GREMLIN Database
GLTA - Glutamate synthase [NADPH] large chain
UniProt: P39812 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 1520 (1457)
Sequences: 2337 (1087)
Seq/√Len: 28.5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
1444_T1452_A6.5641.00
585_I600_M6.5101.00
1168_T1171_E5.6531.00
1346_E1442_R5.3311.00
73_D77_R5.0841.00
31_K380_D5.0581.00
78_K218_A4.9271.00
1032_I1076_V4.9221.00
318_I352_I4.8081.00
657_S660_A4.8051.00
69_V219_F4.7821.00
1091_V1157_V4.7491.00
1166_F1172_M4.7181.00
824_Y1149_Y4.7171.00
74_A220_V4.7171.00
510_F631_P4.6971.00
144_C210_F4.6661.00
585_I604_A4.6021.00
378_K397_N4.4541.00
853_E1167_K4.3211.00
109_E148_R4.1441.00
1406_L1462_S4.1331.00
296_L317_L4.0741.00
821_F825_T4.0631.00
39_V221_S4.0071.00
1229_A1244_I3.9881.00
604_A615_L3.9751.00
334_A436_Q3.9631.00
1261_I1295_M3.9421.00
857_A1155_E3.8751.00
1287_F1297_L3.8131.00
1385_V1436_I3.7321.00
1032_I1078_L3.6051.00
813_C1110_V3.6031.00
1348_Y1442_R3.5581.00
1427_L1436_I3.5511.00
861_V889_L3.5291.00
623_N626_L3.4971.00
1246_I1279_F3.4121.00
921_I939_L3.4091.00
760_D763_T3.3981.00
1017_V1034_I3.3711.00
37_D41_Q3.3611.00
915_R937_D3.3371.00
482_V709_S3.3291.00
1170_D1208_T3.3111.00
666_F710_I3.2941.00
1080_T1093_A3.2921.00
917_A937_D3.2671.00
742_R746_D3.2581.00
1371_I1375_G3.2551.00
1161_M1172_M3.2141.00
594_E747_R3.2121.00
843_D1180_H3.1951.00
698_S701_E3.1921.00
1383_S1435_Q3.1741.00
76_F196_I3.1401.00
29_H33_K3.1331.00
121_Q171_I3.1271.00
94_G191_L3.0891.00
152_I191_L3.0871.00
1004_D1263_K3.0781.00
1458_Q1461_D3.0781.00
1134_E1137_K3.0681.00
822_K1159_E3.0611.00
841_A1180_H3.0441.00
487_K712_E3.0261.00
418_R424_E3.0101.00
1358_A1384_V3.0001.00
383_I393_V2.9861.00
1091_V1160_Y2.9471.00
1395_A1422_I2.9441.00
605_E645_K2.9191.00
934_V1259_S2.9181.00
856_S859_S2.9141.00
1101_F1173_I2.8831.00
583_Q612_V2.8821.00
112_I175_A2.8641.00
609_S647_L2.8231.00
128_T148_R2.8151.00
672_Y752_T2.8091.00
742_R757_G2.8011.00
566_N678_N2.7951.00
1166_F1178_V2.7931.00
1291_V1295_M2.7931.00
1167_K1171_E2.7911.00
881_A1111_L2.7831.00
1278_H1298_Y2.7761.00
586_D626_L2.7721.00
1234_I1265_Y2.7461.00
116_I171_I2.7441.00
330_K334_A2.7441.00
588_L626_L2.7401.00
388_V1302_D2.7031.00
1432_E1468_K2.6951.00
808_T823_Q2.6931.00
116_I123_V2.6761.00
41_Q381_Y2.6761.00
599_D603_Q2.6691.00
818_Y822_K2.6381.00
1258_G1292_P2.6290.99
1276_K1298_Y2.6200.99
1334_I1353_A2.6120.99
826_K830_E2.5920.99
70_Q222_A2.5860.99
1408_E1465_K2.5800.99
1279_F1287_F2.5740.99
882_L1146_I2.5730.99
1300_D1319_K2.5640.99
1025_A1032_I2.5490.99
1227_L1256_I2.5470.99
467_A628_P2.5370.99
475_I685_T2.5270.99
1327_A1330_D2.5260.99
748_Y761_L2.5250.99
1406_L1465_K2.5240.99
701_E705_K2.5220.99
1375_G1394_F2.4930.99
585_I615_L2.4850.99
1235_E1264_R2.4820.99
1433_I1463_V2.4730.99
1260_E1264_R2.4710.99
818_Y1159_E2.4660.99
1296_T1317_I2.4580.99
930_S1262_S2.4410.99
573_K584_K2.4160.99
160_D163_S2.4140.99
1427_L1463_V2.4080.99
465_Q685_T2.4050.99
1409_D1412_A2.3850.99
1001_A1259_S2.3800.99
1095_L1172_M2.3770.99
1243_S1278_H2.3650.99
300_F313_T2.3630.99
1298_Y1319_K2.3510.99
1172_M1178_V2.3500.99
667_A714_V2.3300.99
507_Q511_N2.3270.99
857_A1151_L2.3240.99
939_L1007_I2.3060.99
1122_D1132_N2.2990.99
1307_V1316_I2.2890.99
457_Q460_D2.2660.98
330_K436_Q2.2600.98
1025_A1076_V2.2600.98
1334_I1338_A2.2580.98
1453_E1457_D2.2540.98
601_F637_A2.2510.98
1437_K1441_E2.2390.98
825_T1156_E2.2390.98
1169_F1173_I2.2380.98
1161_M1169_F2.2320.98
996_H1220_S2.2280.98
223_F414_L2.2230.98
1300_D1322_E2.2080.98
842_F1164_L2.2060.98
889_L1147_V2.2020.98
1160_Y1163_A2.1910.98
378_K1325_N2.1900.98
524_P943_M2.1830.98
73_D91_Y2.1750.98
1234_I1264_R2.1680.98
605_E647_L2.1660.98
587_V617_L2.1610.98
614_L654_I2.1490.98
1315_K1346_E2.1340.98
876_K880_E2.1310.98
1080_T1084_L2.1200.98
844_G1163_A2.1180.98
1376_C1394_F2.1140.98
247_L296_L2.1130.98
133_V144_C2.1120.98
888_R912_D2.1080.97
1288_G1316_I2.1050.97
767_E1190_K2.1030.97
1161_M1168_T2.0960.97
717_V1047_T2.0940.97
1273_D1315_K2.0930.97
351_A372_A2.0930.97
378_K399_L2.0780.97
400_Y421_S2.0680.97
1385_V1439_M2.0620.97
1273_D1296_T2.0620.97
845_N849_L2.0520.97
859_S862_K2.0390.97
396_E1323_G2.0330.97
527_A719_S2.0320.97
636_S748_Y2.0270.97
605_E641_H2.0130.97
1423_L1472_K1.9940.96
1315_K1446_Y1.9910.96
846_R1166_F1.9890.96
1175_R1178_V1.9830.96
1090_V1153_I1.9790.96
888_R910_N1.9780.96
74_A218_A1.9700.96
1455_L1462_S1.9670.96
632_L668_A1.9640.96
90_R154_A1.9630.96
1368_V1371_I1.9560.96
105_R146_F1.9520.96
930_S1001_A1.9440.96
1417_C1424_F1.9430.96
1413_F1417_C1.9420.96
766_E770_R1.9270.96
1231_Q1235_E1.9130.96
880_E914_R1.9130.96
888_R913_D1.9080.95
557_I572_L1.9060.95
94_G150_V1.8980.95
113_N126_W1.8940.95
606_K610_Q1.8840.95
354_F361_G1.8800.95
48_Q392_E1.8760.95
802_N805_T1.8720.95
934_V1263_K1.8660.95
1348_Y1439_M1.8630.95
841_A1182_S1.8580.95
122_V153_G1.8470.95
589_F769_Q1.8300.94
884_I888_R1.8180.94
644_R750_S1.8080.94
1288_G1297_L1.8080.94
1206_V1210_Q1.8020.94
75_F219_F1.7980.94
1259_S1263_K1.7930.94
1063_A1078_L1.7890.94
78_K216_D1.7890.94
858_E1151_L1.7880.94
1176_T1200_L1.7840.93
113_N117_E1.7760.93
1116_M1125_P1.7710.93
538_T730_R1.7660.93
312_H339_H1.7620.93
573_K616_I1.7500.93
1390_V1413_F1.7500.93
1278_H1300_D1.7310.92
212_S215_Q1.7170.92
437_K441_E1.7130.92
1220_S1250_N1.7120.92
375_Y388_V1.7100.92
1220_S1223_I1.7040.92
1328_S1450_Q1.7020.92
1339_F1347_A1.7010.92
1287_F1299_L1.6970.92
1169_F1172_M1.6920.91
931_H1267_E1.6900.91
602_T641_H1.6890.91
563_V677_I1.6880.91
278_D281_K1.6880.91
871_F967_V1.6870.91
888_R1147_V1.6840.91
915_R935_N1.6780.91
315_M429_I1.6670.91
1149_Y1153_I1.6670.91
1342_A1364_V1.6610.91
1017_V1063_A1.6600.91
421_S424_E1.6580.91
1408_E1451_K1.6580.91
138_T142_K1.6540.91
1425_E1475_K1.6540.91
1339_F1364_V1.6530.90
840_F1199_L1.6450.90
586_D621_K1.6440.90
871_F963_W1.6390.90
1365_N1439_M1.6380.90
740_I744_V1.6330.90
1350_N1451_K1.6320.90
436_Q440_E1.6320.90
688_Q692_E1.6320.90
154_A164_F1.6280.90
1144_D1147_V1.6240.90
821_F1149_Y1.6230.90
260_I295_I1.6200.90
1329_D1350_N1.6170.89
1418_N1422_I1.6150.89
31_K417_G1.6090.89
311_A359_Q1.6080.89
1257_T1295_M1.6050.89
849_L1167_K1.6030.89
549_P553_N1.6030.89
667_A717_V1.6020.89
588_L621_K1.5980.89
1385_V1440_L1.5930.89
1339_F1358_A1.5890.89
376_V419_I1.5860.89
1091_V1172_M1.5860.89
1348_Y1446_Y1.5860.89
1454_D1458_Q1.5830.88
1338_A1353_A1.5820.88
112_I150_V1.5810.88
996_H1252_V1.5760.88
1157_V1161_M1.5750.88
1003_R1259_S1.5730.88
1001_A1255_T1.5630.88
1276_K1296_T1.5610.88
1436_I1463_V1.5510.87
1074_D1210_Q1.5470.87
26_L360_I1.5370.87
718_M726_V1.5340.87
1441_E1445_A1.5310.87
1319_K1322_E1.5250.86
1226_I1277_L1.5250.86
109_E128_T1.5230.86
1224_T1250_N1.5220.86
508_S771_R1.5220.86
931_H935_N1.5210.86
76_F93_V1.5120.86
115_L174_Q1.5120.86
737_A745_I1.5080.86
1458_Q1462_S1.5070.86
1230_V1277_L1.5070.86
409_M425_V1.5050.86
133_V210_F1.4990.86
382_I410_L1.4990.86
845_N848_P1.4970.85
858_E861_V1.4940.85
374_Y400_Y1.4930.85
92_G191_L1.4930.85
1272_E1315_K1.4920.85
561_T711_T1.4920.85
1307_V1318_V1.4890.85
744_V761_L1.4880.85
873_S1104_A1.4880.85
846_R1175_R1.4870.85
744_V764_I1.4860.85
1259_S1262_S1.4860.85
861_V1151_L1.4850.85
910_N913_D1.4820.85
96_V188_F1.4700.84
314_A317_L1.4670.84
846_R1178_V1.4670.84
531_Q712_E1.4600.84
1157_V1169_F1.4520.84
825_T829_D1.4490.83
32_G414_L1.4460.83
1329_D1454_D1.4450.83
1291_V1314_G1.4430.83
316_M339_H1.4420.83
1451_K1454_D1.4420.83
29_H380_D1.4400.83
492_S1120_H1.4390.83
1427_L1433_I1.4350.83
601_F747_R1.4340.83
1168_T1172_M1.4300.83
358_K415_E1.4270.83
1261_I1275_I1.4250.82
1246_I1253_A1.4240.82
536_T715_V1.4200.82
58_D139_V1.4190.82
95_M149_Q1.4170.82
620_K656_E1.4150.82
161_N193_S1.4100.82
1297_L1316_I1.4100.82
1128_V1139_F1.4100.82
1426_S1467_V1.4050.82
42_G224_A1.4010.81
479_L682_A1.4000.81
467_A622_M1.4000.81
394_E397_N1.3980.81
736_E755_Q1.3970.81
1298_Y1446_Y1.3960.81
662_E665_H1.3940.81
464_R684_A1.3930.81
1339_F1366_V1.3910.81
36_H40_K1.3890.81
123_V150_V1.3880.81
1253_A1279_F1.3880.81
1156_E1159_E1.3870.81
683_Y707_G1.3750.80
584_K618_S1.3750.80
1142_D1145_H1.3730.80
152_I171_I1.3730.80
842_F1091_V1.3720.80
763_T1193_Q1.3700.80
1242_I1279_F1.3690.80
1242_I1277_L1.3680.80
572_L614_L1.3680.80
83_I125_G1.3650.80
1084_L1101_F1.3640.80
1262_S1292_P1.3620.79
759_I763_T1.3610.79
1383_S1439_M1.3600.79
842_F1160_Y1.3600.79
741_S757_G1.3580.79
765_A769_Q1.3580.79
741_S760_D1.3580.79
1088_R1092_M1.3550.79
395_Q1323_G1.3480.79
262_W731_G1.3450.79
865_K1079_E1.3450.79
853_E1171_E1.3430.78
1074_D1211_S1.3430.78
99_S108_I1.3400.78
331_E431_T1.3390.78
1317_I1446_Y1.3390.78
1074_D1206_V1.3380.78
1094_A1173_I1.3350.78
119_E174_Q1.3330.78
829_D1160_Y1.3270.78
1233_A1274_T1.3270.78
385_S390_V1.3250.77
1442_R1446_Y1.3240.77
118_Q174_Q1.3200.77
767_E1189_W1.3180.77
816_N1148_N1.3180.77
1094_A1169_F1.3180.77
1383_S1402_I1.3150.77
1308_G1316_I1.3150.77
905_F935_N1.3140.77
1080_T1101_F1.3110.77
132_N212_S1.3100.77
427_T431_T1.3100.77
635_V655_V1.3080.77
1209_F1212_P1.3080.77
1440_L1455_L1.3070.77
938_E1006_R1.3070.77
818_Y1155_E1.3050.76
686_Y702_A1.3040.76
1155_E1159_E1.3020.76
1389_D1409_D1.3000.76
95_M147_V1.2990.76
1226_I1244_I1.2940.76
1440_L1444_T1.2940.76
479_L686_Y1.2910.76
86_P89_E1.2900.76
1258_G1295_M1.2890.75
441_E551_E1.2880.75
1246_I1283_A1.2870.75
802_N827_A1.2860.75
1241_D1276_K1.2840.75
432_E549_P1.2830.75
601_F638_L1.2820.75
1255_T1259_S1.2820.75
1223_I1256_I1.2790.75
483_I705_K1.2780.75
26_L384_F1.2780.75
1095_L1166_F1.2740.75
1077_V1209_F1.2690.74
110_K113_N1.2670.74
1071_G1205_G1.2650.74
25_G45_M1.2620.74
1006_R1077_V1.2610.74
115_L118_Q1.2600.74
996_H1250_N1.2580.74
116_I152_I1.2570.74
1462_S1465_K1.2500.73
290_G298_N1.2500.73
740_I745_I1.2490.73
503_S797_E1.2490.73
299_A317_L1.2380.72
851_L1155_E1.2380.72
1234_I1261_I1.2360.72
1366_V1384_V1.2360.72
147_V210_F1.2350.72
131_V136_I1.2310.72
590_S626_L1.2310.72
1408_E1462_S1.2290.72
38_I381_Y1.2240.72
1334_I1349_I1.2230.72
884_I912_D1.2220.71
690_I699_Y1.2210.71
379_D397_N1.2170.71
71_I93_V1.2140.71
1202_Q1207_R1.2140.71
800_A835_F1.2130.71
895_S937_D1.2110.71
1425_E1468_K1.2110.71
1257_T1275_I1.2070.70
544_G553_N1.2070.70
1214_N1217_I1.2030.70
848_P1163_A1.2020.70
660_A666_F1.2020.70
930_S1292_P1.2010.70
197_V242_H1.2010.70
1329_D1451_K1.2000.70
92_G164_F1.1990.70
1161_M1166_F1.1990.70
69_V196_I1.1980.70
422_D426_K1.1960.70
106_K110_K1.1940.70
737_A752_T1.1930.70
24_I54_G1.1910.69
840_F1200_L1.1890.69
132_N209_A1.1890.69
641_H645_K1.1870.69
608_I651_V1.1860.69
594_E598_K1.1820.69
1346_E1446_Y1.1800.69
300_F314_A1.1800.69
587_V634_A1.1790.69
524_P944_A1.1790.69
329_S334_A1.1780.69
600_M615_L1.1780.69
71_I219_F1.1770.69
1424_F1469_V1.1760.68
598_K747_R1.1650.68
28_A382_I1.1650.68
605_E609_S1.1600.67
1028_T1216_K1.1590.67
269_Q650_K1.1550.67
825_T1086_T1.1550.67
596_G603_Q1.1520.67
1184_R1193_Q1.1480.67
1241_D1278_H1.1470.66
905_F912_D1.1460.66
1034_I1063_A1.1440.66
61_T140_A1.1420.66
1227_L1257_T1.1410.66
74_A78_K1.1400.66
654_I676_A1.1400.66
1093_A1101_F1.1390.66
382_I412_I1.1380.66
416_E428_Q1.1360.66
54_G1028_T1.1350.66
1228_P1231_Q1.1340.66
884_I1143_P1.1330.66
636_S761_L1.1330.66
1169_F1178_V1.1300.65
80_C83_I1.1290.65
600_M603_Q1.1290.65
1260_E1263_K1.1280.65
119_E171_I1.1170.64
267_E646_G1.1170.64
600_M629_I1.1130.64
708_K712_E1.1130.64
940_Q1079_E1.1120.64
1240_A1275_I1.1110.64
1440_L1452_A1.1090.64
789_D1050_K1.1090.64
745_I754_S1.1080.64
1477_M1481_I1.1070.64
80_C125_G1.1060.64
1320_S1350_N1.1030.63
1358_A1366_V1.1030.63
564_L676_A1.1030.63
434_P438_W1.1010.63
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219_F577_H0.5160.22
446_V676_A0.5160.22
710_I1258_G0.5160.22
174_Q603_Q0.5150.22
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333_R1460_E0.5150.22
91_Y1079_E0.5150.22
1203_P1440_L0.5150.22
131_V1200_L0.5150.22
597_L761_L0.5150.22
171_I1203_P0.5140.22
1093_A1164_L0.5140.22
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244_N351_A0.5140.22
544_G1099_E0.5140.22
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542_A613_S0.5130.22
597_L737_A0.5130.22
225_L377_T0.5130.22
107_K110_K0.5130.22
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312_H335_F0.5120.22
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99_S150_V0.5120.22
654_I1480_S0.5120.22
285_I653_I0.5120.22
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289_D1007_I0.5120.22
658_G1092_M0.5120.22
487_K490_L0.5120.22
61_T201_L0.5120.22
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382_I705_K0.5120.22
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963_W1258_G0.5100.22
293_S736_E0.5100.22
1388_G1398_M0.5100.22
464_R621_K0.5100.22
50_D479_L0.5100.22
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1025_A1308_G0.5090.22
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527_A1258_G0.5090.22
485_E488_D0.5090.22
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462_L465_Q0.5090.22
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152_I1263_K0.5080.22
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575_I744_V0.5080.22
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174_Q1434_Q0.5060.21
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910_N1266_G0.5050.21
172_R301_E0.5050.21
643_I1063_A0.5050.21
1235_E1265_Y0.5050.21
792_W802_N0.5050.21
689_E826_K0.5050.21
115_L175_A0.5050.21
586_D655_V0.5050.21
74_A118_Q0.5050.21
431_T1445_A0.5050.21
535_S1150_M0.5050.21
380_D457_Q0.5050.21
534_T1079_E0.5050.21
201_L1258_G0.5050.21
830_E1300_D0.5050.21
82_N765_A0.5040.21
1025_A1063_A0.5040.21
26_L354_F0.5040.21
247_L286_L0.5040.21
842_F1173_I0.5040.21
402_N1285_Q0.5040.21
810_Q1116_M0.5040.21
557_I575_I0.5040.21
801_F1122_D0.5040.21
895_S1244_I0.5040.21
105_R150_V0.5040.21
630_P659_E0.5030.21
677_I1445_A0.5030.21
54_G652_S0.5030.21
266_R1107_P0.5030.21
595_R606_K0.5030.21
317_L1340_Y0.5030.21
672_Y745_I0.5030.21
1025_A1178_V0.5030.21
1107_P1146_I0.5020.21
1421_M1472_K0.5020.21
911_G1467_V0.5020.21
228_S1477_M0.5020.21
222_A921_I0.5020.21
938_E1033_V0.5020.21
880_E1103_F0.5020.21
162_L821_F0.5020.21
1358_A1386_V0.5010.21
752_T1075_R0.5010.21
285_I1007_I0.5010.21
939_L1001_A0.5010.21
33_K1204_E0.5010.21
813_C874_L0.5010.21
267_E1028_T0.5010.21
835_F1109_V0.5010.21
285_I608_I0.5010.21
1000_N1216_K0.5010.21
715_V1122_D0.5000.21
19_H195_T0.5000.21
58_D228_S0.5000.21
27_Y38_I0.5000.21
205_E209_A0.5000.21
104_E169_Y0.5000.21
338_Y1404_Y0.5000.21
70_Q223_F0.5000.21
589_F640_Q0.5000.21
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1ecfA 4 0.3125 100 0.961 Contact Map
1xffA 2 0.1513 100 0.961 Contact Map
3r2gA 3 0.1947 99.9 0.963 Contact Map
4amvA 2 0.377 99.9 0.964 Contact Map
1te5A 2 0.1461 99.9 0.965 Contact Map
1ao0A 3 0.2572 99.9 0.966 Contact Map
2qr6A 3 0.2171 99.9 0.967 Contact Map
3mdnA 4 0.1382 99.9 0.968 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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