PYRP - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

PYRP - Uracil permease

UniProt:	P39766	Sequences: MSKKKVNLGVRDVPTPFSWVSFSLQHLFAMFGSTILVPKLVGMSPAVALVTSGIGTLAYLLITKGQIPAYLGSSFAFISPIILVKATGGPGAAMVGAFLAGLVYGLIALLIRQLGTGWLMKILPPVVVGPVIIVIGLGLASTAVNMAMYADPNASELVYSLKHFSVAGVTLAITIICAIFLRGFLSLIPVLIGIIGGYLFALTQGIVNFQPVLDAKWFAVPEFIIPFKDYSPSVTLGIAAAMVPVAFVTMSEHIGHQMVLSKVVGQDFIKKPGLHRSIMGDSVATILASLIGGPPTTTYGENIGVLAITRVFSVFVIGGAAVIALCFGFIGKISALISSVPSAVMGGVSFLLFGIIASSGLRMLIDNKIDYENNRNLIITSVILVIGVGGAFIQVSQGGFQVSGMALAAIVGVILNLILPQAKEEQADTSEQHHI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	435 (396)
Sequences:	4316 (2264)
Seq/√Len:	113.8

ECOLI - UACT XANQ RUTG URAA XANP YBBY
BACSU - PYRP PBUX PUCK PUCJ YWDJ

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
169_V	200_F	5.559	1.00
173_I	196_G	5.523	1.00
147_A	167_A	4.730	1.00
134_V	408_A	4.252	1.00
174_T	193_G	4.034	1.00
50_V	328_G	3.839	1.00
199_L	203_T	3.755	1.00
217_W	332_K	3.605	1.00
210_Q	214_D	3.426	1.00
386_I	411_V	3.243	1.00
177_C	192_I	3.239	1.00
209_F	212_V	3.114	1.00
166_V	201_A	3.069	1.00
107_I	243_V	3.050	1.00
53_G	325_L	2.898	1.00
383_I	412_G	2.879	1.00
166_V	206_I	2.833	1.00
169_V	196_G	2.726	1.00
215_A	332_K	2.539	1.00
171_L	351_L	2.529	1.00
23_S	319_G	2.523	1.00
27_L	323_I	2.505	1.00
257_Q	277_S	2.487	1.00
55_G	284_A	2.480	1.00
375_R	420_P	2.402	1.00
166_V	204_Q	2.387	1.00
198_Y	207_V	2.384	1.00
102_L	289_S	2.371	1.00
227_F	290_L	2.371	1.00
98_F	289_S	2.340	1.00
169_V	173_I	2.313	1.00
66_Q	271_K	2.291	1.00
195_I	199_L	2.287	1.00
102_L	286_I	2.241	1.00
20_V	323_I	2.225	1.00
165_S	169_V	2.219	1.00
213_L	216_K	2.205	1.00
19_W	319_G	2.201	1.00
57_L	321_A	2.186	1.00
51_T	291_I	2.185	1.00
96_G	233_S	2.154	1.00
173_I	200_F	2.137	1.00
57_L	318_G	2.108	1.00
162_K	206_I	2.083	1.00
199_L	202_L	2.074	1.00
212_V	336_L	2.073	1.00
173_I	177_C	2.062	1.00
122_I	417_L	2.047	1.00
311_V	316_V	2.025	1.00
60_L	318_G	1.982	1.00
414_I	418_I	1.968	1.00
174_T	348_V	1.966	1.00
41_V	81_I	1.948	1.00
211_P	339_S	1.927	1.00
176_I	180_F	1.904	1.00
50_V	325_L	1.902	1.00
198_Y	339_S	1.897	1.00
11_R	266_Q	1.852	1.00
102_L	106_L	1.824	1.00
161_L	165_S	1.799	1.00
137_L	357_A	1.788	1.00
200_F	204_Q	1.766	1.00
91_G	233_S	1.764	1.00
124_P	416_N	1.749	1.00
177_C	181_L	1.738	1.00
215_A	335_A	1.736	1.00
210_Q	213_L	1.735	1.00
322_V	326_C	1.734	1.00
95_V	234_V	1.722	1.00
146_M	342_S	1.717	1.00
27_L	320_A	1.712	1.00
171_L	382_V	1.671	1.00
165_S	168_G	1.668	1.00
184_F	188_I	1.655	1.00
235_T	238_I	1.638	1.00
106_L	110_L	1.636	1.00
273_G	276_R	1.599	1.00
212_V	215_A	1.574	1.00
383_I	411_V	1.561	1.00
52_S	70_Y	1.558	1.00
181_L	185_L	1.548	1.00
126_V	380_T	1.546	1.00
168_G	172_A	1.530	1.00
379_I	415_L	1.525	1.00
13_V	315_F	1.525	1.00
105_G	279_M	1.521	1.00
197_G	344_V	1.508	1.00
109_L	286_I	1.486	1.00
162_K	204_Q	1.457	1.00
386_I	407_L	1.446	1.00
185_L	192_I	1.444	1.00
157_L	160_S	1.441	1.00
181_L	186_S	1.432	1.00
266_Q	273_G	1.417	1.00
410_I	414_I	1.406	1.00
203_T	206_I	1.404	1.00
172_A	176_I	1.395	1.00
82_I	85_K	1.387	1.00
202_L	209_F	1.385	1.00
395_V	398_G	1.385	1.00
394_Q	401_Q	1.384	1.00
200_F	203_T	1.380	1.00
196_G	200_F	1.378	1.00
78_I	82_I	1.372	1.00
56_T	70_Y	1.370	1.00
57_L	60_L	1.363	1.00
211_P	214_D	1.359	1.00
26_H	302_N	1.341	1.00
57_L	325_L	1.341	1.00
148_M	158_V	1.334	1.00
60_L	317_I	1.323	1.00
61_L	318_G	1.323	1.00
84_V	238_I	1.320	1.00
88_G	235_T	1.316	1.00
85_K	97_A	1.313	1.00
382_V	411_V	1.298	0.99
99_L	239_A	1.292	0.99
306_L	312_F	1.291	0.99
105_G	286_I	1.285	0.99
30_M	34_T	1.282	0.99
17_F	21_S	1.278	0.99
260_L	306_L	1.276	0.99
256_H	300_G	1.274	0.99
332_K	335_A	1.271	0.99
262_K	368_K	1.264	0.99
54_I	325_L	1.251	0.99
228_K	292_G	1.251	0.99
188_I	192_I	1.245	0.99
112_R	275_H	1.232	0.99
371_Y	380_T	1.229	0.99
81_I	97_A	1.227	0.99
219_A	331_G	1.223	0.99
109_L	282_S	1.207	0.99
234_V	239_A	1.197	0.99
134_V	387_G	1.197	0.99
69_A	260_L	1.195	0.99
192_I	196_G	1.171	0.99
50_V	291_I	1.166	0.99
126_V	130_P	1.163	0.99
330_I	334_S	1.158	0.99
369_I	376_N	1.154	0.99
398_G	402_V	1.153	0.99
74_S	249_T	1.149	0.99
227_F	232_P	1.143	0.99
236_L	239_A	1.142	0.99
109_L	283_V	1.139	0.99
397_Q	401_Q	1.133	0.99
326_C	330_I	1.132	0.99
64_K	276_R	1.118	0.98
89_G	96_G	1.109	0.98
144_V	389_G	1.109	0.98
76_A	249_T	1.106	0.98
88_G	91_G	1.105	0.98
71_L	298_T	1.105	0.98
102_L	105_G	1.100	0.98
72_G	299_Y	1.096	0.98
261_S	268_F	1.092	0.98
253_H	257_Q	1.086	0.98
257_Q	281_D	1.081	0.98
169_V	204_Q	1.080	0.98
370_D	373_N	1.072	0.98
109_L	113_Q	1.067	0.98
104_Y	246_A	1.065	0.98
103_V	239_A	1.062	0.98
70_Y	320_A	1.062	0.98
108_A	279_M	1.059	0.98
16_P	20_V	1.055	0.98
256_H	303_I	1.054	0.98
54_I	287_L	1.051	0.98
80_P	245_V	1.051	0.98
202_L	207_V	1.050	0.98
378_I	382_V	1.047	0.98
39_K	45_P	1.033	0.97
384_L	388_V	1.028	0.97
288_A	296_T	1.026	0.97
84_V	242_M	1.025	0.97
102_L	232_P	1.023	0.97
107_I	250_M	1.021	0.97
14_P	19_W	1.021	0.97
14_P	313_S	1.018	0.97
145_N	158_V	1.017	0.97
201_A	205_G	1.014	0.97
182_R	186_S	1.011	0.97
166_V	200_F	1.005	0.97
269_I	273_G	1.002	0.97
133_I	384_L	1.002	0.97
171_L	175_I	1.001	0.97
87_T	90_P	0.999	0.97
173_I	193_G	0.992	0.97
163_H	343_A	0.985	0.97
252_E	297_T	0.985	0.97
29_A	305_V	0.984	0.97
101_G	289_S	0.984	0.97
165_S	204_Q	0.981	0.97
162_K	166_V	0.981	0.97
160_S	163_H	0.978	0.96
140_A	385_V	0.975	0.96
287_L	291_I	0.975	0.96
69_A	298_T	0.969	0.96
162_K	165_S	0.968	0.96
315_F	318_G	0.956	0.96
198_Y	209_F	0.954	0.96
10_V	13_V	0.946	0.96
253_H	277_S	0.944	0.96
14_P	316_V	0.938	0.96
24_L	323_I	0.934	0.95
83_L	86_A	0.933	0.95
143_A	167_A	0.920	0.95
83_L	87_T	0.918	0.95
26_H	30_M	0.916	0.95
163_H	206_I	0.914	0.95
57_L	322_V	0.912	0.95
138_G	405_M	0.912	0.95
20_V	319_G	0.910	0.95
264_V	312_F	0.907	0.95
217_W	330_I	0.905	0.95
201_A	206_I	0.900	0.94
237_G	241_A	0.900	0.94
26_H	29_A	0.894	0.94
220_V	329_F	0.892	0.94
94_M	98_F	0.891	0.94
54_I	58_A	0.883	0.94
178_A	378_I	0.878	0.94
97_A	100_A	0.876	0.94
58_A	62_I	0.875	0.93
264_V	267_D	0.873	0.93
103_V	107_I	0.870	0.93
110_L	114_L	0.868	0.93
53_G	321_A	0.861	0.93
15_T	18_S	0.858	0.93
51_T	288_A	0.853	0.93
143_A	170_T	0.852	0.93
59_Y	67_I	0.851	0.93
117_G	275_H	0.850	0.92
133_I	361_L	0.848	0.92
13_V	19_W	0.845	0.92
99_L	234_V	0.842	0.92
74_S	297_T	0.840	0.92
358_S	377_L	0.839	0.92
20_V	24_L	0.837	0.92
390_G	394_Q	0.837	0.92
318_G	321_A	0.835	0.92
70_Y	317_I	0.834	0.92
261_S	269_I	0.828	0.91
217_W	221_P	0.828	0.91
27_L	327_F	0.825	0.91
62_I	283_V	0.822	0.91
177_C	196_G	0.818	0.91
69_A	257_Q	0.816	0.91
198_Y	340_V	0.815	0.91
253_H	281_D	0.814	0.91
33_S	353_F	0.811	0.91
78_I	247_F	0.809	0.91
109_L	279_M	0.809	0.91
37_V	75_F	0.807	0.90
132_I	256_H	0.807	0.90
158_V	161_L	0.807	0.90
20_V	213_L	0.805	0.90
216_K	219_A	0.805	0.90
373_N	376_N	0.794	0.90
105_G	112_R	0.792	0.90
177_C	193_G	0.791	0.90
146_M	353_F	0.786	0.89
375_R	379_I	0.786	0.89
60_L	314_V	0.780	0.89
33_S	301_E	0.779	0.89
397_Q	400_F	0.777	0.89
351_L	378_I	0.777	0.89
193_G	196_G	0.774	0.89
212_V	339_S	0.774	0.89
327_F	333_I	0.773	0.88
247_F	251_S	0.772	0.88
249_T	297_T	0.769	0.88
393_I	397_Q	0.768	0.88
168_G	204_Q	0.763	0.88
176_I	418_I	0.761	0.88
191_L	195_I	0.760	0.88
387_G	408_A	0.758	0.87
50_V	329_F	0.758	0.87
130_P	383_I	0.757	0.87
145_N	148_M	0.757	0.87
96_G	235_T	0.757	0.87
73_S	77_F	0.757	0.87
36_L	146_M	0.756	0.87
178_A	308_I	0.756	0.87
209_F	339_S	0.755	0.87
123_L	409_A	0.753	0.87
95_V	233_S	0.752	0.87
32_G	38_P	0.752	0.87
165_S	200_F	0.751	0.87
76_A	352_L	0.750	0.87
318_G	322_V	0.750	0.87
48_A	294_P	0.749	0.87
103_V	234_V	0.748	0.87
22_F	26_H	0.748	0.87
95_V	99_L	0.748	0.87
382_V	415_L	0.747	0.87
30_M	70_Y	0.747	0.87
79_S	82_I	0.746	0.87
267_D	272_P	0.744	0.86
333_I	336_L	0.744	0.86
99_L	103_V	0.743	0.86
176_I	181_L	0.743	0.86
207_V	339_S	0.742	0.86
247_F	259_V	0.742	0.86
254_I	274_L	0.740	0.86
229_D	232_P	0.740	0.86
323_I	327_F	0.739	0.86
390_G	393_I	0.739	0.86
379_I	383_I	0.739	0.86
357_A	384_L	0.736	0.86
68_P	317_I	0.736	0.86
34_T	52_S	0.733	0.86
283_V	287_L	0.733	0.86
212_V	332_K	0.732	0.86
74_S	77_F	0.731	0.86
373_N	422_A	0.730	0.85
105_G	282_S	0.728	0.85
69_A	305_V	0.728	0.85
381_S	385_V	0.727	0.85
37_V	73_S	0.726	0.85
199_L	326_C	0.725	0.85
23_S	320_A	0.725	0.85
30_M	302_N	0.725	0.85
358_S	380_T	0.724	0.85
208_N	211_P	0.724	0.85
303_I	306_L	0.724	0.85
10_V	14_P	0.724	0.85
253_H	297_T	0.723	0.85
146_M	345_M	0.719	0.85
39_K	345_M	0.717	0.84
286_I	290_L	0.717	0.84
133_I	364_L	0.717	0.84
51_T	287_L	0.717	0.84
272_P	276_R	0.712	0.84
177_C	185_L	0.712	0.84
285_T	296_T	0.710	0.84
122_I	413_V	0.710	0.84
148_M	159_Y	0.709	0.84
236_L	240_A	0.708	0.84
47_V	50_V	0.702	0.83
335_A	338_S	0.702	0.83
148_M	164_F	0.701	0.83
394_Q	399_G	0.699	0.83
159_Y	163_H	0.696	0.83
354_G	358_S	0.691	0.82
106_L	109_L	0.688	0.82
371_Y	377_L	0.688	0.82
46_A	334_S	0.686	0.82
264_V	268_F	0.685	0.82
48_A	52_S	0.684	0.82
220_V	328_G	0.683	0.81
132_I	135_I	0.683	0.81
201_A	204_Q	0.682	0.81
88_G	238_I	0.680	0.81
71_L	253_H	0.679	0.81
187_L	420_P	0.679	0.81
16_P	323_I	0.678	0.81
265_G	312_F	0.677	0.81
117_G	121_K	0.676	0.81
108_A	249_T	0.673	0.80
243_V	246_A	0.673	0.80
181_L	184_F	0.673	0.80
51_T	293_G	0.672	0.80
195_I	336_L	0.672	0.80
82_I	86_A	0.671	0.80
190_V	305_V	0.671	0.80
147_A	350_F	0.669	0.80
118_W	122_I	0.666	0.80
47_V	51_T	0.666	0.80
335_A	339_S	0.665	0.80
260_L	298_T	0.663	0.79
177_C	189_P	0.662	0.79
309_T	323_I	0.659	0.79
96_G	100_A	0.658	0.79
164_F	168_G	0.658	0.79
34_T	37_V	0.654	0.79
34_T	48_A	0.652	0.78
62_I	280_G	0.651	0.78
48_A	73_S	0.651	0.78
179_I	358_S	0.649	0.78
194_I	251_S	0.648	0.78
212_V	335_A	0.645	0.78
108_A	250_M	0.644	0.77
138_G	403_S	0.643	0.77
79_S	83_L	0.641	0.77
371_Y	376_N	0.641	0.77
26_H	305_V	0.640	0.77
140_A	388_V	0.640	0.77
252_E	281_D	0.639	0.77
85_K	93_A	0.639	0.77
396_S	399_G	0.639	0.77
241_A	400_F	0.638	0.77
113_Q	279_M	0.638	0.77
41_V	194_I	0.637	0.77
260_L	303_I	0.633	0.76
283_V	286_I	0.631	0.76
58_A	280_G	0.631	0.76
194_I	348_V	0.629	0.76
232_P	289_S	0.628	0.76
124_P	129_G	0.628	0.76
179_I	356_I	0.627	0.76
30_M	362_R	0.626	0.75
36_L	39_K	0.624	0.75
185_L	189_P	0.624	0.75
174_T	177_C	0.624	0.75
192_I	195_I	0.623	0.75
65_G	273_G	0.621	0.75
125_P	377_L	0.621	0.75
126_V	376_N	0.620	0.75
300_G	359_S	0.620	0.75
68_P	264_V	0.619	0.75
174_T	351_L	0.618	0.75
76_A	135_I	0.617	0.74
22_F	300_G	0.615	0.74
204_Q	333_I	0.615	0.74
307_A	362_R	0.614	0.74
386_I	391_A	0.614	0.74
160_S	165_S	0.613	0.74
55_G	280_G	0.613	0.74
11_R	393_I	0.613	0.74
301_E	353_F	0.612	0.74
146_M	349_S	0.612	0.74
394_Q	398_G	0.611	0.74
90_P	93_A	0.611	0.74
131_V	171_L	0.611	0.74
172_A	175_I	0.611	0.74
166_V	194_I	0.609	0.73
13_V	16_P	0.609	0.73
142_T	146_M	0.608	0.73
51_T	284_A	0.608	0.73
166_V	343_A	0.607	0.73
54_I	291_I	0.607	0.73
170_T	197_G	0.606	0.73
368_K	372_E	0.606	0.73
249_T	252_E	0.603	0.73
263_V	307_A	0.603	0.73
140_A	381_S	0.601	0.73
277_S	281_D	0.599	0.72
67_I	277_S	0.598	0.72
128_V	331_G	0.597	0.72
52_S	69_A	0.596	0.72
40_L	82_I	0.595	0.72
129_G	360_G	0.594	0.72
12_D	313_S	0.593	0.72
391_A	397_Q	0.593	0.72
196_G	199_L	0.591	0.71
124_P	304_G	0.591	0.71
354_G	377_L	0.591	0.71
202_L	205_G	0.591	0.71
10_V	313_S	0.590	0.71
246_A	285_T	0.589	0.71
43_M	294_P	0.589	0.71
413_V	417_L	0.587	0.71
123_L	183_G	0.587	0.71
176_I	414_I	0.586	0.71
242_M	343_A	0.584	0.70
53_G	57_L	0.583	0.70
380_T	384_L	0.582	0.70
215_A	331_G	0.582	0.70
326_C	400_F	0.582	0.70
364_L	369_I	0.580	0.70
379_I	420_P	0.579	0.70
81_I	85_K	0.579	0.70
81_I	242_M	0.578	0.70
32_G	301_E	0.577	0.69
227_F	230_Y	0.577	0.69
71_L	285_T	0.575	0.69
28_F	379_I	0.574	0.69
199_L	213_L	0.574	0.69
56_T	297_T	0.574	0.69
283_V	318_G	0.573	0.69
404_G	408_A	0.573	0.69
382_V	388_V	0.573	0.69
256_H	359_S	0.573	0.69
249_T	257_Q	0.571	0.69
197_G	205_G	0.570	0.69
108_A	246_A	0.570	0.69
16_P	19_W	0.570	0.69
261_S	265_G	0.570	0.69
59_Y	314_V	0.569	0.68
254_I	258_M	0.568	0.68
35_I	45_P	0.567	0.68
23_S	132_I	0.567	0.68
281_D	381_S	0.567	0.68
205_G	344_V	0.567	0.68
311_V	345_M	0.566	0.68
173_I	192_I	0.566	0.68
202_L	418_I	0.564	0.68
126_V	379_I	0.563	0.68
194_I	345_M	0.559	0.67
390_G	397_Q	0.559	0.67
64_K	105_G	0.559	0.67
300_G	406_A	0.558	0.67
98_F	104_Y	0.558	0.67
14_P	315_F	0.557	0.67
394_Q	397_Q	0.557	0.67
118_W	123_L	0.557	0.67
95_V	239_A	0.555	0.67
183_G	186_S	0.554	0.66
73_S	297_T	0.554	0.66
80_P	404_G	0.554	0.66
255_G	387_G	0.553	0.66
159_Y	388_V	0.552	0.66
385_V	388_V	0.552	0.66
328_G	334_S	0.552	0.66
268_F	273_G	0.551	0.66
110_L	216_K	0.551	0.66
135_I	299_Y	0.550	0.66
85_K	90_P	0.549	0.66
161_L	397_Q	0.548	0.66
37_V	96_G	0.548	0.66
345_M	348_V	0.547	0.65
133_I	174_T	0.546	0.65
111_I	278_I	0.546	0.65
102_L	235_T	0.545	0.65
45_P	338_S	0.545	0.65
50_V	229_D	0.544	0.65
256_H	298_T	0.544	0.65
259_V	359_S	0.544	0.65
56_T	321_A	0.544	0.65
20_V	326_C	0.542	0.65
285_T	288_A	0.542	0.65
387_G	404_G	0.541	0.65
253_H	298_T	0.541	0.65
140_A	350_F	0.539	0.64
60_L	321_A	0.538	0.64
281_D	297_T	0.537	0.64
14_P	23_S	0.536	0.64
269_I	272_P	0.536	0.64
76_A	297_T	0.536	0.64
375_R	421_Q	0.534	0.64
71_L	257_Q	0.534	0.64
34_T	324_A	0.534	0.64
130_P	412_G	0.533	0.63
357_A	361_L	0.532	0.63
106_L	218_F	0.532	0.63
57_L	61_L	0.532	0.63
176_I	237_G	0.532	0.63
105_G	109_L	0.529	0.63
358_S	381_S	0.528	0.63
47_V	292_G	0.528	0.63
37_V	48_A	0.527	0.63
198_Y	202_L	0.526	0.62
358_S	361_L	0.526	0.62
302_N	305_V	0.525	0.62
392_F	396_S	0.524	0.62
103_V	340_V	0.522	0.62
362_R	368_K	0.521	0.62
98_F	286_I	0.520	0.62
108_A	112_R	0.520	0.62
80_P	83_L	0.519	0.61
121_K	417_L	0.519	0.61
314_V	318_G	0.518	0.61
37_V	129_G	0.518	0.61
258_M	310_R	0.518	0.61
76_A	245_V	0.517	0.61
84_V	93_A	0.517	0.61
136_G	143_A	0.516	0.61
249_T	256_H	0.516	0.61
180_F	418_I	0.516	0.61
220_V	247_F	0.515	0.61
116_T	254_I	0.515	0.61
196_G	203_T	0.515	0.61
77_F	285_T	0.515	0.61
235_T	242_M	0.515	0.61
400_F	410_I	0.513	0.60
138_G	404_G	0.513	0.60
48_A	295_P	0.512	0.60
24_L	148_M	0.512	0.60
183_G	193_G	0.512	0.60
11_R	193_G	0.512	0.60
73_S	256_H	0.511	0.60
36_L	40_L	0.511	0.60
334_S	339_S	0.510	0.60
300_G	303_I	0.509	0.60
50_V	402_V	0.508	0.60
286_I	289_S	0.508	0.60
182_R	322_V	0.508	0.60
85_K	88_G	0.507	0.60
163_H	167_A	0.506	0.59
14_P	420_P	0.505	0.59
96_G	101_G	0.505	0.59
19_W	315_F	0.505	0.59
106_L	199_L	0.505	0.59
186_S	371_Y	0.504	0.59
88_G	96_G	0.503	0.59
419_L	422_A	0.502	0.59
195_I	418_I	0.501	0.59
256_H	281_D	0.501	0.59
10_V	67_I	0.501	0.59
47_V	98_F	0.501	0.59
10_V	38_P	0.500	0.59
103_V	243_V	0.500	0.59

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3qe7A	2	0.9264	100	0.37	Contact Map
2jlnA	1	0.8736	81.7	0.959	Contact Map
3o7qA	1	0.4322	52.2	0.967	Contact Map
2gfpA	2	0.4161	46.5	0.968	Contact Map
4wgvA	2	0.7655	35.3	0.97	Contact Map
1pw4A	1	0.4575	33.4	0.97	Contact Map
4pypA	1	0.4276	22.9	0.973	Contact Map
4ltoA	3	0.2138	22.2	0.973	Contact Map
2nwlA	3	0.3862	19.1	0.974	Contact Map
3mktA	1	0.9563	18.4	0.974	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0119 seconds.