TRMFO - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

TRMFO - Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO

UniProt:	P39815	Sequences: MNQQTVNVIGAGLAGSEAAWQLAKRGIQVKLYEMRPVKQTPAHHTDKFAELVCSNSLRSNTLANAVGVLKEEMRALDSAIIAAADECSVPAGGALAVDRHEFAASVTNRVKNHPNVTVINEEVTEIPEGPTIIATGPLTSESLSAQLKELTGEDYLYFYDAAAPIVEKDSLDMDKVYLKSRYDKGEAAYLNCPMTEEEFDRFHEALTSAETVPLKEFEKEIFFEGCMPIEVMAKRGKKTMLFGPMKPVGLEHPVTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGDQKEVLKLIPGLENVEIVRYGVMHRNTFINSPSLLKPTYQFKNRSDLFFAGQMTGVEGYVESAASGLVAGINAAKLVLGEELVIFPQETAIGSMAHYITTTNQKNFQPMNANFGLLKELPVKIKNKKERNEQYANRAIETIQTISKTI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	435 (417)
Sequences:	3726 (1702)
Seq/√Len:	83.3

ECOLI - MNMG
BACSU - TRMFO MNMG

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
216_E	220_E	3.852	1.00
178_L	204_E	3.481	1.00
418_E	425_I	3.188	1.00
375_E	416_R	2.978	1.00
209_A	260_Y	2.941	1.00
153_E	328_F	2.773	1.00
125_E	146_Q	2.770	1.00
222_F	251_E	2.754	1.00
355_V	382_A	2.716	1.00
4_Q	117_T	2.694	1.00
71_E	97_V	2.683	1.00
110_V	118_V	2.632	1.00
28_Q	115_N	2.619	1.00
213_P	216_E	2.598	1.00
214_L	295_L	2.548	1.00
11_A	48_F	2.527	1.00
293_L	302_V	2.507	1.00
372_F	376_T	2.497	1.00
274_L	305_V	2.444	1.00
321_L	330_N	2.418	1.00
175_K	300_E	2.391	1.00
212_V	259_P	2.355	1.00
293_L	304_I	2.349	1.00
425_I	429_Q	2.321	1.00
418_E	428_I	2.319	1.00
70_K	106_V	2.272	1.00
323_K	327_Q	2.264	1.00
362_K	367_E	2.254	1.00
335_F	363_L	2.244	1.00
172_D	175_K	2.237	1.00
167_E	170_S	2.236	1.00
375_E	427_T	2.231	1.00
171_L	275_Y	2.230	1.00
288_D	291_E	2.222	1.00
317_N	320_S	2.206	1.00
56_S	351_A	2.198	1.00
211_T	297_P	2.181	1.00
176_V	265_L	2.158	1.00
27_I	365_L	2.129	1.00
30_K	119_I	2.120	1.00
332_S	363_L	2.083	1.00
154_D	317_N	2.058	1.00
6_V	22_L	2.037	1.00
355_V	378_I	2.035	1.00
415_E	419_Q	2.034	1.00
146_Q	149_E	1.994	1.00
111_K	120_N	1.984	1.00
171_L	176_V	1.973	1.00
224_E	287_G	1.969	1.00
169_D	273_T	1.969	1.00
154_D	321_L	1.955	1.00
16_S	40_T	1.954	1.00
24_K	113_H	1.950	1.00
29_V	116_V	1.916	1.00
56_S	393_F	1.903	1.00
265_L	299_L	1.902	1.00
105_S	108_N	1.896	1.00
156_L	315_F	1.881	1.00
327_Q	363_L	1.866	1.00
417_N	423_R	1.844	1.00
316_I	336_F	1.840	1.00
74_R	85_D	1.833	1.00
167_E	303_E	1.822	1.00
20_W	66_V	1.813	1.00
326_Y	382_A	1.800	1.00
167_E	305_V	1.797	1.00
168_K	173_M	1.796	1.00
108_N	112_N	1.789	1.00
362_K	370_V	1.764	1.00
190_L	427_T	1.733	1.00
73_M	105_S	1.730	1.00
294_K	302_V	1.705	1.00
355_V	372_F	1.703	1.00
164_P	293_L	1.692	1.00
36_P	118_V	1.684	1.00
113_H	116_V	1.672	1.00
282_T	308_G	1.658	1.00
228_P	251_E	1.657	1.00
229_I	240_M	1.641	1.00
357_G	361_A	1.631	1.00
428_I	432_S	1.628	1.00
128_E	286_W	1.613	1.00
414_K	423_R	1.583	1.00
73_M	350_A	1.577	1.00
42_A	97_V	1.576	1.00
217_F	295_L	1.552	1.00
370_V	416_R	1.540	1.00
27_I	361_A	1.537	1.00
175_K	297_P	1.536	1.00
153_E	330_N	1.527	1.00
107_T	111_K	1.519	0.99
63_A	417_N	1.517	0.99
30_K	117_T	1.471	0.99
145_A	149_E	1.466	0.99
39_Q	118_V	1.457	0.99
144_S	155_Y	1.450	0.99
20_W	113_H	1.449	0.99
82_A	109_R	1.447	0.99
22_L	27_I	1.445	0.99
377_A	398_A	1.442	0.99
220_E	291_E	1.438	0.99
57_L	67_G	1.433	0.99
35_R	45_T	1.432	0.99
173_M	275_Y	1.409	0.99
325_T	335_F	1.409	0.99
265_L	275_Y	1.408	0.99
166_V	277_I	1.406	0.99
172_D	301_N	1.391	0.99
290_K	294_K	1.390	0.99
201_R	295_L	1.388	0.99
69_L	190_L	1.386	0.99
414_K	427_T	1.386	0.99
180_S	204_E	1.384	0.99
7_N	30_K	1.381	0.99
355_V	376_T	1.378	0.99
167_E	273_T	1.366	0.99
48_F	118_V	1.364	0.99
226_C	229_I	1.360	0.99
361_A	365_L	1.355	0.99
164_P	302_V	1.338	0.99
77_D	181_R	1.338	0.99
16_S	110_V	1.329	0.99
35_R	38_K	1.327	0.99
34_M	122_E	1.327	0.99
222_F	228_P	1.326	0.99
110_V	116_V	1.321	0.99
24_K	77_D	1.306	0.98
48_F	67_G	1.305	0.98
172_D	300_E	1.304	0.98
5_T	28_Q	1.291	0.98
205_A	208_S	1.289	0.98
326_Y	352_S	1.281	0.98
74_R	105_S	1.280	0.98
66_V	70_K	1.279	0.98
27_I	364_V	1.277	0.98
145_A	148_K	1.262	0.98
60_N	354_L	1.246	0.98
16_S	106_V	1.244	0.98
231_V	234_K	1.244	0.98
75_A	78_S	1.242	0.98
166_V	302_V	1.241	0.98
148_K	155_Y	1.241	0.98
111_K	118_V	1.241	0.98
290_K	304_I	1.234	0.98
105_S	109_R	1.231	0.98
166_V	171_L	1.228	0.98
351_A	381_M	1.223	0.98
92_G	406_L	1.223	0.98
336_F	340_M	1.220	0.98
125_E	149_E	1.217	0.98
39_Q	46_D	1.213	0.97
25_R	362_K	1.212	0.97
168_K	272_G	1.205	0.97
357_G	360_A	1.205	0.97
32_Y	119_I	1.202	0.97
328_F	334_L	1.202	0.97
70_K	105_S	1.194	0.97
216_E	219_K	1.188	0.97
164_P	292_V	1.182	0.97
32_Y	121_E	1.182	0.97
83_A	105_S	1.175	0.97
210_E	285_K	1.174	0.97
7_N	32_Y	1.172	0.97
168_K	275_Y	1.171	0.97
325_T	369_L	1.166	0.97
22_L	360_A	1.157	0.97
20_W	24_K	1.153	0.97
28_Q	117_T	1.147	0.96
415_E	418_E	1.141	0.96
4_Q	30_K	1.140	0.96
94_A	181_R	1.137	0.96
101_E	104_A	1.135	0.96
134_A	137_P	1.122	0.96
104_A	108_N	1.121	0.96
80_I	406_L	1.116	0.96
22_L	29_V	1.115	0.96
323_K	332_S	1.112	0.96
51_L	91_A	1.112	0.96
60_N	88_S	1.111	0.96
9_I	123_V	1.111	0.96
208_S	299_L	1.108	0.96
99_R	268_D	1.107	0.96
80_I	350_A	1.099	0.95
32_Y	123_V	1.098	0.95
190_L	414_K	1.089	0.95
370_V	420_Y	1.084	0.95
354_L	358_I	1.082	0.95
324_P	386_T	1.080	0.95
252_H	257_K	1.077	0.95
428_I	431_I	1.077	0.95
221_I	224_E	1.076	0.95
73_M	109_R	1.074	0.95
146_Q	150_L	1.074	0.95
36_P	120_N	1.073	0.95
211_T	234_K	1.073	0.95
269_D	273_T	1.072	0.95
94_A	97_V	1.071	0.95
131_T	139_T	1.070	0.95
48_F	57_L	1.069	0.95
178_L	206_L	1.067	0.95
389_N	392_N	1.059	0.94
219_K	256_G	1.058	0.94
100_H	271_A	1.057	0.94
5_T	30_K	1.056	0.94
70_K	109_R	1.054	0.94
131_T	141_E	1.048	0.94
283_H	310_M	1.047	0.94
171_L	299_L	1.045	0.94
292_V	295_L	1.041	0.94
76_L	203_H	1.038	0.94
362_K	419_Q	1.034	0.94
190_L	423_R	1.033	0.94
176_V	208_S	1.032	0.94
162_A	309_V	1.030	0.94
55_N	91_A	1.020	0.93
5_T	27_I	1.019	0.93
71_E	74_R	1.016	0.93
280_F	296_I	1.014	0.93
343_V	349_S	1.007	0.93
71_E	94_A	1.005	0.93
203_H	270_A	1.005	0.93
92_G	278_V	1.002	0.93
66_V	347_V	0.997	0.92
6_V	27_I	0.995	0.92
35_R	40_T	0.991	0.92
122_E	142_S	0.991	0.92
124_T	142_S	0.988	0.92
37_V	120_N	0.987	0.92
158_F	315_F	0.987	0.92
374_Q	383_H	0.986	0.92
425_I	428_I	0.985	0.92
74_R	101_E	0.980	0.92
414_K	431_I	0.979	0.92
171_L	265_L	0.979	0.92
23_A	113_H	0.978	0.92
66_V	106_V	0.976	0.92
126_I	133_I	0.976	0.92
142_S	145_A	0.974	0.92
36_P	107_T	0.970	0.91
175_K	298_G	0.970	0.91
218_E	246_K	0.970	0.91
426_E	430_T	0.964	0.91
380_S	398_A	0.962	0.91
207_T	262_V	0.960	0.91
333_D	363_L	0.957	0.91
60_N	350_A	0.956	0.91
269_D	272_G	0.955	0.91
213_P	291_E	0.954	0.91
25_R	365_L	0.947	0.90
135_T	139_T	0.946	0.90
362_K	365_L	0.945	0.90
424_A	427_T	0.944	0.90
71_E	75_A	0.943	0.90
252_H	256_G	0.939	0.90
47_K	103_A	0.935	0.90
87_C	101_E	0.933	0.90
58_R	66_V	0.932	0.90
280_F	292_V	0.925	0.89
265_L	277_I	0.924	0.89
24_K	66_V	0.923	0.89
290_K	303_E	0.922	0.89
155_Y	316_I	0.922	0.89
223_F	226_C	0.920	0.89
429_Q	432_S	0.914	0.89
164_P	308_G	0.913	0.89
290_K	307_Y	0.907	0.88
181_R	202_F	0.904	0.88
316_I	321_L	0.903	0.88
49_A	106_V	0.903	0.88
286_W	307_Y	0.901	0.88
87_C	105_S	0.901	0.88
304_I	307_Y	0.901	0.88
20_W	110_V	0.900	0.88
31_L	110_V	0.900	0.88
192_C	430_T	0.892	0.88
34_M	38_K	0.888	0.87
51_L	394_Q	0.882	0.87
80_I	92_G	0.873	0.86
76_L	270_A	0.867	0.86
294_K	303_E	0.867	0.86
64_N	424_A	0.865	0.86
169_D	303_E	0.864	0.86
82_A	86_E	0.863	0.86
122_E	140_S	0.861	0.86
66_V	69_L	0.856	0.85
398_A	404_K	0.855	0.85
86_E	105_S	0.855	0.85
256_G	260_Y	0.855	0.85
83_A	106_V	0.854	0.85
191_N	194_M	0.853	0.85
59_S	93_G	0.851	0.85
100_H	104_A	0.844	0.84
11_A	31_L	0.844	0.84
23_A	116_V	0.843	0.84
20_W	79_A	0.842	0.84
22_L	364_V	0.842	0.84
19_A	116_V	0.841	0.84
335_F	369_L	0.840	0.84
48_F	71_E	0.840	0.84
224_E	288_D	0.837	0.84
8_V	22_L	0.835	0.84
107_T	305_V	0.834	0.84
25_R	420_Y	0.828	0.83
78_S	394_Q	0.826	0.83
25_R	358_I	0.824	0.83
25_R	361_A	0.821	0.83
35_R	39_Q	0.812	0.82
416_R	419_Q	0.810	0.82
52_V	55_N	0.808	0.82
141_E	144_S	0.807	0.82
361_A	364_V	0.805	0.82
16_S	70_K	0.799	0.81
38_K	41_P	0.795	0.81
177_Y	251_E	0.794	0.81
328_F	332_S	0.793	0.81
20_W	109_R	0.786	0.80
66_V	109_R	0.784	0.80
58_R	92_G	0.783	0.80
99_R	277_I	0.782	0.80
173_M	190_L	0.781	0.80
212_V	219_K	0.780	0.80
356_A	360_A	0.780	0.80
178_L	275_Y	0.780	0.80
51_L	78_S	0.778	0.79
405_E	408_V	0.777	0.79
351_A	378_I	0.774	0.79
256_G	259_P	0.773	0.79
211_T	215_K	0.771	0.79
36_P	111_K	0.769	0.79
263_V	280_F	0.769	0.79
150_L	330_N	0.764	0.78
325_T	362_K	0.763	0.78
168_K	178_L	0.761	0.78
29_V	113_H	0.757	0.77
423_R	431_I	0.757	0.77
315_F	394_Q	0.756	0.77
168_K	273_T	0.754	0.77
224_E	235_R	0.752	0.77
228_P	248_V	0.752	0.77
412_N	415_E	0.751	0.77
38_K	137_P	0.748	0.77
280_F	293_L	0.748	0.77
109_R	112_N	0.747	0.77
377_A	403_L	0.746	0.76
287_G	291_E	0.741	0.76
74_R	97_V	0.740	0.76
43_H	51_L	0.738	0.76
34_M	140_S	0.736	0.75
325_T	359_N	0.735	0.75
286_W	309_V	0.734	0.75
141_E	145_A	0.732	0.75
418_E	423_R	0.731	0.75
335_F	364_V	0.729	0.75
176_V	298_G	0.729	0.75
411_K	415_E	0.726	0.74
36_P	305_V	0.724	0.74
150_L	331_R	0.724	0.74
296_I	299_L	0.723	0.74
410_I	414_K	0.720	0.74
106_V	110_V	0.718	0.74
77_D	82_A	0.718	0.74
40_T	45_T	0.714	0.73
78_S	92_G	0.714	0.73
21_Q	25_R	0.713	0.73
146_Q	331_R	0.711	0.73
204_E	208_S	0.710	0.73
167_E	274_L	0.708	0.73
56_S	381_M	0.708	0.73
35_R	120_N	0.707	0.73
179_K	251_E	0.707	0.73
263_V	277_I	0.705	0.72
7_N	131_T	0.704	0.72
335_F	359_N	0.704	0.72
77_D	202_F	0.703	0.72
209_A	292_V	0.701	0.72
215_K	219_K	0.700	0.72
408_V	412_N	0.696	0.71
277_I	280_F	0.694	0.71
417_N	422_N	0.694	0.71
290_K	293_L	0.692	0.71
41_P	135_T	0.689	0.71
70_K	97_V	0.689	0.71
316_I	328_F	0.687	0.70
291_E	297_P	0.687	0.70
293_L	308_G	0.683	0.70
283_H	309_V	0.683	0.70
51_L	90_P	0.682	0.70
43_H	394_Q	0.680	0.70
144_S	148_K	0.679	0.69
120_N	274_L	0.678	0.69
27_I	115_N	0.677	0.69
176_V	299_L	0.676	0.69
294_K	304_I	0.675	0.69
417_N	425_I	0.673	0.69
52_V	393_F	0.672	0.69
26_G	115_N	0.672	0.69
101_E	105_S	0.671	0.69
166_V	299_L	0.670	0.68
358_I	422_N	0.670	0.68
159_Y	221_I	0.669	0.68
251_E	258_R	0.669	0.68
359_N	371_I	0.668	0.68
291_E	295_L	0.668	0.68
117_T	303_E	0.667	0.68
286_W	290_K	0.666	0.68
101_E	270_A	0.665	0.68
51_L	92_G	0.664	0.68
147_L	336_F	0.664	0.68
213_P	295_L	0.663	0.68
328_F	331_R	0.661	0.67
224_E	227_M	0.660	0.67
6_V	364_V	0.659	0.67
9_I	32_Y	0.659	0.67
36_P	110_V	0.656	0.67
358_I	362_K	0.656	0.67
81_I	347_V	0.655	0.67
22_L	26_G	0.655	0.67
227_M	310_M	0.654	0.67
378_I	382_A	0.653	0.66
68_V	421_A	0.653	0.66
163_A	268_D	0.652	0.66
328_F	336_F	0.652	0.66
343_V	352_S	0.652	0.66
331_R	334_L	0.649	0.66
41_P	99_R	0.649	0.66
171_L	190_L	0.649	0.66
205_A	295_L	0.648	0.66
47_K	104_A	0.647	0.66
327_Q	333_D	0.646	0.66
426_E	429_Q	0.646	0.66
365_L	419_Q	0.644	0.65
75_A	429_Q	0.643	0.65
226_C	231_V	0.640	0.65
8_V	358_I	0.637	0.65
51_L	278_V	0.635	0.64
127_P	133_I	0.635	0.64
25_R	422_N	0.633	0.64
41_P	103_A	0.632	0.64
129_G	231_V	0.632	0.64
351_A	393_F	0.629	0.64
240_M	245_M	0.628	0.63
62_L	421_A	0.627	0.63
73_M	354_L	0.626	0.63
24_K	115_N	0.625	0.63
411_K	431_I	0.625	0.63
79_A	110_V	0.624	0.63
227_M	230_E	0.622	0.63
176_V	297_P	0.621	0.63
208_S	263_V	0.621	0.63
90_P	406_L	0.621	0.63
335_F	362_K	0.620	0.62
224_E	291_E	0.620	0.62
154_D	304_I	0.619	0.62
23_A	115_N	0.619	0.62
214_L	217_F	0.616	0.62
358_I	370_V	0.615	0.62
154_D	330_N	0.612	0.61
357_G	362_K	0.612	0.61
153_E	320_S	0.612	0.61
203_H	241_L	0.612	0.61
58_R	348_E	0.611	0.61
205_A	210_E	0.611	0.61
180_S	183_D	0.611	0.61
227_M	235_R	0.610	0.61
69_L	109_R	0.610	0.61
368_E	419_Q	0.609	0.61
157_Y	221_I	0.609	0.61
43_H	278_V	0.608	0.61
18_A	132_I	0.608	0.61
60_N	85_D	0.608	0.61
34_M	137_P	0.608	0.61
170_S	303_E	0.607	0.61
43_H	92_G	0.605	0.61
134_A	311_H	0.605	0.61
41_P	51_L	0.605	0.61
11_A	107_T	0.605	0.61
78_S	94_A	0.603	0.60
252_H	258_R	0.603	0.60
123_V	146_Q	0.602	0.60
273_T	305_V	0.602	0.60
415_E	431_I	0.601	0.60
80_I	83_A	0.601	0.60
58_R	406_L	0.600	0.60
130_P	360_A	0.600	0.60
64_N	69_L	0.600	0.60
156_L	314_T	0.599	0.60
232_M	235_R	0.599	0.60
115_N	301_N	0.599	0.60
229_I	251_E	0.598	0.60
201_R	204_E	0.595	0.59
76_L	378_I	0.595	0.59
39_Q	45_T	0.595	0.59
213_P	297_P	0.594	0.59
173_M	206_L	0.593	0.59
122_E	137_P	0.592	0.59
398_A	403_L	0.592	0.59
83_A	90_P	0.592	0.59
55_N	393_F	0.591	0.59
209_A	284_L	0.590	0.59
153_E	316_I	0.590	0.59
376_T	380_S	0.589	0.59
292_V	296_I	0.589	0.59
372_F	375_E	0.588	0.58
355_V	370_V	0.588	0.58
119_I	303_E	0.587	0.58
246_K	282_T	0.586	0.58
221_I	288_D	0.585	0.58
212_V	216_E	0.583	0.58
235_R	311_H	0.582	0.58
140_S	144_S	0.581	0.58
321_L	328_F	0.581	0.58
418_E	431_I	0.581	0.58
367_E	419_Q	0.580	0.57
278_V	394_Q	0.578	0.57
418_E	424_A	0.578	0.57
94_A	189_Y	0.575	0.57
414_K	417_N	0.575	0.57
52_V	344_E	0.573	0.56
415_E	428_I	0.572	0.56
383_H	389_N	0.571	0.56
193_P	199_F	0.570	0.56
385_I	390_Q	0.570	0.56
19_A	23_A	0.570	0.56
16_S	35_R	0.569	0.56
159_Y	220_E	0.569	0.56
60_N	67_G	0.569	0.56
51_L	55_N	0.569	0.56
417_N	420_Y	0.565	0.55
75_A	185_G	0.564	0.55
419_Q	422_N	0.564	0.55
349_S	397_N	0.563	0.55
80_I	90_P	0.563	0.55
80_I	106_V	0.563	0.55
324_P	371_I	0.562	0.55
205_A	267_Q	0.562	0.55
35_R	137_P	0.561	0.55
277_I	293_L	0.561	0.55
43_H	78_S	0.560	0.55
360_A	364_V	0.559	0.55
78_S	278_V	0.558	0.55
22_L	28_Q	0.556	0.54
218_E	250_L	0.556	0.54
85_D	88_S	0.555	0.54
137_P	191_N	0.554	0.54
264_Q	282_T	0.554	0.54
228_P	232_M	0.554	0.54
126_I	307_Y	0.553	0.54
52_V	56_S	0.553	0.54
267_Q	272_G	0.552	0.54
201_R	270_A	0.552	0.54
40_T	43_H	0.551	0.54
91_A	394_Q	0.549	0.53
419_Q	423_R	0.549	0.53
392_N	412_N	0.549	0.53
21_Q	24_K	0.547	0.53
47_K	51_L	0.547	0.53
153_E	336_F	0.547	0.53
341_T	352_S	0.547	0.53
296_I	300_E	0.545	0.53
16_S	357_G	0.545	0.53
362_K	420_Y	0.543	0.53
134_A	278_V	0.543	0.53
177_Y	260_Y	0.542	0.52
137_P	315_F	0.542	0.52
126_I	135_T	0.541	0.52
213_P	217_F	0.540	0.52
335_F	358_I	0.540	0.52
51_L	344_E	0.540	0.52
83_A	92_G	0.538	0.52
24_K	82_A	0.538	0.52
317_N	321_L	0.538	0.52
359_N	362_K	0.537	0.52
274_L	306_R	0.536	0.52
19_A	31_L	0.535	0.51
348_E	398_A	0.535	0.51
226_C	230_E	0.535	0.51
325_T	363_L	0.532	0.51
134_A	394_Q	0.531	0.51
142_S	147_L	0.531	0.51
352_S	382_A	0.530	0.51
336_F	394_Q	0.530	0.51
99_R	135_T	0.528	0.51
190_L	426_E	0.527	0.50
327_Q	335_F	0.526	0.50
82_A	105_S	0.525	0.50
175_K	178_L	0.524	0.50
396_M	399_N	0.524	0.50
79_A	179_K	0.522	0.50
381_M	393_F	0.522	0.50
416_R	423_R	0.522	0.50
58_R	286_W	0.520	0.49
418_E	422_N	0.520	0.49
44_H	162_A	0.519	0.49
114_P	174_D	0.518	0.49
106_V	311_H	0.518	0.49
242_F	248_V	0.517	0.49
272_G	275_Y	0.515	0.49
209_A	256_G	0.514	0.49
61_T	162_A	0.514	0.49
382_A	386_T	0.514	0.49
374_Q	391_K	0.513	0.49
54_S	187_A	0.512	0.48
7_N	129_G	0.512	0.48
41_P	137_P	0.511	0.48
410_I	413_K	0.510	0.48
240_M	281_Q	0.510	0.48
325_T	370_V	0.510	0.48
229_I	232_M	0.509	0.48
348_E	397_N	0.508	0.48
18_A	356_A	0.508	0.48
8_V	132_I	0.508	0.48
58_R	347_V	0.507	0.48
229_I	248_V	0.506	0.48
87_C	407_P	0.506	0.48
383_H	387_T	0.505	0.48
132_I	360_A	0.504	0.47
52_V	91_A	0.504	0.47
78_S	185_G	0.503	0.47
418_E	432_S	0.503	0.47
24_K	109_R	0.503	0.47
106_V	109_R	0.503	0.47
372_F	420_Y	0.503	0.47
188_A	191_N	0.501	0.47
11_A	34_M	0.501	0.47
78_S	90_P	0.501	0.47
159_Y	281_Q	0.500	0.47

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3cp8A	2	0.9517	100	0.439	Contact Map
3cesA	2	0.9356	100	0.452	Contact Map
2zxiA	2	0.9563	100	0.48	Contact Map
3g5sA	1	0.9632	100	0.485	Contact Map
3v76A	2	0.7172	100	0.854	Contact Map
3nlcA	1	0.823	99.9	0.855	Contact Map
4cnkA	2	0.754	99.9	0.867	Contact Map
2culA	1	0.4184	99.8	0.886	Contact Map
2i0zA	1	0.7586	99.6	0.912	Contact Map
2gqfA	4	0.7379	99.4	0.921	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0121 seconds.