R0.8230.18
52_L58_E0.8130.18
84_T88_Y0.8040.17
34_E37_Q0.8000.17
29_A157_L0.8000.17
75_E145_K0.7940.17
112_D127_D0.7870.17
53_L132_L0.7830.17
34_E49_A0.7820.17
138_S141_Q0.7770.17
142_I157_L0.7760.17
14_G45_E0.7750.17
13_H16_L0.7710.17
137_Y145_K0.7690.17
82_L94_V0.7680.16
25_T135_Q0.7670.16
40_I61_K0.7650.16
25_T34_E0.7530.16
79_K128_Q0.7450.16
150_K154_E0.7430.16
14_G148_S0.7410.16
10_F17_L0.7390.16
45_E60_E0.7370.16
127_D153_I0.7340.16
50_A129_V0.7300.16
85_S140_S0.7250.15
19_A55_L0.7180.15
59_N146_M0.7180.15
78_Q132_L0.7150.15
41_L51_F0.7150.15
7_L51_F0.7140.15
11_M123_Q0.7110.15
79_K94_V0.7040.15
25_T72_Q0.7040.15
155_L159_F0.7030.15
52_L144_Q0.7030.15
66_K76_E0.7020.15
55_L63_I0.7000.15
66_K113_R0.6990.15
68_S117_L0.6980.15
103_H107_L0.6960.15
78_Q157_L0.6950.15
4_L123_Q0.6910.15
54_E62_L0.6900.15
61_K66_K0.6750.14
13_H124_S0.6700.14
7_L81_G0.6700.14
80_S85_S0.6670.14
13_H41_L0.6600.14
32_E56_K0.6600.14
75_E133_Y0.6590.14
42_E46_N0.6550.14
4_L148_S0.6450.14
142_I155_L0.6450.14
27_L57_E0.6430.14
66_K148_S0.6430.14
10_F135_Q0.6420.14
34_E52_L0.6400.14
23_L60_E0.6380.14
79_K138_S0.6340.14
19_A129_V0.6270.13
55_L137_Y0.6210.13
144_Q161_S0.6140.13
46_N54_E0.6100.13
25_T148_S0.6100.13
29_A37_Q0.6100.13
21_I60_E0.6070.13
66_K135_Q0.5990.13
55_L70_A0.5980.13
4_L19_A0.5960.13
46_N126_E0.5950.13
10_F144_Q0.5910.13
4_L26_R0.5900.13
21_I68_S0.5780.12
79_K83_Q0.5740.12
48_L54_E0.5740.12
56_K155_L0.5740.12
47_T134_E0.5720.12
107_L118_V0.5710.12
15_V67_A0.5680.12
119_N133_Y0.5680.12
56_K157_L0.5670.12
49_A151_T0.5650.12
38_K51_F0.5630.12
59_N143_A0.5580.12
59_N152_E0.5580.12
59_N149_G0.5580.12
59_N136_G0.5580.12
45_E62_L0.5570.12
62_L69_S0.5570.12
48_L62_L0.5490.12
71_S161_S0.5480.12
66_K70_A0.5450.12
132_L157_L0.5440.12
13_H45_E0.5430.12
78_Q91_R0.5380.12
103_H139_A0.5350.12
45_E49_A0.5350.12
13_H133_Y0.5340.12
1_M4_L0.5320.12
62_L148_S0.5300.12
7_L16_L0.5270.11
48_L52_L0.5220.11
1_M151_T0.5220.11
118_V138_S0.5200.11
21_I55_L0.5140.11
15_V127_D0.5140.11
4_L13_H0.5090.11
138_S144_Q0.5060.11
68_S80_S0.5040.11
42_E47_T0.5030.11
104_I110_E0.5020.11
60_E123_Q0.5000.11
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1tc3C 1 0.3054 68.4 0.922 Contact Map
2rnjA 1 0.3054 64.1 0.924 Contact Map
1je8A 2 0.3114 60.8 0.926 Contact Map
1jkoC 1 0.2754 56.4 0.928 Contact Map
2jpcA 1 0.2635 54.7 0.929 Contact Map
2x48A 1 0.3174 52.7 0.929 Contact Map
3iuoA 4 0.2994 52.5 0.929 Contact Map
3ulqB 1 0.2814 51.4 0.93 Contact Map
3c57A 2 0.2754 49.8 0.931 Contact Map
2m8eA 1 0.3293 43.6 0.933 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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