XKDC - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

XKDC - Phage-like element PBSX protein XkdC

UniProt:	P39782	Sequences: MTKRTIEQILDELRRGRRPLLADKPAESDASRYDCLRCKDQGGYLVRQNGLEVWTMCSCMAERKVKRLLGASEITHAFRQLGFKEFRTEGKPQAIKDAFECTKEYVADYEQIKDCRKNSIALLGQPGSGKTHLLTAAANELMRTCYVPVIYFPFVEGFTDLKNDFALLEAKLNRMKQADVLFIDDLFKPVNGKPRATDWQLEQMYSVLNYRYLNHKPILLSSELTIEGLVRVDEALGTRIYEMCSDYLVIIKGAAYELNHRLEGVR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	266 (217)
Sequences:	2178 (1802)
Seq/√Len:	122.3

ECOLI - YDAV DNAC
BACSU - XKDC YQAM DNAI

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
238_T	255_A	5.499	1.00
138_A	182_F	4.080	1.00
138_A	149_V	3.966	1.00
102_T	137_A	3.279	1.00
134_L	221_S	3.264	1.00
83_F	136_A	3.014	1.00
140_E	143_R	2.905	1.00
132_H	136_A	2.794	1.00
188_K	235_A	2.744	1.00
154_F	183_I	2.740	1.00
147_V	179_D	2.615	1.00
121_A	222_S	2.571	1.00
99_F	103_K	2.527	1.00
254_A	259_N	2.478	1.00
225_T	228_G	2.418	1.00
35_C	38_C	2.327	1.00
211_R	218_I	2.310	1.00
134_L	219_L	2.288	1.00
101_C	245_S	2.264	1.00
37_R	58_S	2.249	1.00
62_E	66_K	2.198	1.00
179_D	216_K	2.183	1.00
151_Y	221_S	2.114	1.00
83_F	106_V	2.073	1.00
56_M	60_M	2.027	1.00
186_L	220_L	1.974	1.00
103_K	107_A	1.971	1.00
106_V	140_E	1.923	1.00
220_L	240_I	1.922	1.00
85_E	132_H	1.917	1.00
150_I	178_A	1.890	1.00
64_K	68_L	1.879	1.00
54_W	57_C	1.826	1.00
123_L	222_S	1.819	1.00
212_Y	242_E	1.798	1.00
173_N	177_Q	1.795	1.00
149_V	182_F	1.748	1.00
140_E	144_T	1.738	1.00
106_V	141_L	1.722	1.00
209_N	213_L	1.701	1.00
148_P	179_D	1.686	1.00
128_S	253_G	1.672	1.00
104_E	108_D	1.619	1.00
134_L	182_F	1.596	1.00
128_S	251_I	1.553	1.00
33_Y	40_D	1.552	1.00
122_L	251_I	1.548	1.00
62_E	65_V	1.512	1.00
137_A	219_L	1.497	1.00
158_F	200_Q	1.496	1.00
187_F	223_E	1.484	1.00
185_D	221_S	1.479	1.00
98_A	249_V	1.473	1.00
153_P	209_N	1.415	1.00
176_K	210_Y	1.385	1.00
105_Y	217_P	1.353	1.00
50_G	57_C	1.349	1.00
141_L	180_V	1.307	1.00
84_K	140_E	1.302	1.00
122_L	249_V	1.294	1.00
55_T	59_C	1.276	1.00
76_H	79_R	1.274	1.00
119_S	217_P	1.272	1.00
165_F	199_W	1.265	1.00
157_G	175_M	1.258	1.00
178_A	181_L	1.243	0.99
86_F	133_L	1.237	0.99
86_F	132_H	1.237	0.99
53_V	59_C	1.215	0.99
119_S	243_M	1.215	0.99
105_Y	109_Y	1.208	0.99
134_L	180_V	1.208	0.99
94_A	98_A	1.195	0.99
50_G	53_V	1.190	0.99
63_R	66_K	1.186	0.99
50_G	59_C	1.161	0.99
164_D	171_K	1.139	0.99
164_D	168_L	1.134	0.99
50_G	54_W	1.134	0.99
156_E	210_Y	1.112	0.99
96_K	100_E	1.105	0.99
153_P	205_Y	1.093	0.99
35_C	57_C	1.089	0.99
118_N	245_S	1.089	0.99
53_V	57_C	1.077	0.98
161_L	168_L	1.076	0.98
56_M	59_C	1.071	0.98
98_A	102_T	1.052	0.98
139_N	143_R	1.046	0.98
102_T	120_I	1.044	0.98
169_E	173_N	1.040	0.98
86_F	95_I	1.029	0.98
132_H	256_Y	1.028	0.98
205_Y	209_N	1.015	0.98
77_A	242_E	1.012	0.98
88_T	99_F	1.006	0.98
91_K	256_Y	1.000	0.98
108_D	111_Q	0.996	0.97
87_R	90_G	0.981	0.97
98_A	133_L	0.975	0.97
59_C	63_R	0.975	0.97
67_R	71_A	0.972	0.97
153_P	156_E	0.972	0.97
77_A	215_H	0.970	0.97
68_L	72_S	0.967	0.97
99_F	106_V	0.966	0.97
156_E	176_K	0.946	0.97
54_W	59_C	0.945	0.97
110_E	147_V	0.935	0.96
100_E	104_E	0.925	0.96
123_L	248_L	0.923	0.96
131_T	135_T	0.917	0.96
228_G	231_R	0.916	0.96
223_E	235_A	0.914	0.96
81_L	131_T	0.911	0.96
181_L	207_V	0.911	0.96
39_K	42_G	0.909	0.96
105_Y	110_E	0.905	0.96
160_D	171_K	0.897	0.95
155_V	176_K	0.895	0.95
42_G	59_C	0.894	0.95
154_F	158_F	0.893	0.95
154_F	204_M	0.889	0.95
135_T	151_Y	0.886	0.95
97_D	101_C	0.886	0.95
65_V	143_R	0.886	0.95
41_Q	44_Y	0.884	0.95
159_T	206_S	0.882	0.95
210_Y	214_N	0.881	0.95
152_F	157_G	0.872	0.95
37_R	44_Y	0.871	0.95
33_Y	39_K	0.867	0.94
163_N	169_E	0.864	0.94
196_A	200_Q	0.862	0.94
40_D	44_Y	0.861	0.94
256_Y	259_N	0.861	0.94
157_G	207_V	0.856	0.94
51_L	55_T	0.854	0.94
150_I	174_R	0.852	0.94
81_L	132_H	0.851	0.94
224_L	229_L	0.849	0.94
180_V	217_P	0.842	0.93
182_F	221_S	0.837	0.93
52_E	57_C	0.836	0.93
159_T	203_Q	0.836	0.93
208_L	218_I	0.834	0.93
81_L	135_T	0.831	0.93
162_K	197_T	0.823	0.93
57_C	60_M	0.805	0.92
175_M	178_A	0.799	0.92
187_F	194_P	0.795	0.91
162_K	165_F	0.793	0.91
154_F	161_L	0.792	0.91
175_M	181_L	0.790	0.91
194_P	232_V	0.790	0.91
251_I	254_A	0.788	0.91
218_I	244_C	0.786	0.91
82_G	143_R	0.784	0.91
101_C	249_V	0.783	0.91
158_F	165_F	0.780	0.91
78_F	81_L	0.779	0.91
61_A	64_K	0.775	0.90
141_L	147_V	0.772	0.90
172_L	207_V	0.772	0.90
107_A	140_E	0.771	0.90
80_Q	215_H	0.769	0.90
68_L	148_P	0.768	0.90
105_Y	120_I	0.765	0.90
58_S	62_E	0.763	0.90
68_L	71_A	0.760	0.89
87_R	256_Y	0.756	0.89
95_I	251_I	0.755	0.89
76_H	215_H	0.755	0.89
89_E	256_Y	0.755	0.89
106_V	137_A	0.754	0.89
194_P	202_E	0.753	0.89
185_D	194_P	0.751	0.89
44_Y	47_R	0.750	0.89
104_E	107_A	0.745	0.88
176_K	206_S	0.744	0.88
237_G	241_Y	0.740	0.88
61_A	65_V	0.736	0.88
162_K	166_A	0.731	0.88
154_F	200_Q	0.730	0.87
210_Y	216_K	0.729	0.87
181_L	211_R	0.728	0.87
81_L	85_E	0.727	0.87
131_T	151_Y	0.725	0.87
53_V	56_M	0.722	0.87
138_A	205_Y	0.721	0.87
135_T	139_N	0.716	0.86
151_Y	223_E	0.715	0.86
253_G	257_E	0.714	0.86
144_T	147_V	0.713	0.86
30_A	33_Y	0.708	0.86
35_C	59_C	0.702	0.85
187_F	224_L	0.696	0.85
185_D	188_K	0.695	0.85
74_I	135_T	0.692	0.85
253_G	256_Y	0.690	0.84
66_K	73_E	0.689	0.84
66_K	70_G	0.686	0.84
235_A	239_R	0.686	0.84
116_R	144_T	0.685	0.84
37_R	40_D	0.684	0.84
40_D	43_G	0.672	0.83
229_L	237_G	0.671	0.83
201_L	236_L	0.669	0.82
165_F	168_L	0.666	0.82
38_C	41_Q	0.666	0.82
123_L	225_T	0.664	0.82
123_L	250_I	0.662	0.82
188_K	223_E	0.661	0.82
78_F	135_T	0.660	0.82
51_L	59_C	0.659	0.82
88_T	96_K	0.657	0.81
161_L	207_V	0.657	0.81
36_L	42_G	0.655	0.81
194_P	200_Q	0.653	0.81
195_R	198_D	0.652	0.81
82_G	139_N	0.651	0.81
74_I	78_F	0.649	0.81
154_F	186_L	0.645	0.80
41_Q	47_R	0.645	0.80
51_L	54_W	0.640	0.80
162_K	199_W	0.637	0.79
109_Y	147_V	0.634	0.79
159_T	163_N	0.633	0.79
123_L	226_I	0.629	0.78
122_L	248_L	0.627	0.78
186_L	204_M	0.626	0.78
119_S	216_K	0.626	0.78
153_P	206_S	0.622	0.78
194_P	199_W	0.621	0.78
83_F	86_F	0.620	0.77
142_M	149_V	0.615	0.77
41_Q	46_V	0.614	0.77
68_L	146_Y	0.611	0.76
110_E	115_C	0.611	0.76
31_S	34_D	0.607	0.76
183_I	204_M	0.606	0.76
220_L	244_C	0.606	0.76
187_F	235_A	0.604	0.76
159_T	162_K	0.603	0.76
76_H	214_N	0.602	0.75
54_W	58_S	0.600	0.75
38_C	59_C	0.595	0.75
152_F	175_M	0.595	0.75
177_Q	214_N	0.595	0.75
77_A	81_L	0.595	0.75
149_V	179_D	0.594	0.74
83_F	102_T	0.594	0.74
119_S	187_F	0.593	0.74
80_Q	85_E	0.586	0.73
168_L	203_Q	0.585	0.73
188_K	194_P	0.584	0.73
127_G	257_E	0.581	0.73
95_I	98_A	0.581	0.73
153_P	213_L	0.579	0.73
42_G	46_V	0.576	0.72
55_T	58_S	0.575	0.72
69_L	74_I	0.569	0.71
135_T	138_A	0.568	0.71
100_E	103_K	0.566	0.71
72_S	185_D	0.564	0.71
32_R	43_G	0.563	0.70
33_Y	36_L	0.563	0.70
235_A	240_I	0.563	0.70
83_F	137_A	0.562	0.70
86_F	99_F	0.562	0.70
163_N	207_V	0.561	0.70
254_A	258_L	0.561	0.70
212_Y	243_M	0.561	0.70
124_G	204_M	0.560	0.70
230_V	237_G	0.557	0.70
211_R	217_P	0.556	0.70
65_V	68_L	0.554	0.69
207_V	211_R	0.554	0.69
209_N	239_R	0.553	0.69
161_L	172_L	0.553	0.69
132_H	135_T	0.552	0.69
91_K	95_I	0.548	0.68
82_G	136_A	0.546	0.68
28_S	32_R	0.545	0.68
125_Q	252_K	0.544	0.68
109_Y	180_V	0.543	0.68
105_Y	180_V	0.542	0.68
160_D	174_R	0.542	0.68
30_A	47_R	0.540	0.67
203_Q	206_S	0.539	0.67
224_L	235_A	0.538	0.67
104_E	231_R	0.535	0.67
74_I	151_Y	0.534	0.66
163_N	167_L	0.533	0.66
102_T	106_V	0.529	0.66
201_L	233_D	0.529	0.66
153_P	235_A	0.528	0.66
172_L	176_K	0.528	0.66
197_T	200_Q	0.527	0.65
119_S	199_W	0.527	0.65
60_M	67_R	0.526	0.65
115_C	215_H	0.525	0.65
182_F	219_L	0.524	0.65
83_F	99_F	0.521	0.65
241_Y	258_L	0.521	0.65
185_D	239_R	0.520	0.64
30_A	34_D	0.519	0.64
40_D	59_C	0.519	0.64
178_A	207_V	0.518	0.64
148_P	178_A	0.518	0.64
101_C	108_D	0.517	0.64
223_E	257_E	0.516	0.64
98_A	251_I	0.514	0.64
39_K	44_Y	0.514	0.64
121_A	240_I	0.511	0.63
36_L	131_T	0.508	0.63
67_R	80_Q	0.506	0.62
155_V	203_Q	0.503	0.62
90_G	95_I	0.502	0.62
38_C	42_G	0.502	0.62
160_D	164_D	0.502	0.62
164_D	167_L	0.502	0.62
125_Q	128_S	0.502	0.62
78_F	131_T	0.501	0.62
59_C	62_E	0.500	0.61
158_F	199_W	0.500	0.61

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4m4wJ	3	0.8571	100	0.443	Contact Map
2qgzA	1	0.6541	100	0.47	Contact Map
2w58A	2	0.6842	100	0.534	Contact Map
3ec2A	1	0.6128	100	0.555	Contact Map
1l8qA	1	0.6579	99.9	0.644	Contact Map
2vhjA	3	0.8383	99.9	0.657	Contact Map
3bosA	2	0.6504	99.8	0.663	Contact Map
2z4sA	1	0.6617	99.8	0.67	Contact Map
1tueA	1	0.6692	99.7	0.723	Contact Map
1g5tA	2	0.4624	99.6	0.728	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0083 seconds.